Rmu_sc0036091.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036091.1
OG0009028
Physical Location & Seq
Forward (+)
1 .. 2974
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036091.1_g000001.1.cds

Sequence Viewer

Length: 660 bp
gtaatgtctggatcagatcctatgactgtccgagcaaaactaaggaccgcacttccacgtgcccctgagaagcaactttatgatgttgctattcttcatacatcatttgcaaggcttttgggcgagccgaaggcatcatccatggtcctctctagtacttcggatcaaatccacttctttcatgagcttgttgatcgtataaacaaagaacttcaaggatttgaggcagtggttaccgagctctggtatgtggaggaattcgacgttttggcccttgcgttgaatgggagaatgaaggtgcgcaagttccaacttggcggtcggagggcgagtcgggctcgatggattgagggatcggttcgttgggttgatgagaggaaacggtgtggaggcggtgggttgggagcagcaacgcgattccgggttggtggttctgtttcgttggttggtgatgggttgaaggattttcgatctgacttctggccatacgggtttgggattgtgatggggtgtaggatccatacgggttcgatctggtttcgctggtggtccgtcaacggcagggtggtgatggtggtgagggtcttgcggcgacaaattgaggaccttttatatgtgcctcaattgttcctacgacaaattgcatcatctatgttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.86

Weight (kDa)

10.25

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AccII CGCG 1 cut(s) 415
AciI CCGC 4 cut(s) 48, 318, 393, 589
AclWI GGATC 6 cut(s) 11, 19, 171, 361, 511, 524
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 215, 283, 460
AluBI AGCT 2 cut(s) 187, 241
AluI AGCT 2 cut(s) 187, 241
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 6 cut(s) 11, 19, 171, 361, 511, 524
AoxI GGCC 2 cut(s) 270, 482
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 5 cut(s) 45, 145, 271, 549, 604
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 461, 580, 589
AvaII GGWCC 4 cut(s) 45, 145, 549, 604
BaeGI GKGCMC 1 cut(s) 64
BalI TGGCCA 1 cut(s) 484
BamHI GGATCC 1 cut(s) 516
BanII GRGCYC 2 cut(s) 243, 340
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 419
BccI CCATC 4 cut(s) 336, 446, 499, 565
BceAI ACGGC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 422
BfaI CTAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 408, 590
BlsI GCNGC 2 cut(s) 409, 591
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 4 cut(s) 45, 145, 549, 604
BmgT120I GGNCC 5 cut(s) 45, 145, 271, 549, 604
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 143, 653
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpuMI CCSGG 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 272, 484
BsiEI CGRYCG 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 243
BsnI GGCC 2 cut(s) 272, 484
Bsp1286I GDGCHC 3 cut(s) 64, 243, 340
Bsp143I GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 4 cut(s) 48, 318, 393, 589
BspANI GGCC 2 cut(s) 272, 484
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 518
BspPI GGATC 6 cut(s) 11, 19, 171, 361, 511, 524
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 28, 384
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 41, 66
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 8 cut(s) 14, 19, 166, 196, 356, 473, 519, 534
BstMBI GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 16, 516
BstYI RGATCY 2 cut(s) 16, 516
BsuRI GGCC 2 cut(s) 272, 484
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 5 cut(s) 45, 145, 271, 549, 604
Csp6I GTAC 1 cut(s) 156
CviAII CATG 2 cut(s) 142, 182
CviJI RGCY 7 cut(s) 115, 127, 187, 241, 272, 338, 484
CviKI_1 RGCY 7 cut(s) 115, 127, 187, 241, 272, 338, 484
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 41, 66
DpnI GATC 8 cut(s) 13, 18, 165, 195, 355, 472, 518, 533
DpnII GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
EaeI YGGCCR 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 243, 340
Eco47I GGWCC 4 cut(s) 45, 145, 549, 604
Eco53kI GAGCTC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 604
EcoO65I GGTNACC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 243, 340
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 145, 185
FatI CATG 2 cut(s) 141, 181
Fnu4HI GCNGC 2 cut(s) 408, 590
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 2 cut(s) 243, 340
Fsp4HI GCNGC 2 cut(s) 408, 590
FspBI CTAG 1 cut(s) 153
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 1 cut(s) 302
GluI GCNGC 2 cut(s) 408, 590
HaeIII GGCC 2 cut(s) 272, 484
HapII CCGG 1 cut(s) 421
HhaI GCGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 145, 185
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 2 cut(s) 331, 417
HpaII CCGG 1 cut(s) 421
HphI GGTGA 3 cut(s) 461, 580, 589
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 5 cut(s) 16, 32, 163, 324, 475
Hpy188III TCNNGA 2 cut(s) 9, 182
Hpy8I GTNNAC 1 cut(s) 556
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 124, 289, 454
HpyCH4III ACNGT 2 cut(s) 28, 384
HpyCH4IV ACGT 2 cut(s) 58, 264
HpyCH4V TGCA 2 cut(s) 110, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 41, 66
HpySE526I ACGT 2 cut(s) 58, 264
Hsp92II CATG 2 cut(s) 145, 185
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 7 cut(s) 78, 229, 434, 466, 520, 529, 547
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 2 cut(s) 143, 653
MaeI CTAG 1 cut(s) 153
MaeII ACGT 2 cut(s) 58, 264
MaeIII GTNAC 1 cut(s) 232
MalI GATC 8 cut(s) 13, 18, 165, 195, 355, 472, 518, 533
MboI GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
MboII GAAGA 1 cut(s) 86
MfeI CAATTG 1 cut(s) 623
MflI RGATCY 2 cut(s) 16, 516
MhlI GDGCHC 3 cut(s) 64, 243, 340
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 4 cut(s) 257, 597, 623, 639
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 2 cut(s) 302, 334
Mox20I TGGCCA 1 cut(s) 484
MscI TGGCCA 1 cut(s) 484
Msp20I TGGCCA 1 cut(s) 484
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 623
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 141
NdeII GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
NlaIII CATG 2 cut(s) 145, 185
NlaIV GGNNCC 1 cut(s) 518
NsbI TGCGCA 1 cut(s) 302
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 1 cut(s) 417
PkrI GCNGC 2 cut(s) 409, 591
PleI GAGTC 1 cut(s) 339
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 339
Ppu21I YACGTR 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 604
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 604
PspCI CACGTG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 5 cut(s) 45, 145, 271, 549, 604
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 2 cut(s) 16, 516
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 2 cut(s) 408, 590
Sau3AI GATC 8 cut(s) 11, 16, 163, 193, 353, 470, 516, 531
Sau96I GGNCC 5 cut(s) 45, 145, 271, 549, 604
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 3 cut(s) 64, 243, 340
SetI ASST 6 cut(s) 61, 189, 243, 267, 300, 609
SfaNI GCATC 2 cut(s) 143, 653
SinI GGWCC 4 cut(s) 45, 145, 549, 604
Sse9I AATT 4 cut(s) 257, 597, 623, 639
SsiI CCGC 4 cut(s) 48, 318, 393, 589
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 28, 384
TaiI ACGT 2 cut(s) 61, 267
TaqI TCGA 4 cut(s) 261, 340, 469, 530
TasI AATT 4 cut(s) 257, 597, 623, 639
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 1 cut(s) 417
TscAI CASTG 1 cut(s) 234
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 86, 170, 308
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 4 cut(s) 45, 145, 549, 604
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.