Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Reverse (-)

15666077 .. 15669152

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G190900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATCGCTCCAAAACCGTAGCTTTCCTCTGGCTCTTCTCTGCCTTACTCTTCTACTCTCTCTTCCAAATGGCGCTCCGGATCTCTGATTCTTCACACAATTACACACCCGCTTCTGATTCAATGGTTTCCAATAAGGAGCGGAGGTCCGCCTTGTACGATCGGATGGCTAGGGATTTGGATCAGCACGGACCGCTTTTTCTCCAACATGGCCACACTTCTCAGTCTCTCTCGCTTTCTGATATTTTTACCATCAAGGATGGATCTGTAGCACCTATACTTAAGGCAGCAAATCCCCCTGTACGTGCTAATGTTTTGCATCTGAGCACACAGTATTCGGTTCCGATATCGGAGGCTCTTAAACCTATACTCGATCCGTACTTTGATAAAGTGATTTGGTTTCAGAACTCCAGCTTGTACCATTTTAGTATGTTCCATGCCTCACACCATATTTCACCTGTTCCTGCCACTCAAGATGAGATTGAAGCCGAAGCAGCTGCTGTTAGAGCTGTCACACAGGAACTCTGCCCTTTAAAAATTGTCCTAGACAGGGTGGTTTTAACTTCAACAGGTGTGCTTCTTGGGTGCTGGCAGGTAATATCTGGATCAGATCCTATAACCATTCGTGCAAAATTGAGGACTGCACTTCCACGGGCACCAGAGAAGCAACTTTATGATGCGGCTATTCTTCATACATCATTTGCAAGGCTTCTGGGTCACCCGAAAGCATCATCCACGATGCTATCTAATACTGGGGATCAGGTCCACTTCTTCCATGGCCTTGTTGATCGTCTAAACAATGAACTCCGAGGATTTGAGGCGGTCGTATCTGAGCTCTGGTATGTTGAGGAATTTGATGTTTTGGCTCTTGCTTTGAATGGAAGAATGAAGATGCGCAGGTTCCAACTTGGCTGCTCAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.54

Weight (kDa)

8.41

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	896
Acc36I	ACCTGC	2 cut(s)	583, 888
AccB1I	GGYRCC	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	6 cut(s)	111, 142, 150, 194, 680, 821
AclWI	GGATC	7 cut(s)	89, 189, 271, 368, 605, 613, 765
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	851
AfaI	GTAC	4 cut(s)	158, 303, 380, 419
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	123, 485, 567, 877
AluBI	AGCT	5 cut(s)	23, 414, 497, 509, 835
AluI	AGCT	5 cut(s)	23, 414, 497, 509, 835
Alw21I	GWGCWC	2 cut(s)	329, 837
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	7 cut(s)	89, 189, 271, 368, 605, 613, 765
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	2 cut(s)	211, 778
ApeKI	GCWGC	4 cut(s)	287, 494, 497, 912
ApoI	RAATTY	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	76, 897
AspS9I	GGNCC	3 cut(s)	147, 191, 763
AsuHPI	GGTGA	2 cut(s)	447, 710
AvaII	GGWCC	3 cut(s)	147, 191, 763
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	329, 837
BbvI	GCAGC	4 cut(s)	299, 484, 506, 899
BccI	CCATC	3 cut(s)	160, 254, 260
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	2 cut(s)	171, 545
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	281
BfuAI	ACCTGC	2 cut(s)	583, 888
BisI	GCNGC	5 cut(s)	288, 495, 498, 681, 913
BlsI	GCNGC	5 cut(s)	289, 496, 499, 682, 914
Bme18I	GGWCC	3 cut(s)	147, 191, 763
BmgT120I	GGNCC	3 cut(s)	147, 191, 763
BmiI	GGNNCC	3 cut(s)	342, 657, 902
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	5 cut(s)	328, 667, 729, 737, 882
BmuI	ACTGGG	1 cut(s)	762
BpmI	CTGGAG	1 cut(s)	394
BpuEI	CTTGAG	2 cut(s)	456, 901
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	650, 775, 808
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	757
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	650, 775, 808
BseGI	GGATG	3 cut(s)	171, 265, 731
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	3 cut(s)	236, 314, 822
BseNI	ACTGG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	4 cut(s)	299, 484, 506, 899
BsgI	GTGCAG	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	163, 825
BshFI	GGCC	2 cut(s)	213, 780
BshNI	GGYRCC	1 cut(s)	655
BsiEI	CGRYCG	2 cut(s)	163, 825
BsiHKAI	GWGCWC	2 cut(s)	329, 837
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	213, 780
Bsp1286I	GDGCHC	3 cut(s)	329, 658, 837
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
Bsp19I	CCATGG	1 cut(s)	775
BspACI	CCGC	6 cut(s)	111, 142, 150, 194, 680, 821
BspANI	GGCC	2 cut(s)	213, 780
BspCNI	CTCAG	3 cut(s)	235, 315, 823
BspEI	TCCGGA	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	342, 657, 902
BspMI	ACCTGC	2 cut(s)	583, 888
BspPI	GGATC	7 cut(s)	89, 189, 271, 368, 605, 613, 765
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	655
BspTI	CTTAAG	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	3 cut(s)	650, 775, 808
BssMI	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
BssT1I	CCWWGG	1 cut(s)	775
Bst4CI	ACNGT	2 cut(s)	19, 333
Bst6I	CTCTTC	3 cut(s)	41, 56, 68
BstAFI	CTTAAG	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	222, 323, 831
BstDSI	CCRYGG	2 cut(s)	650, 775
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	171, 265, 731
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 897
BstKTI	GATC	9 cut(s)	84, 163, 184, 266, 376, 608, 613, 760, 790
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
BstMCI	CGRYCG	2 cut(s)	163, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 494, 506
BstPI	GGTNACC	1 cut(s)	716
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	4 cut(s)	299, 484, 506, 899
BstX2I	RGATCY	3 cut(s)	81, 263, 610
BstYI	RGATCY	3 cut(s)	81, 263, 610
BsuRI	GGCC	2 cut(s)	213, 780
BtgI	CCRYGG	2 cut(s)	650, 775
BtsCI	GGATG	3 cut(s)	171, 265, 731
BveI	ACCTGC	2 cut(s)	583, 888
Cac8I	GCNNGC	1 cut(s)	590
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	2 cut(s)	76, 897
Cfr13I	GGNCC	3 cut(s)	147, 191, 763
CpoI	CGGWCCG	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	157, 302, 379, 418
CspI	CGGWCCG	1 cut(s)	191
CviAII	CATG	3 cut(s)	209, 437, 776
CviQI	GTAC	4 cut(s)	157, 302, 379, 418
DdeI	CTNAG	3 cut(s)	222, 323, 831
DpnI	GATC	9 cut(s)	83, 162, 183, 265, 375, 607, 612, 759, 789
DpnII	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	41, 56, 68
EarI	CTCTTC	3 cut(s)	41, 56, 68
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	147, 191, 763
Eco53kI	GAGCTC	1 cut(s)	835
Eco91I	GGTNACC	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	3 cut(s)	212, 440, 779
FatI	CATG	3 cut(s)	208, 436, 775
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	288, 495, 498, 681, 913
FokI	GGATG	3 cut(s)	178, 272, 718
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	5 cut(s)	288, 495, 498, 681, 913
FspBI	CTAG	2 cut(s)	171, 545
FspI	TGCGCA	1 cut(s)	896
GlaI	GCGC	2 cut(s)	75, 896
GluI	GCNGC	5 cut(s)	288, 495, 498, 681, 913
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	213, 780
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	2 cut(s)	76, 897
Hin1II	CATG	3 cut(s)	212, 440, 779
Hin6I	GCGC	2 cut(s)	74, 895
HinP1I	GCGC	2 cut(s)	74, 895
HinfI	GANTC	3 cut(s)	4, 89, 119
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	447, 710
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188III	TCNNGA	4 cut(s)	79, 473, 603, 918
Hpy8I	GTNNAC	1 cut(s)	766
HpyCH4III	ACNGT	2 cut(s)	19, 333
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	319, 629, 644, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 494, 506
HpyF3I	CTNAG	3 cut(s)	222, 323, 831
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	212, 440, 779
HspAI	GCGC	2 cut(s)	74, 895
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	14, 81, 139
Lsp1109I	GCAGC	4 cut(s)	299, 484, 506, 899
LweI	GCATC	5 cut(s)	328, 667, 729, 737, 882
MaeI	CTAG	2 cut(s)	171, 545
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	2 cut(s)	511, 716
MalI	GATC	9 cut(s)	83, 162, 183, 265, 375, 607, 612, 759, 789
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
MboII	GAAGA	8 cut(s)	28, 43, 55, 84, 680, 763, 894, 901
MflI	RGATCY	3 cut(s)	81, 263, 610
MhlI	GDGCHC	3 cut(s)	329, 658, 837
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	5 cut(s)	100, 537, 632, 851, 922
MluNI	TGGCCA	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	8 cut(s)	38, 138, 346, 451, 630, 803, 811, 841
Mox20I	TGGCCA	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	4 cut(s)	282, 360, 533, 560
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	193, 494, 506
NcoI	CCATGG	1 cut(s)	775
NdeII	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
NlaIII	CATG	3 cut(s)	212, 440, 779
NlaIV	GGNNCC	3 cut(s)	342, 657, 902
NmuCI	GTSAC	2 cut(s)	511, 716
NsbI	TGCGCA	1 cut(s)	896
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	4, 89, 119
PkrI	GCNGC	5 cut(s)	289, 496, 499, 682, 914
Ple19I	CGATCG	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	837
PspEI	GGTNACC	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	342, 657, 902
PspPI	GGNCC	3 cut(s)	147, 191, 763
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	3 cut(s)	81, 263, 610
PvuI	CGATCG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	4 cut(s)	158, 303, 380, 419
RsaNI	GTAC	4 cut(s)	157, 302, 379, 418
Rsr2I	CGGWCCG	1 cut(s)	191
RsrII	CGGWCCG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	837
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	282, 360, 533, 560
SatI	GCNGC	5 cut(s)	288, 495, 498, 681, 913
Sau3AI	GATC	9 cut(s)	81, 160, 181, 263, 373, 605, 610, 757, 787
Sau96I	GGNCC	3 cut(s)	147, 191, 763
SduI	GDGCHC	3 cut(s)	329, 658, 837
SfaNI	GCATC	5 cut(s)	328, 667, 729, 737, 882
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	147, 191, 763
SmlI	CTYRAG	3 cut(s)	281, 471, 916
SmoI	CTYRAG	3 cut(s)	281, 471, 916
Sse9I	AATT	5 cut(s)	100, 537, 632, 851, 922
SsiI	CCGC	6 cut(s)	111, 142, 150, 194, 680, 821
SspMI	CTAG	2 cut(s)	171, 545
SstI	GAGCTC	1 cut(s)	837
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	2 cut(s)	19, 333
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	372
TasI	AATT	5 cut(s)	100, 537, 632, 851, 922
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	3 cut(s)	4, 89, 119
Tru1I	TTAA	4 cut(s)	282, 360, 533, 560
Tru9I	TTAA	4 cut(s)	282, 360, 533, 560
TseFI	GTSAC	2 cut(s)	511, 716
TseI	GCWGC	4 cut(s)	287, 494, 497, 912
Tsp45I	GTSAC	2 cut(s)	511, 716
TspDTI	ATGAA	4 cut(s)	17, 680, 816, 902
TspGWI	ACGGA	2 cut(s)	204, 366
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	147, 191, 763
XapI	RAATTY	1 cut(s)	851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	773
XspI	CTAG	2 cut(s)	171, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.