Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Reverse (-)

2668916 .. 2671829

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG039700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCATCACTCGAAAACGGTAGCTCTGCTCTGGCTCACCTCCGCCTTGCTCTTCTTCTCTCTCTTCCAAATGGCCCGCCGGGACTCCGACACGGCACCCTCCGGCGCGGGTTCTGTGATTCCGATCAGGGATCGGAGGTCGGCATTGTACGAGAAGATGGCAGGGGATTTGGACGAGAAAGGTCCGCTGTTTCTGAATCACGGCCACACCTCCCAGTCCCTGTCGCTCTCCGACATTTTTACGGTGAAGGATGATGGATCCGTGGCACCTGTGCTCAAGGCAGCAAATCCTCCCGTTCGTGCGAATGTGTTGTATCTGAGCACACAGTACTCGGTTCGAATCTCGGAGGTGCTCAAACCTATTCTTGATCCGTACTTTGATAAATTCATCTGGTTTCAGAACTCAAGTTTGTATCATTTTAGTATGTTCCATGCCTCGCATCATATTTCACCTGTTCCTGCGACCCAAGATGAGATTGAAGCTGAAGCAGCCGCTGTTAGAGCTGTTGTAGAAGGCCTGTGCCCTTTAAAGATTGTCTTGGACAGAGTGGTTTTAACCTCAACAGGTGTGCTTCTTGGATGCTGGCAGGTAATGTCTGGATCAGATCCTATGACTGTCCGAGCAAAACTAAGGACCGCACTTCCACGTGCCCCTGAGAAGCAACTTTATGATGTTGCTATTCTTCATACATCATTTGCAAGGCTTTTGGGCGAGCCGAAGGCATCATCCATGGTCCTCTCTAGTACTTTGGATCAAATCCACTTCTTTCATGAGCTTGTTGATCGTATAAACAAAGAACTTCAAGGATTTGAGGCAGTGGTTACTGAGCTCTGGTATGTGGAGGAATTCGACGTTTTGGCCCTTGCGTTGAATGGGAGAATGAAGGTGCGCAAGTTCCAACTTGGGTGCTCAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.14

Weight (kDa)

6.87

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	2 cut(s)	94, 265
AccII	CGCG	1 cut(s)	107
AciI	CCGC	6 cut(s)	42, 76, 107, 185, 492, 636
AclWI	GGATC	7 cut(s)	138, 252, 265, 362, 599, 607, 759
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	383, 845
AcuI	CTGAAG	1 cut(s)	504
AcvI	CACGTG	1 cut(s)	647
AfaI	GTAC	4 cut(s)	149, 329, 374, 745
AgsI	TTSAA	3 cut(s)	479, 803, 871
AluBI	AGCT	5 cut(s)	23, 482, 503, 775, 829
AluI	AGCT	5 cut(s)	23, 482, 503, 775, 829
Alw21I	GWGCWC	5 cut(s)	276, 323, 354, 831, 911
AlwI	GGATC	7 cut(s)	138, 252, 265, 362, 599, 607, 759
AlwNI	CAGNNNCTG	2 cut(s)	220, 494
AoxI	GGCC	4 cut(s)	72, 202, 514, 858
ApeKI	GCWGC	2 cut(s)	281, 488
ApoI	RAATTY	2 cut(s)	383, 845
AspLEI	GCGC	2 cut(s)	107, 891
AspS9I	GGNCC	5 cut(s)	73, 182, 633, 733, 859
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	28, 256, 441
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	3 cut(s)	182, 633, 733
BaeGI	GKGCMC	2 cut(s)	524, 652
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	94, 265
BanII	GRGCYC	1 cut(s)	831
BbrPI	CACGTG	1 cut(s)	647
Bbv12I	GWGCWC	5 cut(s)	276, 323, 354, 831, 911
BbvI	GCAGC	2 cut(s)	293, 500
BccI	CCATC	2 cut(s)	151, 248
BceAI	ACGGC	2 cut(s)	108, 217
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	282, 489, 492
BlsI	GCNGC	3 cut(s)	283, 490, 493
BmcAI	AGTACT	2 cut(s)	329, 745
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	3 cut(s)	182, 633, 733
BmgT120I	GGNCC	5 cut(s)	73, 182, 633, 733, 859
BmiI	GGNNCC	3 cut(s)	96, 259, 267
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	4 cut(s)	13, 448, 569, 731
BmuI	ACTGGG	1 cut(s)	208
Bpu14I	TTCGAA	1 cut(s)	337
BpuEI	CTTGAG	3 cut(s)	260, 388, 895
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	261, 729
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	261, 729
BseGI	GGATG	3 cut(s)	256, 584, 725
BseJI	GATNNNNATC	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	308, 645, 816
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	2 cut(s)	524, 652
BseXI	GCAGC	2 cut(s)	293, 500
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	4 cut(s)	74, 204, 516, 860
BshNI	GGYRCC	2 cut(s)	94, 265
BsiHKAI	GWGCWC	5 cut(s)	276, 323, 354, 831, 911
BsiSI	CCGG	2 cut(s)	79, 102
BslFI	GGGAC	2 cut(s)	95, 202
BsmFI	GGGAC	2 cut(s)	95, 202
BsnI	GGCC	4 cut(s)	74, 204, 516, 860
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	7 cut(s)	276, 323, 354, 524, 652, 831, 911
Bsp143I	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	6 cut(s)	42, 76, 107, 185, 492, 636
BspANI	GGCC	4 cut(s)	74, 204, 516, 860
BspCNI	CTCAG	3 cut(s)	309, 646, 817
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	3 cut(s)	96, 259, 267
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	7 cut(s)	138, 252, 265, 362, 599, 607, 759
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	94, 265
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	261, 729
BssMI	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	4 cut(s)	19, 244, 327, 616
Bst6I	CTCTTC	2 cut(s)	56, 68
BstBAI	YACGTR	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	76, 584, 713
BstDEI	CTNAG	4 cut(s)	317, 629, 654, 825
BstDSI	CCRYGG	2 cut(s)	261, 729
BstF5I	GGATG	3 cut(s)	256, 584, 725
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	107, 891
BstKTI	GATC	8 cut(s)	126, 133, 260, 370, 602, 607, 754, 784
BstMBI	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 500
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	2 cut(s)	524, 652
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	293, 500
BstX2I	RGATCY	2 cut(s)	257, 604
BstYI	RGATCY	2 cut(s)	257, 604
BsuRI	GGCC	4 cut(s)	74, 204, 516, 860
BtgI	CCRYGG	2 cut(s)	261, 729
BtsCI	GGATG	3 cut(s)	256, 584, 725
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	76, 584, 713
CaiI	CAGNNNCTG	2 cut(s)	220, 494
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	2 cut(s)	107, 891
Cfr13I	GGNCC	5 cut(s)	73, 182, 633, 733, 859
Csp6I	GTAC	4 cut(s)	148, 328, 373, 744
CviAII	CATG	3 cut(s)	431, 730, 770
CviQI	GTAC	4 cut(s)	148, 328, 373, 744
DdeI	CTNAG	4 cut(s)	317, 629, 654, 825
DpnI	GATC	8 cut(s)	125, 132, 259, 369, 601, 606, 753, 783
DpnII	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
DraI	TTTAAA	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	56, 68
EarI	CTCTTC	2 cut(s)	56, 68
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	3 cut(s)	182, 633, 733
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	829
EcoRI	GAATTC	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	3 cut(s)	434, 733, 773
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	2 cut(s)	95, 202
FatI	CATG	3 cut(s)	430, 729, 769
FauI	CCCGC	2 cut(s)	83, 100
Fnu4HI	GCNGC	3 cut(s)	282, 489, 492
FokI	GGATG	3 cut(s)	263, 591, 712
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	282, 489, 492
FspBI	CTAG	1 cut(s)	741
FspI	TGCGCA	1 cut(s)	890
GlaI	GCGC	2 cut(s)	106, 890
GluI	GCNGC	3 cut(s)	282, 489, 492
HaeIII	GGCC	4 cut(s)	74, 204, 516, 860
HapII	CCGG	2 cut(s)	79, 102
HhaI	GCGC	2 cut(s)	107, 891
Hin1II	CATG	3 cut(s)	434, 733, 773
Hin6I	GCGC	2 cut(s)	105, 889
HinP1I	GCGC	2 cut(s)	105, 889
HinfI	GANTC	4 cut(s)	83, 118, 196, 339
HpaII	CCGG	2 cut(s)	79, 102
HphI	GGTGA	3 cut(s)	28, 256, 441
Hpy188III	TCNNGA	4 cut(s)	365, 597, 770, 912
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	4 cut(s)	241, 506, 712, 877
HpyCH4III	ACNGT	4 cut(s)	19, 244, 327, 616
HpyCH4IV	ACGT	2 cut(s)	646, 852
HpyCH4V	TGCA	2 cut(s)	4, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 500
HpyF3I	CTNAG	4 cut(s)	317, 629, 654, 825
HpySE526I	ACGT	2 cut(s)	646, 852
Hsp92II	CATG	3 cut(s)	434, 733, 773
HspAI	GCGC	2 cut(s)	105, 889
Kzo9I	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
LguI	GCTCTTC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	293, 500
LweI	GCATC	4 cut(s)	13, 448, 569, 731
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	2 cut(s)	646, 852
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	8 cut(s)	125, 132, 259, 369, 601, 606, 753, 783
MboI	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
MboII	GAAGA	5 cut(s)	43, 46, 55, 166, 674
MflI	RGATCY	2 cut(s)	257, 604
MhlI	GDGCHC	7 cut(s)	276, 323, 354, 524, 652, 831, 911
MluCI	AATT	2 cut(s)	383, 845
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 255
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	527, 554
MspA1I	CMGCKG	2 cut(s)	187, 494
MspI	CCGG	2 cut(s)	79, 102
MspR9I	CCNGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	488, 500
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	729
NdeII	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
NlaIII	CATG	3 cut(s)	434, 733, 773
NlaIV	GGNNCC	3 cut(s)	96, 259, 267
NsbI	TGCGCA	1 cut(s)	890
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	337
PagI	TCATGA	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	118, 196, 339
PkrI	GCNGC	3 cut(s)	283, 490, 493
PleI	GAGTC	1 cut(s)	77
PmaCI	CACGTG	1 cut(s)	647
PmlI	CACGTG	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	831
PspCI	CACGTG	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	96, 259, 267
PspPI	GGNCC	5 cut(s)	73, 182, 633, 733, 859
PstNI	CAGNNNCTG	2 cut(s)	220, 494
PsuI	RGATCY	2 cut(s)	257, 604
RsaI	GTAC	4 cut(s)	149, 329, 374, 745
RsaNI	GTAC	4 cut(s)	148, 328, 373, 744
SacI	GAGCTC	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	527, 554
SatI	GCNGC	3 cut(s)	282, 489, 492
Sau3AI	GATC	8 cut(s)	123, 130, 257, 367, 599, 604, 751, 781
Sau96I	GGNCC	5 cut(s)	73, 182, 633, 733, 859
ScaI	AGTACT	2 cut(s)	329, 745
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	7 cut(s)	276, 323, 354, 524, 652, 831, 911
SfaNI	GCATC	4 cut(s)	13, 448, 569, 731
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	3 cut(s)	182, 633, 733
SmlI	CTYRAG	3 cut(s)	275, 403, 910
SmoI	CTYRAG	3 cut(s)	275, 403, 910
Sse9I	AATT	2 cut(s)	383, 845
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	6 cut(s)	42, 76, 107, 185, 492, 636
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	831
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	4 cut(s)	19, 244, 327, 616
TaiI	ACGT	2 cut(s)	649, 855
TaqI	TCGA	3 cut(s)	11, 337, 849
TasI	AATT	2 cut(s)	383, 845
TatI	WGTACW	2 cut(s)	327, 743
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	3 cut(s)	118, 196, 339
Tru1I	TTAA	2 cut(s)	527, 554
Tru9I	TTAA	2 cut(s)	527, 554
TscAI	CASTG	1 cut(s)	822
TseI	GCWGC	2 cut(s)	281, 488
TspDTI	ATGAA	4 cut(s)	376, 674, 758, 896
TspGWI	ACGGA	2 cut(s)	250, 360
TspRI	CASTG	1 cut(s)	822
VpaK11BI	GGWCC	3 cut(s)	182, 633, 733
XapI	RAATTY	2 cut(s)	383, 845
XspI	CTAG	1 cut(s)	741
ZrmI	AGTACT	2 cut(s)	329, 745
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.