Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Reverse (-)

57205880 .. 57208903

Gene Structure 3024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0438500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGACTCGGCCGCCGGCAAGCCCAAGAAGTCCGGCGCTCGCCAGTGCTGCATCTGTAACCAGAAAAGAGCTGCTCTCAAGAGGCCCAAAACCCTAGAACAGATTTGCAGGGAGTGTTTCTATGAGGTATTTGAGGAGGAGATACATCAGGTGATTGTTGAAAACCAGTTGTTTAAGCCCGGTGAACGCATTGCCATTGGTGCCTCCGGTGGAAAAGATTCCACTGTTCTTGCCTATGTATTATCGGAATTGAATAAGCGGCACAATTATGGGTTGGATCTCTTCCTGTTGTCTGTGGATGAGGGCATTACAGGCTACAGGGATGATTCGCTTGAAACCGTCAAAAGAAATGAAATGCAGTATGGATTGCCGTTAAAGATTGTGTCGTACAAGGATTTGTATGGGTGGACGATGGATGAAATAGTAAAGATGATTGGTCTCAAGAATAATTGCACATTTTGTGGTGTTTTTCGTCGTCAGGCCCTTGATCGCGGTGCTGCATTGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCCGATGATATAGCTGAAACAGTTCTATTGAACATATTACGTGGTGATATTGCTAGATTGAGTAGATGCACTTCAATTGTCACTGGTGAAGATGGACCAATTCCAAGATGCAAACCTTTTAAATACACCTATGAGAAGGAAATTGTTATGTATGCATACTTCAAGAGGCTGGATTACTTCTCCACTGAATGCATTTATTCACCAAATGCTTATCGTGGTTTTGCTCGTGAATTCATCAAAGATTTGGAAAGAGTCAGACCTAGGGCCATACTTGACATAATCAAATCAGGGGAGAATTTCAGAATTTCTACTTCTACAAAAATGCCGGAACAGGGGACATGTGAACGCTGTGGTTACATTTCAAGCCAGAAATGGTGTAAAGCTTGTGTATTGCTTGAGGGACTGAATAGGGGTTTGCCAAAGATGGGAATTGGTCGGAATCGAGGAATTAACAACAATCAGAAGAAGGATATGAAACAAAGTAATGCAACAAAAAGTATAGAGAGCAAACAATGTGGGACTTTGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

40.47

Weight (kDa)

8.96

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_3	PF01171	65 - 248	1.3e-14	PP-loop domain
zn-ribbon_14	PF16503	292 - 322	1.7e-18	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	495
AciI	CCGC	3 cut(s)	15, 262, 495
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	770, 835, 843
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	872, 965
AflIII	ACRYGT	1 cut(s)	878
AgsI	TTSAA	8 cut(s)	164, 256, 338, 511, 571, 615, 703, 903
AluBI	AGCT	4 cut(s)	74, 523, 554, 923
AluI	AGCT	4 cut(s)	74, 523, 554, 923
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	4 cut(s)	12, 86, 483, 804
ApeKI	GCWGC	3 cut(s)	51, 74, 500
ApoI	RAATTY	3 cut(s)	770, 835, 843
Asp700I	GAANNNNTTC	2 cut(s)	220, 561
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	87, 484, 635, 804
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	5 cut(s)	166, 197, 596, 638, 732
AvaII	GGWCC	1 cut(s)	635
AvrII	CCTAGG	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	4 cut(s)	595, 627, 683, 715
BauI	CACGAG	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	38, 61, 487
BccI	CCATC	3 cut(s)	409, 626, 958
BceAI	ACGGC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	98, 594, 801
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	5 cut(s)	15, 52, 75, 263, 501
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	5 cut(s)	16, 53, 76, 264, 502
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	4 cut(s)	87, 484, 635, 804
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	63, 596, 638
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpuEI	CTTGAG	3 cut(s)	65, 428, 956
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	800
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 965
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	46, 169, 535, 628
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	800
BseGI	GGATG	3 cut(s)	307, 331, 424
BseLI	CCNNNNNNNGG	2 cut(s)	872, 965
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	4 cut(s)	46, 169, 535, 628
BseRI	GAGGAG	2 cut(s)	152, 155
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	38, 61, 487
Bsh1236I	CGCG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	14, 88, 485, 806
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	18, 36, 183, 210, 866
BslFI	GGGAC	2 cut(s)	889, 954
BslI	CCNNNNNNNGG	2 cut(s)	872, 965
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	889, 954
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	4 cut(s)	14, 88, 485, 806
Bso31I	GGTCTC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	280, 490
BspACI	CCGC	3 cut(s)	15, 262, 495
BspANI	GGCC	4 cut(s)	14, 88, 485, 806
BspFNI	CGCG	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	46, 169, 535, 628
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	800
BssMI	GATC	2 cut(s)	280, 490
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	800
Bst2BI	CACGAG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	229, 343, 562
Bst6I	CTCTTC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	4 cut(s)	19, 23, 43, 525
BstF5I	GGATG	3 cut(s)	307, 331, 424
BstFNI	CGCG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	283, 493
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	280, 490
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 203, 315
BstNSI	RCATGY	1 cut(s)	882
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	3 cut(s)	38, 61, 487
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	4 cut(s)	14, 88, 485, 806
BtsCI	GGATG	3 cut(s)	307, 331, 424
BtsIMutI	CAGTG	4 cut(s)	53, 225, 621, 723
Cac8I	GCNNGC	4 cut(s)	19, 23, 43, 525
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	4 cut(s)	87, 484, 635, 804
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	4 cut(s)	214, 249, 1036, 1071
CviAII	CATG	1 cut(s)	879
CviQI	GTAC	1 cut(s)	391
DpnI	GATC	2 cut(s)	282, 492
DpnII	GATC	2 cut(s)	280, 490
DraI	TTTAAA	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	800
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	635
Eco52I	CGGCCG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	800
EcoT22I	ATGCAT	2 cut(s)	697, 734
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	1 cut(s)	882
FaqI	GGGAC	2 cut(s)	889, 954
FatI	CATG	1 cut(s)	878
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	15, 52, 75, 263, 501
FokI	GGATG	3 cut(s)	314, 338, 431
Fsp4HI	GCNGC	5 cut(s)	15, 52, 75, 263, 501
FspBI	CTAG	3 cut(s)	98, 594, 801
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	15, 52, 75, 263, 501
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	14, 88, 485, 806
HapII	CCGG	5 cut(s)	18, 36, 183, 210, 866
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	882
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	2 cut(s)	521, 921
HinfI	GANTC	5 cut(s)	8, 221, 329, 792, 979
HpaII	CCGG	5 cut(s)	18, 36, 183, 210, 866
HphI	GGTGA	5 cut(s)	166, 197, 596, 638, 732
Hpy166II	GTNNAC	4 cut(s)	188, 411, 517, 884
Hpy188I	TCNGA	6 cut(s)	250, 797, 842, 978, 1002, 1073
Hpy188III	TCNNGA	4 cut(s)	82, 445, 703, 767
Hpy8I	GTNNAC	4 cut(s)	188, 411, 517, 884
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	2 cut(s)	670, 1000
HpyCH4III	ACNGT	3 cut(s)	229, 343, 562
HpyCH4IV	ACGT	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 203, 315
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	882
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	280, 490
Lsp1109I	GCAGC	3 cut(s)	38, 61, 487
LweI	GCATC	3 cut(s)	63, 596, 638
MaeI	CTAG	3 cut(s)	98, 594, 801
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	3 cut(s)	59, 619, 893
MalI	GATC	2 cut(s)	282, 492
MboI	GATC	2 cut(s)	280, 490
MboII	GAAGA	4 cut(s)	17, 277, 641, 1015
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	2, 801
MmeI	TCCRAC	2 cut(s)	258, 956
MnlI	CCTC	9 cut(s)	78, 121, 130, 133, 217, 298, 699, 931, 977
Mph1103I	ATGCAT	2 cut(s)	697, 734
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	220, 561
MseI	TTAA	4 cut(s)	177, 377, 660, 990
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	5 cut(s)	18, 36, 183, 210, 866
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	734
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	51, 203, 315
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	280, 490
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	882
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	2 cut(s)	697, 734
NspI	RCATGY	1 cut(s)	882
PciI	ACATGT	1 cut(s)	878
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	2 cut(s)	220, 561
PfeI	GAWTC	3 cut(s)	221, 329, 979
PkrI	GCNGC	5 cut(s)	16, 53, 76, 264, 502
PleI	GAGTC	2 cut(s)	2, 800
PpsI	GAGTC	2 cut(s)	2, 800
Ppu21I	YACGTR	1 cut(s)	581
PscI	ACATGT	1 cut(s)	878
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	4 cut(s)	87, 484, 635, 804
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	177, 377, 660, 990
SatI	GCNGC	5 cut(s)	15, 52, 75, 263, 501
Sau3AI	GATC	2 cut(s)	280, 490
Sau96I	GGNCC	4 cut(s)	87, 484, 635, 804
SchI	GAGTC	2 cut(s)	2, 801
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	63, 596, 638
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	3 cut(s)	80, 443, 935
SmoI	CTYRAG	3 cut(s)	80, 443, 935
SsiI	CCGC	3 cut(s)	15, 262, 495
SspMI	CTAG	3 cut(s)	98, 594, 801
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	3 cut(s)	229, 343, 562
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	982
TauI	GCSGC	2 cut(s)	17, 265
TfiI	GAWTC	3 cut(s)	221, 329, 979
Tru1I	TTAA	4 cut(s)	177, 377, 660, 990
Tru9I	TTAA	4 cut(s)	177, 377, 660, 990
TscAI	CASTG	4 cut(s)	53, 232, 628, 730
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	51, 74, 500
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	369, 435, 763, 1028
TspRI	CASTG	4 cut(s)	53, 232, 628, 730
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	3 cut(s)	770, 835, 843
XceI	RCATGY	1 cut(s)	882
XmaJI	CCTAGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	2 cut(s)	220, 561
XspI	CTAG	3 cut(s)	98, 594, 801
Zsp2I	ATGCAT	2 cut(s)	697, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.