Rroxscaffold_3G00272340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009028
Physical Location & Seq
Forward (+)
64473141 .. 64477933
4793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272340.1

Sequence Viewer

Length: 933 bp
ATGCATCACTCGAAAACGGTAGCTCTGCTCTGGCTCACCTCCGCCTTGCTCTTCTTCTCTCTCTTCCAAATGGCCCGCCGGGACTCCGATACGACACGCAATAATTACCCCTCCGGCACGGATTCCGTGATTCCGATCAGGGATCGGAGGTCGGCATTGTACGAGAAGATGGCTAGGGATTTGGACGAGAAAGGTCCGCTGTTTCTGAAACACGGCCACACCTCTCAGTCTCTGTCGCTCTCCGACATTTTTACGGTGAAGGACGATGGATCCGTGGCACCTGTGCTCAAGGCAGCAAATCCTCCTGTTCGTGCTAATGTGTTGTATCTGAGCACACAGTTCTCGGTTCGAATCTCGGAGGTGCTCAAACCTATTCTTGATCCGTACTTTGATAAATTGATCTCGTTTCAGAACTCAAGTTTGTATCATTTTAGTATGTTCCACGCCTCGCATCATATTTCACCTGTTCCTGCGACCCAAGATGAGATTGAAGCTGAAGCAGCTGCTGTTAGAGCTGTTGTAGAAGGCCTGTGCCCTTTAAAGATTGTCTTGGACAGAGTGGTTTTAACTTCAACAGGTGTGCTTCTTGGATGCTGGCAGGTAATGTCTGGATCAGATCCTATGACTGTCCGAGCAAAACTAAGGACCGCACTTCCACGTGCACCTGAGAAGCAACTTTATGATGTTGCTATTCTTCATACATCATTTGCAAGGCTTTTGGGCGAGCCGAAGGCACCATCCATGGTGCTCTCTAGTACTTCGGATCAAATCAACTTCTTTCATGAGCTTGTTGATAGTATAAACAAAGAACTCCAAGGATTTGAGGCAGTGGTTACCGAGCTCTGGTATGTGGAGGAATTCGACGTTTTGGCCCTTGCATTGAACGGAAGAATGAAGGTGCGCAAGTTCCAACTTGGGTGCTCAAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.66

Weight (kDa)

7.19

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 902
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 2 cut(s) 277, 733
AciI CCGC 4 cut(s) 42, 76, 197, 648
AclWI GGATC 7 cut(s) 150, 264, 277, 374, 611, 619, 771
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 516
AcvI CACGTG 1 cut(s) 659
AfaI GTAC 3 cut(s) 161, 386, 757
AfiI CCNNNNNNNGG 1 cut(s) 843
AgsI TTSAA 3 cut(s) 491, 573, 883
AluBI AGCT 6 cut(s) 23, 494, 503, 515, 787, 841
AluI AGCT 6 cut(s) 23, 494, 503, 515, 787, 841
Alw21I GWGCWC 7 cut(s) 288, 335, 366, 664, 750, 843, 923
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 7 cut(s) 150, 264, 277, 374, 611, 619, 771
AlwNI CAGNNNCTG 2 cut(s) 232, 506
AoxI GGCC 4 cut(s) 72, 214, 526, 870
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 3 cut(s) 293, 500, 503
ApoI RAATTY 1 cut(s) 857
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 4 cut(s) 73, 194, 645, 871
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 28, 268, 453
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 2 cut(s) 194, 645
BaeGI GKGCMC 2 cut(s) 536, 664
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 2 cut(s) 277, 733
BanII GRGCYC 1 cut(s) 843
BbrPI CACGTG 1 cut(s) 659
Bbv12I GWGCWC 7 cut(s) 288, 335, 366, 664, 750, 843, 923
BbvI GCAGC 3 cut(s) 305, 490, 512
BccI CCATC 3 cut(s) 163, 260, 745
BceAI ACGGC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 174, 753
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 3 cut(s) 294, 501, 504
BlsI GCNGC 3 cut(s) 295, 502, 505
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 194, 645
BmgT120I GGNCC 4 cut(s) 73, 194, 645, 871
BmiI GGNNCC 3 cut(s) 271, 279, 735
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 3 cut(s) 13, 460, 581
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 3 cut(s) 272, 400, 907
BpuMI CCSGG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 273, 741, 814
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse8I GATNNNNATC 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 273, 741, 814
BseGI GGATG 2 cut(s) 596, 737
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 239, 320, 657
BseSI GKGCMC 2 cut(s) 536, 664
BseXI GCAGC 3 cut(s) 305, 490, 512
BshFI GGCC 4 cut(s) 74, 216, 528, 872
BshNI GGYRCC 2 cut(s) 277, 733
BsiHKAI GWGCWC 7 cut(s) 288, 335, 366, 664, 750, 843, 923
BsiSI CCGG 2 cut(s) 79, 114
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 4 cut(s) 74, 216, 528, 872
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 8 cut(s) 288, 335, 366, 536, 664, 750, 843, 923
Bsp143I GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 4 cut(s) 42, 76, 197, 648
BspANI GGCC 4 cut(s) 74, 216, 528, 872
BspCNI CTCAG 3 cut(s) 238, 321, 658
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 3 cut(s) 271, 279, 735
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 7 cut(s) 150, 264, 277, 374, 611, 619, 771
BspQI GCTCTTC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 277, 733
BssECI CCNNGG 3 cut(s) 273, 741, 814
BssMI GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
BssT1I CCWWGG 2 cut(s) 741, 814
Bst4CI ACNGT 4 cut(s) 19, 256, 339, 628
Bst6I CTCTTC 2 cut(s) 56, 68
BstBAI YACGTR 1 cut(s) 659
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 76, 596, 725
BstDEI CTNAG 4 cut(s) 225, 329, 641, 666
BstDSI CCRYGG 2 cut(s) 273, 741
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 2 cut(s) 596, 737
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 8 cut(s) 138, 145, 272, 382, 402, 614, 619, 766
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
BstMWI GCNNNNNNNGC 2 cut(s) 500, 512
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 78
BstSLI GKGCMC 2 cut(s) 536, 664
BstV1I GCAGC 3 cut(s) 305, 490, 512
BstX2I RGATCY 2 cut(s) 269, 616
BstYI RGATCY 2 cut(s) 269, 616
BsuRI GGCC 4 cut(s) 74, 216, 528, 872
BtgI CCRYGG 2 cut(s) 273, 741
BtsCI GGATG 2 cut(s) 596, 737
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 1 cut(s) 834
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 3 cut(s) 76, 596, 725
CaiI CAGNNNCTG 2 cut(s) 232, 506
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 903
Cfr13I GGNCC 4 cut(s) 73, 194, 645, 871
Csp6I GTAC 3 cut(s) 160, 385, 756
CviAII CATG 2 cut(s) 742, 782
CviQI GTAC 3 cut(s) 160, 385, 756
DdeI CTNAG 4 cut(s) 225, 329, 641, 666
DpnI GATC 8 cut(s) 137, 144, 271, 381, 401, 613, 618, 765
DpnII GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
DraI TTTAAA 1 cut(s) 540
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 56, 68
EarI CTCTTC 2 cut(s) 56, 68
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 741, 814
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 2 cut(s) 194, 645
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 516
Eco72I CACGTG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 841
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 857
EcoT14I CCWWGG 2 cut(s) 741, 814
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 741, 814
FaeI CATG 2 cut(s) 745, 785
FaiI YATR 9 cut(s) 437, 456, 623, 681, 699, 743, 783, 800, 849
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 741, 781
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 294, 501, 504
FokI GGATG 2 cut(s) 603, 724
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 294, 501, 504
FspBI CTAG 2 cut(s) 174, 753
FspI TGCGCA 1 cut(s) 902
GlaI GCGC 1 cut(s) 902
GluI GCNGC 3 cut(s) 294, 501, 504
HaeIII GGCC 4 cut(s) 74, 216, 528, 872
HapII CCGG 2 cut(s) 79, 114
HhaI GCGC 1 cut(s) 903
Hin1II CATG 2 cut(s) 745, 785
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HinfI GANTC 4 cut(s) 83, 122, 130, 351
HpaII CCGG 2 cut(s) 79, 114
HphI GGTGA 3 cut(s) 28, 268, 453
Hpy166II GTNNAC 1 cut(s) 662
Hpy188III TCNNGA 4 cut(s) 377, 609, 782, 924
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 4 cut(s) 253, 518, 724, 889
HpyCH4III ACNGT 4 cut(s) 19, 256, 339, 628
HpyCH4IV ACGT 2 cut(s) 658, 864
HpyCH4V TGCA 4 cut(s) 4, 662, 710, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 512
HpyF3I CTNAG 4 cut(s) 225, 329, 641, 666
HpySE526I ACGT 2 cut(s) 658, 864
Hsp92II CATG 2 cut(s) 745, 785
HspAI GCGC 1 cut(s) 901
Kzo9I GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
LguI GCTCTTC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 305, 490, 512
LweI GCATC 3 cut(s) 13, 460, 581
MaeI CTAG 2 cut(s) 174, 753
MaeII ACGT 2 cut(s) 658, 864
MaeIII GTNAC 1 cut(s) 832
MalI GATC 8 cut(s) 137, 144, 271, 381, 401, 613, 618, 765
MboI GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
MboII GAAGA 6 cut(s) 43, 46, 55, 178, 686, 900
MflI RGATCY 2 cut(s) 269, 616
MhlI GDGCHC 8 cut(s) 288, 335, 366, 536, 664, 750, 843, 923
MluCI AATT 3 cut(s) 103, 395, 857
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 9 cut(s) 49, 121, 141, 232, 312, 352, 457, 817, 847
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 539, 566
MspA1I CMGCKG 2 cut(s) 199, 503
MspI CCGG 2 cut(s) 79, 114
MspR9I CCNGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 500, 512
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 741
NdeII GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
NlaIII CATG 2 cut(s) 745, 785
NlaIV GGNNCC 3 cut(s) 271, 279, 735
NsbI TGCGCA 1 cut(s) 902
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 349
PagI TCATGA 1 cut(s) 781
PceI AGGCCT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 3 cut(s) 122, 130, 351
PkrI GCNGC 3 cut(s) 295, 502, 505
PleI GAGTC 1 cut(s) 77
PmaCI CACGTG 1 cut(s) 659
PmlI CACGTG 1 cut(s) 659
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 843
PspCI CACGTG 1 cut(s) 659
PspEI GGTNACC 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 271, 279, 735
PspPI GGNCC 4 cut(s) 73, 194, 645, 871
PstNI CAGNNNCTG 2 cut(s) 232, 506
PsuI RGATCY 2 cut(s) 269, 616
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 3 cut(s) 161, 386, 757
RsaNI GTAC 3 cut(s) 160, 385, 756
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 539, 566
SatI GCNGC 3 cut(s) 294, 501, 504
Sau3AI GATC 8 cut(s) 135, 142, 269, 379, 399, 611, 616, 763
Sau96I GGNCC 4 cut(s) 73, 194, 645, 871
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 8 cut(s) 288, 335, 366, 536, 664, 750, 843, 923
SfaNI GCATC 3 cut(s) 13, 460, 581
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 2 cut(s) 194, 645
SmlI CTYRAG 3 cut(s) 287, 415, 922
SmoI CTYRAG 3 cut(s) 287, 415, 922
Sse9I AATT 3 cut(s) 103, 395, 857
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 4 cut(s) 42, 76, 197, 648
SspMI CTAG 2 cut(s) 174, 753
SstI GAGCTC 1 cut(s) 843
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 741, 814
TaaI ACNGT 4 cut(s) 19, 256, 339, 628
TaiI ACGT 2 cut(s) 661, 867
TaqI TCGA 3 cut(s) 11, 349, 861
TasI AATT 3 cut(s) 103, 395, 857
TatI WGTACW 1 cut(s) 755
TfiI GAWTC 3 cut(s) 122, 130, 351
Tru1I TTAA 2 cut(s) 539, 566
Tru9I TTAA 2 cut(s) 539, 566
TscAI CASTG 1 cut(s) 834
TseI GCWGC 3 cut(s) 293, 500, 503
TspDTI ATGAA 3 cut(s) 686, 770, 908
TspGWI ACGGA 5 cut(s) 115, 134, 262, 372, 900
TspRI CASTG 1 cut(s) 834
VneI GTGCAC 1 cut(s) 660
VpaK11BI GGWCC 2 cut(s) 194, 645
XapI RAATTY 1 cut(s) 857
XspI CTAG 2 cut(s) 174, 753
ZrmI AGTACT 1 cut(s) 757
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.