Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Reverse (-)

21066133 .. 21068803

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16980.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAATTGCTCCAAGACCGTAGTTTTCATCTGGCTCCTCTACGCCTTGCTCTTCTACGCTCTCTTCCAAATGGCCCTCCGGAACTCCGACTCCTCACGCAATTACACCTCTGCCTCCGATTCTGTAATTTCGAACAAGGAGCGGAGGTCGGCATTGTACGATCAGATGGGTCGGGATTTGGCTGAGCACGGACCGGTTTTTCTCAAACACGGCGGCCAGACCTCCCAGTCTCTGTCCCTTTCTGATATTTTTACTATCAGGGATGGATCTGTAGCACCTGTACTTAAGGCAGCAAATCCTCCTGTTCGTGCTAATGTGTTGTATCTGAGCACACAGTATTCGCTTCCGATTTTGAAGGCGCTCAAACCTATACTCGATCCTTACTTTGATGAAGCGATCTGGTTTCAGAACTCAAGTTTATATCATTTTAGTATGTTTCATTCCTCGCATCATATTTCACCTGTTCCTGCTACTCCAGATGAGATTGAAGCTGAAGCAGCTGCCGTTAGGAATACTGCAGAGGGTCTCTGCCCTTTGAAAATTGTCTTGGACAGGGTGGTCTTAACTTCAACGGGTGTGCTTCTTGGGTGCTGGCAGGTAACCTCTGGATCAGATCCTGTAACCATTCGAGAAAAATTGAGGACCGCGCTTCCACATGCACCAGAAAAGCAACTTTATGATGCTGCTATTCTTCATACTTCATTTGCAAGGCTTCTTGGTCACCCCAAAGCATCATCCACGGTGCTATCTAATACTTCAGAACAAGTCCACTTCTTCCAAGAGCTTGTTAATCGTCTAAACAATGAACTCCAAGGATTTGAGGCTGTGGTATCTGAGCTCTGGTATGTCGAGGAATTTGACGTTTTGGCTCTGGCATTGAACGGAAGAATGAAGGTTCGCAAGTTTCAACTTGGCTGCTCAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

6.8

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	226, 557
Acc36I	ACCTGC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	647
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	3 cut(s)	142, 213, 645
AclWI	GGATC	4 cut(s)	274, 371, 608, 616
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	2 cut(s)	513, 741
AfaI	GTAC	2 cut(s)	158, 282
AflII	CTTAAG	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	193
AgsI	TTSAA	6 cut(s)	355, 488, 538, 570, 880, 908
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	491, 500, 784, 838
AluI	AGCT	4 cut(s)	491, 500, 784, 838
Alw21I	GWGCWC	3 cut(s)	189, 332, 840
Alw26I	GTCTC	2 cut(s)	234, 530
AlwI	GGATC	4 cut(s)	274, 371, 608, 616
AlwNI	CAGNNNCTG	2 cut(s)	232, 617
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	2 cut(s)	72, 214
ApeKI	GCWGC	5 cut(s)	290, 497, 500, 683, 915
ApoI	RAATTY	1 cut(s)	854
AsiGI	ACCGGT	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	361, 649
AspS9I	GGNCC	3 cut(s)	73, 191, 642
AsuHPI	GGTGA	2 cut(s)	450, 713
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	191, 642
BanII	GRGCYC	1 cut(s)	840
Bbv12I	GWGCWC	3 cut(s)	189, 332, 840
BbvI	GCAGC	5 cut(s)	302, 487, 509, 670, 902
BccI	CCATC	2 cut(s)	160, 257
BceAI	ACGGC	2 cut(s)	226, 488
BcoDI	GTCTC	2 cut(s)	234, 530
BfmI	CTRYAG	2 cut(s)	270, 516
BfoI	RGCGCY	1 cut(s)	362
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	214, 291, 498, 501, 684, 916
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	6 cut(s)	215, 292, 499, 502, 685, 917
Bme18I	GGWCC	2 cut(s)	191, 642
BmgT120I	GGNCC	3 cut(s)	73, 191, 642
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	457, 670, 740
BmuI	ACTGGG	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	397, 904
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	738, 811
BsaWI	WCCGGW	2 cut(s)	78, 193
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 131, 161
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	226
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	738, 811
BseGI	GGATG	2 cut(s)	268, 734
BseMII	CTCAG	3 cut(s)	174, 317, 825
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	2 cut(s)	26, 82
BseXI	GCAGC	5 cut(s)	302, 487, 509, 670, 902
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	74, 216
BshTI	ACCGGT	1 cut(s)	193
BsiHKAI	GWGCWC	3 cut(s)	189, 332, 840
BsiSI	CCGG	2 cut(s)	79, 194
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	234, 530
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	74, 216
Bso31I	GGTCTC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	189, 332, 840
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	142, 213, 645
BspANI	GGCC	2 cut(s)	74, 216
BspCNI	CTCAG	3 cut(s)	175, 318, 826
BspEI	TCCGGA	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	4 cut(s)	274, 371, 608, 616
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	738, 811
BssMI	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
BssT1I	CCWWGG	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	19, 336, 742
Bst6I	CTCTTC	2 cut(s)	56, 68
BstAFI	CTTAAG	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	183, 326, 834
BstDSI	CCRYGG	1 cut(s)	738
BstEII	GGTNACC	2 cut(s)	598, 719
BstF5I	GGATG	2 cut(s)	268, 734
BstFNI	CGCG	1 cut(s)	647
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	2 cut(s)	361, 649
BstKTI	GATC	6 cut(s)	163, 269, 379, 399, 611, 616
BstMAI	GTCTC	2 cut(s)	234, 530
BstMBI	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	659
BstPI	GGTNACC	2 cut(s)	598, 719
BstSFI	CTRYAG	2 cut(s)	270, 516
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	302, 487, 509, 670, 902
BstX2I	RGATCY	2 cut(s)	266, 613
BstYI	RGATCY	2 cut(s)	266, 613
BsuRI	GGCC	2 cut(s)	74, 216
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	268, 734
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	593
CaiI	CAGNNNCTG	2 cut(s)	232, 617
CfoI	GCGC	2 cut(s)	361, 649
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	73, 191, 642
CpoI	CGGWCCG	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	157, 281
CspAI	ACCGGT	1 cut(s)	193
CspI	CGGWCCG	1 cut(s)	191
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	2 cut(s)	157, 281
DdeI	CTNAG	3 cut(s)	183, 326, 834
DpnI	GATC	6 cut(s)	162, 268, 378, 398, 610, 615
DpnII	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
DrdI	GACNNNNNNGTC	2 cut(s)	226, 557
DseDI	GACNNNNNNGTC	2 cut(s)	226, 557
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	56, 68
EarI	CTCTTC	2 cut(s)	56, 68
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	191, 642
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	513, 741
Eco91I	GGTNACC	2 cut(s)	598, 719
EcoICRI	GAGCTC	1 cut(s)	838
EcoO65I	GGTNACC	2 cut(s)	598, 719
EcoT14I	CCWWGG	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	1 cut(s)	659
FaiI	YATR	8 cut(s)	371, 421, 434, 453, 657, 678, 696, 846
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	655
Fnu4HI	GCNGC	6 cut(s)	214, 291, 498, 501, 684, 916
FokI	GGATG	2 cut(s)	275, 721
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	6 cut(s)	214, 291, 498, 501, 684, 916
GlaI	GCGC	2 cut(s)	360, 648
GluI	GCNGC	6 cut(s)	214, 291, 498, 501, 684, 916
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	74, 216
HapII	CCGG	2 cut(s)	79, 194
HhaI	GCGC	2 cut(s)	361, 649
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	2 cut(s)	359, 647
HinP1I	GCGC	2 cut(s)	359, 647
HinfI	GANTC	2 cut(s)	89, 119
HpaII	CCGG	2 cut(s)	79, 194
HphI	GGTGA	2 cut(s)	450, 713
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188III	TCNNGA	6 cut(s)	79, 173, 476, 606, 629, 921
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	2 cut(s)	349, 886
HpyCH4III	ACNGT	3 cut(s)	19, 336, 742
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	3 cut(s)	518, 659, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	183, 326, 834
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	2 cut(s)	359, 647
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	14, 39, 139
Lsp1109I	GCAGC	5 cut(s)	302, 487, 509, 670, 902
LweI	GCATC	3 cut(s)	457, 670, 740
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	3 cut(s)	598, 619, 719
MalI	GATC	6 cut(s)	162, 268, 378, 398, 610, 615
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
MboII	GAAGA	5 cut(s)	43, 55, 683, 766, 897
MflI	RGATCY	2 cut(s)	266, 613
MhlI	GDGCHC	3 cut(s)	189, 332, 840
MluCI	AATT	6 cut(s)	4, 100, 126, 540, 635, 854
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	3 cut(s)	285, 563, 789
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	2 cut(s)	79, 194
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	719
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	119
PinAI	ACCGGT	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	215, 292, 499, 502, 685, 917
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	840
PspEI	GGTNACC	2 cut(s)	598, 719
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	3 cut(s)	73, 191, 642
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	232, 617
PsuI	RGATCY	2 cut(s)	266, 613
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	158, 282
RsaNI	GTAC	2 cut(s)	157, 281
Rsr2I	CGGWCCG	1 cut(s)	191
RsrII	CGGWCCG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	285, 563, 789
SatI	GCNGC	6 cut(s)	214, 291, 498, 501, 684, 916
Sau3AI	GATC	6 cut(s)	160, 266, 376, 396, 608, 613
Sau96I	GGNCC	3 cut(s)	73, 191, 642
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	189, 332, 840
SfaNI	GCATC	3 cut(s)	457, 670, 740
SfcI	CTRYAG	2 cut(s)	270, 516
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	191, 642
SmlI	CTYRAG	3 cut(s)	284, 412, 919
SmoI	CTYRAG	3 cut(s)	284, 412, 919
Sse9I	AATT	6 cut(s)	4, 100, 126, 540, 635, 854
SsiI	CCGC	3 cut(s)	142, 213, 645
SstI	GAGCTC	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	3 cut(s)	19, 336, 742
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	4 cut(s)	131, 375, 628, 849
TasI	AATT	6 cut(s)	4, 100, 126, 540, 635, 854
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	285, 563, 789
Tru9I	TTAA	3 cut(s)	285, 563, 789
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	5 cut(s)	290, 497, 500, 683, 915
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	8 cut(s)	16, 17, 405, 428, 683, 690, 819, 905
TspGWI	ACGGA	2 cut(s)	204, 897
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	191, 642
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.