Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004056.1

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Forward (+)

866 .. 2711

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004056.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgcatcactccaaaacggtagctctgctctggctcacctccgccttgctcttcttctctctcttccaaatggcccgccgggactccgacacgacaccctccggcacgggttctgtgattccgatcagggatcggaggtcggcattgtacgagaagatggcaggggatttggacgagaaaggtccgctgtttctgaatcacggccacacctcccagtccctgtcgctctccgacatttttacggtgaaggatgatggatccgtggcacctgtgctcaaggcagcaaatcctcccgttcgtgcgaatgtgttgtatctgagcacacagtactcggttcgaatctcggaggtgctcaaaccgattcttgatccgtactttgataaattcatctggtttcagaactcaagtttgtatcattttagtatgttccacgcctcgcatcatatttcacctgttcctgcgacccaagatgagattgaagctgaagcagccgctgttagagctgttgtagaaggcctgtgccctttaaagattgtcttggacagagtggttttaacctcaacaggtgtgcttcttggatgctggcaggtaatgtctggatcagatcctatgactgtccgagcaaaactaaggaccgcacttccacgtgcccctgagaagcaacttgtgagaaccatatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.1

Weight (kDa)

8.55

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	5 cut(s)	42, 76, 185, 492, 636
AclWI	GGATC	6 cut(s)	138, 252, 265, 362, 599, 607
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	504
AcvI	CACGTG	1 cut(s)	647
AfaI	GTAC	3 cut(s)	149, 329, 374
AgsI	TTSAA	1 cut(s)	479
AluBI	AGCT	3 cut(s)	23, 482, 503
AluI	AGCT	3 cut(s)	23, 482, 503
Alw21I	GWGCWC	3 cut(s)	276, 323, 354
AlwI	GGATC	6 cut(s)	138, 252, 265, 362, 599, 607
AlwNI	CAGNNNCTG	2 cut(s)	220, 494
AoxI	GGCC	3 cut(s)	72, 202, 514
ApeKI	GCWGC	2 cut(s)	281, 488
ApoI	RAATTY	1 cut(s)	383
AspS9I	GGNCC	3 cut(s)	73, 182, 633
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	28, 256, 441
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	182, 633
BaeGI	GKGCMC	2 cut(s)	524, 652
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	647
Bbv12I	GWGCWC	3 cut(s)	276, 323, 354
BbvI	GCAGC	2 cut(s)	293, 500
BccI	CCATC	2 cut(s)	151, 248
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	282, 489, 492
BlsI	GCNGC	3 cut(s)	283, 490, 493
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	2 cut(s)	182, 633
BmgT120I	GGNCC	3 cut(s)	73, 182, 633
BmiI	GGNNCC	2 cut(s)	259, 267
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	13, 448, 569
BmuI	ACTGGG	1 cut(s)	208
Bpu14I	TTCGAA	1 cut(s)	337
BpuEI	CTTGAG	2 cut(s)	260, 388
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	256, 584
BseJI	GATNNNNATC	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	308, 645
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	2 cut(s)	524, 652
BseXI	GCAGC	2 cut(s)	293, 500
BshFI	GGCC	3 cut(s)	74, 204, 516
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	276, 323, 354
BsiSI	CCGG	2 cut(s)	79, 102
BslFI	GGGAC	2 cut(s)	95, 202
BsmFI	GGGAC	2 cut(s)	95, 202
BsnI	GGCC	3 cut(s)	74, 204, 516
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	5 cut(s)	276, 323, 354, 524, 652
Bsp143I	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
BspACI	CCGC	5 cut(s)	42, 76, 185, 492, 636
BspANI	GGCC	3 cut(s)	74, 204, 516
BspCNI	CTCAG	2 cut(s)	309, 646
BspLI	GGNNCC	2 cut(s)	259, 267
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	6 cut(s)	138, 252, 265, 362, 599, 607
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
Bst4CI	ACNGT	4 cut(s)	19, 244, 327, 616
Bst6I	CTCTTC	2 cut(s)	56, 68
BstBAI	YACGTR	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	76, 584
BstDEI	CTNAG	3 cut(s)	317, 629, 654
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	256, 584
BstKTI	GATC	6 cut(s)	126, 133, 260, 370, 602, 607
BstMBI	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 500
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	2 cut(s)	524, 652
BstV1I	GCAGC	2 cut(s)	293, 500
BstX2I	RGATCY	2 cut(s)	257, 604
BstYI	RGATCY	2 cut(s)	257, 604
BsuRI	GGCC	3 cut(s)	74, 204, 516
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	256, 584
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	76, 584
CaiI	CAGNNNCTG	2 cut(s)	220, 494
Cfr13I	GGNCC	3 cut(s)	73, 182, 633
Csp6I	GTAC	3 cut(s)	148, 328, 373
CviJI	RGCY	8 cut(s)	23, 34, 74, 204, 482, 491, 503, 516
CviKI_1	RGCY	8 cut(s)	23, 34, 74, 204, 482, 491, 503, 516
CviQI	GTAC	3 cut(s)	148, 328, 373
DdeI	CTNAG	3 cut(s)	317, 629, 654
DpnI	GATC	6 cut(s)	125, 132, 259, 369, 601, 606
DpnII	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
DraI	TTTAAA	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	56, 68
EarI	CTCTTC	2 cut(s)	56, 68
EciI	GGCGGA	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	182, 633
Eco57I	CTGAAG	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	5 cut(s)	425, 444, 611, 677, 682
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	2 cut(s)	95, 202
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	282, 489, 492
FokI	GGATG	2 cut(s)	263, 591
Fsp4HI	GCNGC	3 cut(s)	282, 489, 492
GluI	GCNGC	3 cut(s)	282, 489, 492
HaeIII	GGCC	3 cut(s)	74, 204, 516
HapII	CCGG	2 cut(s)	79, 102
HinfI	GANTC	5 cut(s)	83, 118, 196, 339, 361
HpaII	CCGG	2 cut(s)	79, 102
HphI	GGTGA	3 cut(s)	28, 256, 441
Hpy188III	TCNNGA	2 cut(s)	365, 597
HpyAV	CCTTC	2 cut(s)	241, 506
HpyCH4III	ACNGT	4 cut(s)	19, 244, 327, 616
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 500
HpyF3I	CTNAG	3 cut(s)	317, 629, 654
HpySE526I	ACGT	1 cut(s)	646
Kzo9I	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
LguI	GCTCTTC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	293, 500
LweI	GCATC	3 cut(s)	13, 448, 569
MaeII	ACGT	1 cut(s)	646
MalI	GATC	6 cut(s)	125, 132, 259, 369, 601, 606
MboI	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
MboII	GAAGA	4 cut(s)	43, 46, 55, 166
MflI	RGATCY	2 cut(s)	257, 604
MhlI	GDGCHC	5 cut(s)	276, 323, 354, 524, 652
MluCI	AATT	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 255
MnlI	CCTC	8 cut(s)	49, 109, 129, 220, 300, 340, 445, 568
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	527, 554
MspA1I	CMGCKG	2 cut(s)	187, 494
MspI	CCGG	2 cut(s)	79, 102
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	488, 500
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
NlaIV	GGNNCC	2 cut(s)	259, 267
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	118, 196, 339, 361
PkrI	GCNGC	3 cut(s)	283, 490, 493
PleI	GAGTC	1 cut(s)	77
PmaCI	CACGTG	1 cut(s)	647
PmlI	CACGTG	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	647
PspCI	CACGTG	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	259, 267
PspPI	GGNCC	3 cut(s)	73, 182, 633
PstNI	CAGNNNCTG	2 cut(s)	220, 494
PsuI	RGATCY	2 cut(s)	257, 604
RsaI	GTAC	3 cut(s)	149, 329, 374
RsaNI	GTAC	3 cut(s)	148, 328, 373
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	527, 554
SatI	GCNGC	3 cut(s)	282, 489, 492
Sau3AI	GATC	6 cut(s)	123, 130, 257, 367, 599, 604
Sau96I	GGNCC	3 cut(s)	73, 182, 633
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	5 cut(s)	276, 323, 354, 524, 652
SfaNI	GCATC	3 cut(s)	13, 448, 569
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	2 cut(s)	182, 633
SmlI	CTYRAG	2 cut(s)	275, 403
SmoI	CTYRAG	2 cut(s)	275, 403
Sse9I	AATT	1 cut(s)	383
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	5 cut(s)	42, 76, 185, 492, 636
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	4 cut(s)	19, 244, 327, 616
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	1 cut(s)	337
TasI	AATT	1 cut(s)	383
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	4 cut(s)	118, 196, 339, 361
Tru1I	TTAA	2 cut(s)	527, 554
Tru9I	TTAA	2 cut(s)	527, 554
TseI	GCWGC	2 cut(s)	281, 488
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	2 cut(s)	250, 360
VpaK11BI	GGWCC	2 cut(s)	182, 633
XapI	RAATTY	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.