Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Reverse (-)

2502883 .. 2505275

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG039100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCATCACTCGAAAACGGTAGCTCTGCTCTGGCTCACCTCCGCCTTGCTCTTCTTATTCTCTCTCTTCCAAATGGCCCGCCGGGACTCCGATACGACACGCAATGATTACCCCTCCGGCACCGATTCTGTGATTCCGATCAGGGATCGGAGGTCGGCATTGTACGAGAAGATGGTTAGGGATTTGGACGAGAAAGGTCCGCTGTTCCTGAAACACGGCCACACCTCTCAGTCTCTGTCGCTCTCCGACCTTTTTACGGTGAAGGATGATGGATCCGTGGCACCTGTGCTCAAGGCAGCAAATCCTCCCGTTCGTGCTAATGTCTTGTATCTGAGCACACAGTACTCGGTTCGAATCTCGGAGGTGCTCAAACCTATTCTTGATCCGTACTTTGATAAATTGATCTGGTTTCAGAACTCAAGTTTGTATCATTTTAGTATGTTCCACGCCTCGCATCATATTTCACCTGTTCCTGCGACCCAAGATGAGATTGAAGCTGAAGCAGCTGCTGTTAGAGCTGTTGTAGAAGACCTGTGCCCTTTAAAGATTGTCTTGGACAGAGTGGTTTTAACTTCAACAGGTAATGTCTGGATCAGATCCTATGACTGTCCGAGCAAAACTAAGGACCGCACTTCCACGTGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.24

Weight (kDa)

7.09

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 280
AciI	CCGC	4 cut(s)	42, 79, 200, 628
AclWI	GGATC	6 cut(s)	153, 267, 280, 377, 591, 599
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	639
AfaI	GTAC	3 cut(s)	164, 344, 389
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	494, 576
AluBI	AGCT	4 cut(s)	23, 497, 506, 518
AluI	AGCT	4 cut(s)	23, 497, 506, 518
Alw21I	GWGCWC	3 cut(s)	291, 338, 369
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	6 cut(s)	153, 267, 280, 377, 591, 599
AlwNI	CAGNNNCTG	2 cut(s)	235, 509
AoxI	GGCC	2 cut(s)	75, 217
ApeKI	GCWGC	3 cut(s)	296, 503, 506
AspS9I	GGNCC	3 cut(s)	76, 197, 625
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	28, 271, 456
AsuII	TTCGAA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	197, 625
BaeGI	GKGCMC	2 cut(s)	539, 644
BamHI	GGATCC	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	119, 280
BbrPI	CACGTG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	3 cut(s)	291, 338, 369
BbvI	GCAGC	3 cut(s)	308, 493, 515
BccI	CCATC	2 cut(s)	166, 263
BceAI	ACGGC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	237
BisI	GCNGC	3 cut(s)	297, 504, 507
BlsI	GCNGC	3 cut(s)	298, 505, 508
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	197, 625
BmgT120I	GGNCC	3 cut(s)	76, 197, 625
BmiI	GGNNCC	3 cut(s)	121, 274, 282
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	13, 463
BpiI	GAAGAC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	352
BpuEI	CTTGAG	2 cut(s)	275, 403
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	242, 323
BseSI	GKGCMC	2 cut(s)	539, 644
BseXI	GCAGC	3 cut(s)	308, 493, 515
BshFI	GGCC	2 cut(s)	77, 219
BshNI	GGYRCC	2 cut(s)	119, 280
BsiHKAI	GWGCWC	3 cut(s)	291, 338, 369
BsiSI	CCGG	2 cut(s)	82, 117
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	77, 219
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	5 cut(s)	291, 338, 369, 539, 644
Bsp143I	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
BspACI	CCGC	4 cut(s)	42, 79, 200, 628
BspANI	GGCC	2 cut(s)	77, 219
BspCNI	CTCAG	2 cut(s)	241, 324
BspLI	GGNNCC	3 cut(s)	121, 274, 282
BspPI	GGATC	6 cut(s)	153, 267, 280, 377, 591, 599
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	352
BspT107I	GGYRCC	2 cut(s)	119, 280
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
Bst4CI	ACNGT	4 cut(s)	19, 259, 342, 608
Bst6I	CTCTTC	2 cut(s)	56, 71
BstBAI	YACGTR	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	228, 332, 621
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	7 cut(s)	141, 148, 275, 385, 405, 594, 599
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 515
BstSCI	CCNGG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	539, 644
BstV1I	GCAGC	3 cut(s)	308, 493, 515
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	272, 596
BstYI	RGATCY	2 cut(s)	272, 596
BsuRI	GGCC	2 cut(s)	77, 219
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	2 cut(s)	235, 509
Cfr13I	GGNCC	3 cut(s)	76, 197, 625
Csp6I	GTAC	3 cut(s)	163, 343, 388
CviJI	RGCY	7 cut(s)	23, 34, 77, 219, 497, 506, 518
CviKI_1	RGCY	7 cut(s)	23, 34, 77, 219, 497, 506, 518
CviQI	GTAC	3 cut(s)	163, 343, 388
DdeI	CTNAG	3 cut(s)	228, 332, 621
DpnI	GATC	7 cut(s)	140, 147, 274, 384, 404, 593, 598
DpnII	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
DraI	TTTAAA	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	56, 71
EarI	CTCTTC	2 cut(s)	56, 71
EciI	GGCGGA	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	197, 625
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	440, 459, 603
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	98
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	297, 504, 507
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	297, 504, 507
GluI	GCNGC	3 cut(s)	297, 504, 507
HaeIII	GGCC	2 cut(s)	77, 219
HapII	CCGG	2 cut(s)	82, 117
HinfI	GANTC	4 cut(s)	86, 125, 133, 354
HpaII	CCGG	2 cut(s)	82, 117
HphI	GGTGA	3 cut(s)	28, 271, 456
Hpy188I	TCNGA	9 cut(s)	91, 138, 150, 247, 333, 361, 414, 596, 612
Hpy188III	TCNNGA	3 cut(s)	208, 380, 589
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	4 cut(s)	19, 259, 342, 608
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 515
HpyF3I	CTNAG	3 cut(s)	228, 332, 621
HpySE526I	ACGT	1 cut(s)	638
Kzo9I	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
LguI	GCTCTTC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	308, 493, 515
LweI	GCATC	2 cut(s)	13, 463
MaeII	ACGT	1 cut(s)	638
MalI	GATC	7 cut(s)	140, 147, 274, 384, 404, 593, 598
MboI	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
MboII	GAAGA	4 cut(s)	43, 58, 181, 539
MflI	RGATCY	2 cut(s)	272, 596
MhlI	GDGCHC	5 cut(s)	291, 338, 369, 539, 644
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	49, 124, 144, 235, 315, 355, 460
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	542, 569
MspA1I	CMGCKG	2 cut(s)	202, 506
MspI	CCGG	2 cut(s)	82, 117
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	503, 515
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
NlaIV	GGNNCC	3 cut(s)	121, 274, 282
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	125, 133, 354
PkrI	GCNGC	3 cut(s)	298, 505, 508
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	639
PmlI	CACGTG	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	639
PspCI	CACGTG	1 cut(s)	639
PspN4I	GGNNCC	3 cut(s)	121, 274, 282
PspPI	GGNCC	3 cut(s)	76, 197, 625
PstNI	CAGNNNCTG	2 cut(s)	235, 509
PsuI	RGATCY	2 cut(s)	272, 596
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	3 cut(s)	164, 344, 389
RsaNI	GTAC	3 cut(s)	163, 343, 388
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	542, 569
SatI	GCNGC	3 cut(s)	297, 504, 507
Sau3AI	GATC	7 cut(s)	138, 145, 272, 382, 402, 591, 596
Sau96I	GGNCC	3 cut(s)	76, 197, 625
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	5 cut(s)	291, 338, 369, 539, 644
SfaNI	GCATC	2 cut(s)	13, 463
SfuI	TTCGAA	1 cut(s)	352
SinI	GGWCC	2 cut(s)	197, 625
SmlI	CTYRAG	2 cut(s)	290, 418
SmoI	CTYRAG	2 cut(s)	290, 418
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	4 cut(s)	42, 79, 200, 628
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	4 cut(s)	19, 259, 342, 608
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	2 cut(s)	11, 352
TasI	AATT	1 cut(s)	398
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	125, 133, 354
Tru1I	TTAA	2 cut(s)	542, 569
Tru9I	TTAA	2 cut(s)	542, 569
TseI	GCWGC	3 cut(s)	296, 503, 506
TspGWI	ACGGA	2 cut(s)	265, 375
VpaK11BI	GGWCC	2 cut(s)	197, 625
ZrmI	AGTACT	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.