Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006892

Physical Location & Seq

Genomic Coordinates Forward (+)

10039436 .. 10048278

Gene Structure 8843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17560.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3906 bp

ATGGTCTTCAAGGGCAGGTTCTTCTCCTCCAAGAAATCCGACTCCTCCAACAGTCCAGATGGCTCCAACAACAGCCCCAGATCGCTCGGCTCCAACTCCCCCAGCAGATCCGATAAGAAGAAATCCAAATCCGCCGACTCCAAATCCATCTCCGCCGCCGCCTTCGGTGGCTCCAGCCGCCAAACGCTAGACAAGACAAAGAAGAAGGACGCCAAGGGGAAAGACATTCAGCAACAAGCTCAGCCGAAAACGCCGATCAAGTCCGGCTTAGCTGGTTTAAGCTCGACGACGACTCCGAAGAAGTCGTCGTCGTCGGCGTCGCCTGCGACGGAGCCGGCGTCGGTGTCTCCCATTCTGGCGTCGTCGCTCGGGTTGAACAGGATAAAGACGAGATCGGGGCCGCTGCCACAGGAGAGCTTCTTCGGGTTTAGGGGAGACAAAGGCTCGGCGTTGGGGTCTAGTAATTTGTCCAGGCCGGTCGCCGGTGATGGGAGCTCGGGGTTGAAGAAGAAGGAGGCGGCCGCGGCGGCCAGTGTGAGCAGGACGGGGTTTAATGAGAGTGTGGCGAGTGGGAGCTGGGTTGATAATGGAAGTAATTCGGATAGTATGTCAACTAGCAGTGTGCCTTCCAGAGACCAAAGCCCGAGCATGCCTGCACCGCCGTCGCGGTTGCAGAATAGTGGCGAATCCTTGGCTGAAGCTGCGCGAAAGATATCATCTCGAGGTCGCTCTGGAGTTTTGAGAAGTTCAGAGGTTTGCACACCAGAGCCTGCATATGATTGTGAGAATCCTAAGGAGTCTGAATCTCCCCGTTTTCAAGCTATACTGCGTTTAACGAGTGCACCAAGAAAGAGGCATCCTGCTGATATAAAAAGTTTTTCCCATGAACTAAATTCCAAAGGTGTACGTCCTTTCCCATTTTGGAAGCCTCGAGGCTTAAACAACGTGGAGGAAATATTAGTTGTGATTCGGGCTAAATTTGATAAAGCAAAAGAAGAAGTGAACTCTGATCTAGCTGTATTTGCAGCAGATTTGGTTGGTGTTCTTGAAAAAAATGCAGATACTCATCCAGACTGGCAGGAAACCATTGAGGACTTGCTGGTTTTAGCTCGAAGTTGTGCGATGACATCATCAGGAGACTTTTGGTTTCAGTGTGAAAGCATAGTTCAGGAATTGGATGATAGGCGTCAAGAACTTCCTCCGGGTACACTTAAGCAGCTTCACACCAGAATGCTTTTCATACTCACTAGGTGTACCAGATTGTTGCAGTTCCATAAGGAAACTGGATTGGCTGAGGATGTACCGGTTTTCCAGCTTCGTCAATCAAGAGTTCTGAATTCTGTAGATAAAAGACTTAATTCTGTGGATAAAAGAATTCCTCCAAGTGCGGTAAAGGATACAAAAAGTTCTAGTGTTACACAGACATCTAAAGCAGCTTCAGCTAGGAAATTTTATAGTCAGGAGCAGCATAGCTTGGATTGGAAGAGAGATCATGTGGTTACACAACCTGCAATTTTGACCCCTCCTCCTGCCGAACTCCCCTCGAAGATTTTAGATTCTCCTGCTAGTAGGGATCGAATTACCTCATGGAAGAAATTCCCATCTCCAGTTGGGAAAAGCACGAAAGAAGTATCTAAAGTAAAGGATCAGAAGGATGTTAAGGTTGAGAAGTTGAAGGCTTCAGACCACAAGAGAGGGACTTCTGATATTGATCAGACTACAGTGAAACCCTCTGAGCCTTCTGCCAAGGATTCTCATGAACCCAAGCACGGACACAAAGCTTCTTGGGGTTGGGGATATCCTCCTAGTGGATCTGATGACACTTCTATAATTTGTCGCATTTGTGAGGACGAGGTTCCAACTTCAAATGTGGAAGACCATTCGAGAATTTGTGCAATTGCTGATCGATGTGATCAGAAGGGTCTAAGTGTCAATGAGCGTCTCGTCAGAATCTCCGAAACCCTTGAAAAGATGATGGAGTCCTTCACTCAAAAGGATATCCAGCATGGTATAGGAAGTCCAGATGTTGCAAAAGTATCAAATTCGAGTGTGACTGAAGAATCTGACGGTCTCTCTCCAAAACTCAGTGATTGGTCCCATAGAGGCTCTGAGGAAATGCTTGATTGTTTTCCTGAAGCTGATAACTCATCTTTCATGGAAGACCTGAAGGGTTTGCCTTCCATGTCATGTAGAACTCGTTTTGGGCCCAAGTCTGATCAGGGAATGACAACATCATCTGCAGGTAGCATGACACCAAGGTCTCCGTTATTGACACCAAAAGCCAGTCAGATTGACTTGCTACTGGCAGGCAAGGCTTCTTTCTCTGAGCAAGATGATCTTCCTCAGATGAATGAACTTTCTGATATTGCTCGTTGCGTGGCAAATACACCTCTGGAGGATGACCGTTCCAATCCATATTTACTGTCTTGTCTTGAAGACTTGAGAGTTGTTATTGAGCGCAGAAAGTTTGATGCACTCACGGTGGAAACTTTTGGGGCACGCATTGAGAAGCTGATCCGGGAGAAGTACTTACAGCTTTGCGAATTAGTTGAAGATGAAAAGGTTGATATATCAAGTACAGTAATTGATGAAGATGCTCCTCTTGATGATGATGTGGTTCGTACAAGCCCTATACATTTTTCGAAGGACCGGACATCTATAGATGACTTTGAAATTATCAAACCCATAAGCCGTGGGGCATTTGGACGAGTTTTCCTAGCTAAAAAGAGAACAACAGGTGATCTTTTTGCAATTAAGGTTCTTAAAAAGGCAGATATGATCCGTAAAAATGCTGTTGAAAGTATATTAGCAGAACGAGACATCTTGATATCAGTCCGCAATCCTTTTGTGGTTCGGTTCTTTTATTCTTTTACTTGCCGTGAAAACTTGTATCTTGTGATGGAGTATCTAAATGGAGGAGATTTGTACTCATTGTTGAGAAATTTAGGCTGCTTAGATGAGGATGTTGCTCGTGTATATATAGCTGAAGTGGTGCTTGCATTAGAATATTTACATTCACTTTGTGTGGTTCATCGTGATTTGAAGCCTGACAATTTGTTAATTGCTCACGATGGCCATATTAAGTTGACAGACTTCGGGCTTTCAAAGGTTGGTCTCATCAACAGCACTGATGATTTATCTGGTCCAGCGGTTAGCGAGACATCCCTACTTGGGGAGGATGAATCCGAACAATCTATGTCTGAGCATCAGCGAGAAAGGCGAAAGAAACGGTCAGCTGTGGGTACACCAGACTATTTGGCGCCAGAGATACTGTTAGGAACAGGACATGCTGCAACTGCAGATTGGTGGTCTGTTGGGGTCATTTTGTTTGAATTGATTGTTGGCATTCCACCCTTCAATGCAGAACATCCTCAGACAATTTTTGATAATATACTCAACCGAAATATACCTTGGCCTCGGGTACCTGAAGAATTGAGTCCTGAAGCAGCAGATCTTATTGATCAGTTATTGACAGAAGATCCTAATCAGAGACTTGGAGCCAGAGGAGCGTCAGAGGTAAAGCAGCATCCATTCTTTAAGGATATCAACTGGGATACCCTTGCCAGGCAGAAGGCTGCGTTTGTTCCATCTTCAGATAGTGCAATGGACACCAGTTACTTCACCAGCCGTTACTCATGGAATCCTTCAGATGAGCATGTTTATCCAGCTAGCGATCTGGACGATTCCAGTGATGCTGATAGCTTAAGTGGCAGCAGTGGTTTGAGCAACCGTCATGATGAAGTGGTTGATGAGTGTGGAGGCCTTGCTGAGTTTGAGTCTGGCTCGTCTATCAATTACTCTTTCAGTAATTTTTCATTTAAGAATCTCTCGCAGCTTGCATCAATCAACTATGATCTGCTTTCCAAGGGTTTTAAGGATGATCCATCTTCGAATCGCAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

1302

Amino Acids

143.01

Weight (kDa)

5.93

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IREH1	PF26031	308 - 426	2.3e-55	IREH1-like domain
Pkinase	PF00069	890 - 1179	1.7e-65	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	891 - 1037	2.7e-24	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	1069 - 1165	9.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17850
fragaria_vesca	FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560
malus_domestica	MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1
prunus_persica	Prupe.5G235400_v2.0.a1
pyrus_communis	pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940
rosa_chinensis	RchiOBHm_Chr7g0178091
rosa_laevigata	RLG00000005472
rosa_multiflora	Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275190
rosa_rugosa	Rorug06G0413400 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900
rosa_wichuraiana	Rw7G001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2257
AbsI	CCTCGAGG	1 cut(s)	930
Acc36I	ACCTGC	3 cut(s)	6, 1516, 2231
Acc65I	GGTACC	1 cut(s)	3421
AccB1I	GGYRCC	2 cut(s)	3259, 3421
AccII	CGCG	3 cut(s)	524, 667, 706
AclWI	GGATC	8 cut(s)	102, 1581, 1653, 1819, 2509, 2773, 3473, 3875
AcoI	YGGCCR	3 cut(s)	519, 528, 3073
AcsI	RAATTY	9 cut(s)	892, 977, 1336, 1374, 1448, 1595, 1887, 2041, 2941
AcyI	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
AdeI	CACNNNGTG	2 cut(s)	1251, 3023
AfiI	CCNNNNNNNGG	7 cut(s)	482, 489, 1769, 1808, 3171, 3172, 3564
AflII	CTTAAG	2 cut(s)	1211, 3703
AgeI	ACCGGT	1 cut(s)	1303
AjnI	CCWGG	2 cut(s)	470, 3563
AjuI	GAANNNNNNNTTGG	4 cut(s)	3324, 3356, 3394, 3426
Alw21I	GWGCWC	2 cut(s)	497, 844
Alw44I	GTGCAC	1 cut(s)	840
AlwI	GGATC	8 cut(s)	102, 1581, 1653, 1819, 2509, 2773, 3473, 3875
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
AoxI	GGCC	8 cut(s)	398, 473, 519, 528, 2204, 3073, 3413, 3760
ApaI	GGGCCC	1 cut(s)	2208
ApaLI	GTGCAC	1 cut(s)	840
ApoI	RAATTY	9 cut(s)	892, 977, 1336, 1374, 1448, 1595, 1887, 2041, 2941
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsiGI	ACCGGT	1 cut(s)	1303
Asp700I	GAANNNNTTC	2 cut(s)	595, 1595
Asp718I	GGTACC	1 cut(s)	3421
AspLEI	GCGC	3 cut(s)	706, 2460, 3262
AspS9I	GGNCC	6 cut(s)	398, 2094, 2204, 2205, 2647, 3143
AsuC2I	CCSGG	2 cut(s)	1203, 2519
AsuHPI	GGTGA	3 cut(s)	497, 2750, 3613
AsuII	TTCGAA	2 cut(s)	2642, 3890
AsuNHI	GCTAGC	1 cut(s)	3668
AvaI	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
AvaII	GGWCC	3 cut(s)	2094, 2647, 3143
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	3 cut(s)	844, 2208, 2500
BalI	TGGCCA	1 cut(s)	3075
BanI	GGYRCC	2 cut(s)	3259, 3421
BanII	GRGCYC	2 cut(s)	497, 2208
BauI	CACGAG	1 cut(s)	2970
BbsI	GAAGAC	3 cut(s)	1881, 2166, 2442
Bbv12I	GWGCWC	2 cut(s)	497, 844
BbvCI	CCTCAGC	1 cut(s)	1293
BccI	CCATC	9 cut(s)	53, 155, 482, 1609, 1969, 2893, 3065, 3595, 3892
BceAI	ACGGC	4 cut(s)	646, 2676, 2862, 3612
BcgI	CGANNNNNNTGC	2 cut(s)	645, 679
BciT130I	CCWGG	2 cut(s)	472, 3565
BciVI	GTATCC	2 cut(s)	1390, 3547
BclI	TGATCA	4 cut(s)	1711, 1912, 2215, 3460
BcnI	CCSGG	2 cut(s)	1203, 2519
BfmI	CTRYAG	5 cut(s)	1341, 1719, 2238, 2658, 3297
BfoI	RGCGCY	1 cut(s)	3263
BfrI	CTTAAG	2 cut(s)	1211, 3703
BfuAI	ACCTGC	3 cut(s)	6, 1516, 2231
BfuI	GTATCC	2 cut(s)	1390, 3547
BglI	GCCNNNNNGGC	1 cut(s)	527
BglII	AGATCT	1 cut(s)	3451
BlpI	GCTNAGC	2 cut(s)	240, 268
BmcAI	AGTACT	1 cut(s)	2528
Bme1390I	CCNGG	4 cut(s)	472, 1203, 2519, 3565
Bme18I	GGWCC	3 cut(s)	2094, 2647, 3143
BmeT110I	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
BmgT120I	GGNCC	6 cut(s)	398, 2094, 2204, 2205, 2647, 3143
BmrFI	CCNGG	4 cut(s)	472, 1203, 2519, 3565
BmrI	ACTGGG	1 cut(s)	3559
BmsI	GCATC	7 cut(s)	865, 2461, 2584, 3214, 3535, 3682, 3848
BmtI	GCTAGC	1 cut(s)	3672
BmuI	ACTGGG	1 cut(s)	3559
BpiI	GAAGAC	3 cut(s)	1881, 2166, 2442
BplI	GAGNNNNNCTC	2 cut(s)	3767, 3799
BpmI	CTGGAG	4 cut(s)	157, 753, 1590, 2414
Bpu10I	CCTNAGC	1 cut(s)	1293
Bpu1102I	GCTNAGC	2 cut(s)	240, 268
Bpu14I	TTCGAA	2 cut(s)	2642, 3890
BpuEI	CTTGAG	1 cut(s)	2461
BpuMI	CCSGG	2 cut(s)	1203, 2519
Bsa29I	ATCGAT	1 cut(s)	1906
BsaBI	GATNNNNATC	3 cut(s)	1065, 1710, 3483
BsaHI	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
BsaI	GGTCTC	4 cut(s)	627, 2075, 2265, 3119
BsaJI	CCNNGG	9 cut(s)	213, 522, 690, 1746, 2255, 2692, 3410, 3416, 3864
BsaWI	WCCGGW	2 cut(s)	1303, 2649
BsaXI	ACNNNNNCTCC	6 cut(s)	277, 307, 323, 353, 1510, 1540
Bsc4I	CCNNNNNNNGG	7 cut(s)	482, 489, 1769, 1808, 3171, 3172, 3564
Bse118I	RCCGGY	4 cut(s)	334, 475, 482, 1303
Bse1I	ACTGG	9 cut(s)	531, 1079, 1288, 1607, 2283, 2307, 3554, 3612, 3687
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	3609
Bse8I	GATNNNNATC	3 cut(s)	1065, 1710, 3483
BseBI	CCWGG	2 cut(s)	472, 3565
BseCI	ATCGAT	1 cut(s)	1906
BseDI	CCNNGG	9 cut(s)	213, 522, 690, 1746, 2255, 2692, 3410, 3416, 3864
BseJI	GATNNNNATC	3 cut(s)	1065, 1710, 3483
BseLI	CCNNNNNNNGG	7 cut(s)	482, 489, 1769, 1808, 3171, 3172, 3564
BseMI	GCAATG	1 cut(s)	3609
BseNI	ACTGG	9 cut(s)	531, 1079, 1288, 1607, 2283, 2307, 3554, 3612, 3687
BseRI	GAGGAG	6 cut(s)	16, 34, 1515, 2589, 2931, 3519
BseSI	GKGCMC	3 cut(s)	844, 2208, 2500
BseX3I	CGGCCG	1 cut(s)	519
BseYI	CCCAGC	2 cut(s)	101, 576
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	3 cut(s)	524, 667, 706
Bsh1285I	CGRYCG	2 cut(s)	480, 522
BshFI	GGCC	8 cut(s)	400, 475, 521, 530, 2206, 3075, 3415, 3762
BshNI	GGYRCC	2 cut(s)	3259, 3421
BshTI	ACCGGT	1 cut(s)	1303
BshVI	ATCGAT	1 cut(s)	1906
BsiEI	CGRYCG	2 cut(s)	480, 522
BsiHKAI	GWGCWC	2 cut(s)	497, 844
BsiHKCI	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
BsiSI	CCGG	8 cut(s)	264, 335, 476, 483, 1202, 1304, 2518, 2650
BslFI	GGGAC	2 cut(s)	1711, 2080
BslI	CCNNNNNNNGG	7 cut(s)	482, 489, 1769, 1808, 3171, 3172, 3564
BsmBI	CGTCTC	1 cut(s)	1946
BsmFI	GGGAC	2 cut(s)	1711, 2080
BsmI	GAATGC	2 cut(s)	1236, 3345
BsnI	GGCC	8 cut(s)	400, 475, 521, 530, 2206, 3075, 3415, 3762
Bso31I	GGTCTC	4 cut(s)	627, 2075, 2265, 3119
BsoBI	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
Bsp119I	TTCGAA	2 cut(s)	2642, 3890
Bsp120I	GGGCCC	1 cut(s)	2204
Bsp1286I	GDGCHC	4 cut(s)	497, 844, 2208, 2500
Bsp1720I	GCTNAGC	2 cut(s)	240, 268
BspANI	GGCC	8 cut(s)	400, 475, 521, 530, 2206, 3075, 3415, 3762
BspDI	ATCGAT	1 cut(s)	1906
BspFNI	CGCG	3 cut(s)	524, 667, 706
BspHI	TCATGA	2 cut(s)	1756, 3733
BspMAI	CTGCAG	2 cut(s)	2242, 3301
BspMI	ACCTGC	3 cut(s)	6, 1516, 2231
BspOI	GCTAGC	1 cut(s)	3672
BspPI	GGATC	8 cut(s)	102, 1581, 1653, 1819, 2509, 2773, 3473, 3875
BspT104I	TTCGAA	2 cut(s)	2642, 3890
BspT107I	GGYRCC	2 cut(s)	3259, 3421
BspTI	CTTAAG	2 cut(s)	1211, 3703
BspTNI	GGTCTC	4 cut(s)	627, 2075, 2265, 3119
BsrDI	GCAATG	1 cut(s)	3609
BsrFI	RCCGGY	4 cut(s)	334, 475, 482, 1303
BsrI	ACTGG	9 cut(s)	531, 1079, 1288, 1607, 2283, 2307, 3554, 3612, 3687
BssAI	RCCGGY	4 cut(s)	334, 475, 482, 1303
BssECI	CCNNGG	9 cut(s)	213, 522, 690, 1746, 2255, 2692, 3410, 3416, 3864
BssNI	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
BssSI	CACGAG	1 cut(s)	2970
BssT1I	CCWWGG	6 cut(s)	213, 690, 1746, 2255, 3410, 3864
Bst2BI	CACGAG	1 cut(s)	2970
Bst2UI	CCWGG	2 cut(s)	472, 3565
Bst6I	CTCTTC	1 cut(s)	1478
BstACI	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
BstAFI	CTTAAG	2 cut(s)	1211, 3703
BstBI	TTCGAA	2 cut(s)	2642, 3890
BstDSI	CCRYGG	2 cut(s)	522, 2692
BstFNI	CGCG	3 cut(s)	524, 667, 706
BstH2I	RGCGCY	1 cut(s)	3263
BstHHI	GCGC	3 cut(s)	706, 2460, 3262
BstMCI	CGRYCG	2 cut(s)	480, 522
BstNI	CCWGG	2 cut(s)	472, 3565
BstNSI	RCATGY	3 cut(s)	652, 3290, 3659
BstSCI	CCNGG	4 cut(s)	470, 1201, 2517, 3563
BstSFI	CTRYAG	5 cut(s)	1341, 1719, 2238, 2658, 3297
BstSLI	GKGCMC	3 cut(s)	844, 2208, 2500
BstUI	CGCG	3 cut(s)	524, 667, 706
BstV2I	GAAGAC	3 cut(s)	1881, 2166, 2442
BstX2I	RGATCY	4 cut(s)	107, 1811, 3451, 3478
BstYI	RGATCY	4 cut(s)	107, 1811, 3451, 3478
BstZI	CGGCCG	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	1906
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	2 cut(s)	1390, 3547
BsuRI	GGCC	8 cut(s)	400, 475, 521, 530, 2206, 3075, 3415, 3762
BsuTUI	ATCGAT	1 cut(s)	1906
BtgI	CCRYGG	2 cut(s)	522, 2692
BtgZI	GCGATG	1 cut(s)	1136
BtsI	GCAGTG	3 cut(s)	625, 3721, 3904
BtsIMutI	CAGTG	9 cut(s)	538, 625, 1157, 1728, 2092, 3126, 3694, 3721, 3904
BveI	ACCTGC	3 cut(s)	6, 1516, 2231
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	2 cut(s)	1756, 3733
CciNI	GCGGCCGC	1 cut(s)	519
CfoI	GCGC	3 cut(s)	706, 2460, 3262
Cfr10I	RCCGGY	4 cut(s)	334, 475, 482, 1303
Cfr13I	GGNCC	6 cut(s)	398, 2094, 2204, 2205, 2647, 3143
Cfr42I	CCGCGG	1 cut(s)	525
ClaI	ATCGAT	1 cut(s)	1906
CseI	GACGC	7 cut(s)	218, 306, 327, 348, 1175, 1928, 3498
CspAI	ACCGGT	1 cut(s)	1303
DinI	GGCGCC	1 cut(s)	3261
DraIII	CACNNNGTG	2 cut(s)	1251, 3023
DrdI	GACNNNNNNGTC	1 cut(s)	2257
DseDI	GACNNNNNNGTC	1 cut(s)	2257
EaeI	YGGCCR	3 cut(s)	519, 528, 3073
EagI	CGGCCG	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	1478
EarI	CTCTTC	1 cut(s)	1478
EciI	GGCGGA	2 cut(s)	121, 142
Ecl136II	GAGCTC	1 cut(s)	495
EclXI	CGGCCG	1 cut(s)	519
Eco130I	CCWWGG	6 cut(s)	213, 690, 1746, 2255, 3410, 3864
Eco147I	AGGCCT	1 cut(s)	3762
Eco24I	GRGCYC	2 cut(s)	497, 2208
Eco31I	GGTCTC	4 cut(s)	627, 2075, 2265, 3119
Eco32I	GATATC	5 cut(s)	714, 1799, 1999, 2829, 3544
Eco47I	GGWCC	3 cut(s)	2094, 2647, 3143
Eco52I	CGGCCG	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	6 cut(s)	368, 496, 643, 720, 930, 3417
EcoICRI	GAGCTC	1 cut(s)	495
EcoRI	GAATTC	2 cut(s)	1336, 1374
EcoRII	CCWGG	2 cut(s)	470, 3563
EcoRV	GATATC	5 cut(s)	714, 1799, 1999, 2829, 3544
EcoT14I	CCWWGG	6 cut(s)	213, 690, 1746, 2255, 3410, 3864
EcoT38I	GRGCYC	2 cut(s)	497, 2208
EgeI	GGCGCC	1 cut(s)	3261
EheI	GGCGCC	1 cut(s)	3261
ErhI	CCWWGG	6 cut(s)	213, 690, 1746, 2255, 3410, 3864
Esp3I	CGTCTC	1 cut(s)	1946
FalI	AAGNNNNNCTT	6 cut(s)	251, 283, 2322, 2354, 2979, 3011
FaqI	GGGAC	2 cut(s)	1711, 2080
FauNDI	CATATG	1 cut(s)	775
FbaI	TGATCA	4 cut(s)	1711, 1912, 2215, 3460
FriOI	GRGCYC	2 cut(s)	497, 2208
GlaI	GCGC	3 cut(s)	705, 2459, 3261
GsaI	CCCAGC	2 cut(s)	105, 580
GsuI	CTGGAG	4 cut(s)	157, 753, 1590, 2414
HaeII	RGCGCY	1 cut(s)	3263
HaeIII	GGCC	8 cut(s)	400, 475, 521, 530, 2206, 3075, 3415, 3762
HapII	CCGG	8 cut(s)	264, 335, 476, 483, 1202, 1304, 2518, 2650
HgaI	GACGC	7 cut(s)	218, 306, 327, 348, 1175, 1928, 3498
HhaI	GCGC	3 cut(s)	706, 2460, 3262
Hin1I	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
Hin6I	GCGC	3 cut(s)	704, 2458, 3260
HinP1I	GCGC	3 cut(s)	704, 2458, 3260
HincII	GTYRAC	2 cut(s)	612, 3087
HindII	GTYRAC	2 cut(s)	612, 3087
HindIII	AAGCTT	1 cut(s)	1779
HpaII	CCGG	8 cut(s)	264, 335, 476, 483, 1202, 1304, 2518, 2650
HphI	GGTGA	3 cut(s)	497, 2750, 3613
Hpy166II	GTNNAC	8 cut(s)	612, 842, 905, 1003, 1208, 1254, 3087, 3245
Hpy8I	GTNNAC	8 cut(s)	612, 842, 905, 1003, 1208, 1254, 3087, 3245
HpyCH4IV	ACGT	2 cut(s)	907, 945
HpySE526I	ACGT	2 cut(s)	907, 945
Hsp92I	GRCGYC	6 cut(s)	210, 317, 338, 359, 1186, 3260
HspAI	GCGC	3 cut(s)	704, 2458, 3260
KasI	GGCGCC	1 cut(s)	3259
KpnI	GGTACC	1 cut(s)	3425
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
Ksp22I	TGATCA	4 cut(s)	1711, 1912, 2215, 3460
KspI	CCGCGG	1 cut(s)	525
LweI	GCATC	7 cut(s)	865, 2461, 2584, 3214, 3535, 3682, 3848
MaeII	ACGT	2 cut(s)	907, 945
MaeIII	GTNAC	5 cut(s)	1414, 1498, 2050, 3614, 3629
MfeI	CAATTG	1 cut(s)	1896
MflI	RGATCY	4 cut(s)	107, 1811, 3451, 3478
MhlI	GDGCHC	4 cut(s)	497, 844, 2208, 2500
MlsI	TGGCCA	1 cut(s)	3075
MluNI	TGGCCA	1 cut(s)	3075
Mly113I	GGCGCC	1 cut(s)	3260
MlyI	GAGTC	7 cut(s)	35, 131, 286, 806, 1988, 3445, 3785
MmeI	TCCRAC	5 cut(s)	63, 72, 90, 117, 1883
Mox20I	TGGCCA	1 cut(s)	3075
MroNI	GCCGGC	1 cut(s)	334
MroXI	GAANNNNTTC	2 cut(s)	595, 1595
MscI	TGGCCA	1 cut(s)	3075
MslI	CAYNNNNRTG	1 cut(s)	1229
Msp20I	TGGCCA	1 cut(s)	3075
MspA1I	CMGCKG	4 cut(s)	403, 524, 3149, 3236
MspCI	CTTAAG	2 cut(s)	1211, 3703
MspI	CCGG	8 cut(s)	264, 335, 476, 483, 1202, 1304, 2518, 2650
MspR9I	CCNGG	4 cut(s)	472, 1203, 2519, 3565
MunI	CAATTG	1 cut(s)	1896
Mva1269I	GAATGC	2 cut(s)	1236, 3345
MvaI	CCWGG	2 cut(s)	472, 3565
MvnI	CGCG	3 cut(s)	524, 667, 706
NaeI	GCCGGC	1 cut(s)	336
NarI	GGCGCC	1 cut(s)	3260
NciI	CCSGG	2 cut(s)	1203, 2519
NdeI	CATATG	1 cut(s)	775
NgoMIV	GCCGGC	1 cut(s)	334
NheI	GCTAGC	1 cut(s)	3668
NmeAIII	GCCGAG	2 cut(s)	66, 425
NmuCI	GTSAC	1 cut(s)	2050
NotI	GCGGCCGC	1 cut(s)	519
NspI	RCATGY	3 cut(s)	652, 3290, 3659
NspV	TTCGAA	2 cut(s)	2642, 3890
PaeI	GCATGC	1 cut(s)	652
PaeR7I	CTCGAG	2 cut(s)	720, 930
PagI	TCATGA	2 cut(s)	1756, 3733
PceI	AGGCCT	1 cut(s)	3762
PcsI	WCGNNNNNNNCGW	3 cut(s)	293, 314, 335
PctI	GAATGC	2 cut(s)	1236, 3345
PdiI	GCCGGC	1 cut(s)	336
PdmI	GAANNNNTTC	2 cut(s)	595, 1595
PfoI	TCCNGGA	1 cut(s)	2517
PinAI	ACCGGT	1 cut(s)	1303
PleI	GAGTC	7 cut(s)	35, 131, 286, 805, 1987, 3444, 3784
PluTI	GGCGCC	1 cut(s)	3263
PpsI	GAGTC	7 cut(s)	35, 131, 286, 805, 1987, 3444, 3784
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	470, 3563
PspFI	CCCAGC	2 cut(s)	101, 576
PspGI	CCWGG	2 cut(s)	470, 3563
PspOMI	GGGCCC	1 cut(s)	2204
PspPI	GGNCC	6 cut(s)	398, 2094, 2204, 2205, 2647, 3143
PspXI	VCTCGAGB	1 cut(s)	930
PstI	CTGCAG	2 cut(s)	2242, 3301
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	4 cut(s)	107, 1811, 3451, 3478
PvuII	CAGCTG	1 cut(s)	3236
RseI	CAYNNNNRTG	1 cut(s)	1229
SacI	GAGCTC	1 cut(s)	497
SacII	CCGCGG	1 cut(s)	525
Sau96I	GGNCC	6 cut(s)	398, 2094, 2204, 2205, 2647, 3143
ScaI	AGTACT	1 cut(s)	2528
SchI	GAGTC	7 cut(s)	35, 131, 286, 806, 1988, 3445, 3785
ScrFI	CCNGG	4 cut(s)	472, 1203, 2519, 3565
SduI	GDGCHC	4 cut(s)	497, 844, 2208, 2500
SfaNI	GCATC	7 cut(s)	865, 2461, 2584, 3214, 3535, 3682, 3848
SfcI	CTRYAG	5 cut(s)	1341, 1719, 2238, 2658, 3297
SfiI	GGCCNNNNNGGCC	1 cut(s)	527
SfoI	GGCGCC	1 cut(s)	3261
Sfr274I	CTCGAG	2 cut(s)	720, 930
Sfr303I	CCGCGG	1 cut(s)	525
SfuI	TTCGAA	2 cut(s)	2642, 3890
SgrAI	CRCCGGYG	1 cut(s)	482
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	3 cut(s)	2094, 2647, 3143
SlaI	CTCGAG	2 cut(s)	720, 930
SmiMI	CAYNNNNRTG	1 cut(s)	1229
SmlI	CTYRAG	5 cut(s)	720, 930, 1211, 2440, 3703
SmoI	CTYRAG	5 cut(s)	720, 930, 1211, 2440, 3703
SphI	GCATGC	1 cut(s)	652
SseBI	AGGCCT	1 cut(s)	3762
SspDI	GGCGCC	1 cut(s)	3259
SspI	AATATT	2 cut(s)	957, 3008
SstI	GAGCTC	1 cut(s)	497
StuI	AGGCCT	1 cut(s)	3762
StyD4I	CCNGG	4 cut(s)	470, 1201, 2517, 3563
StyI	CCWWGG	6 cut(s)	213, 690, 1746, 2255, 3410, 3864
TaiI	ACGT	2 cut(s)	910, 948
TatI	WGTACW	3 cut(s)	2526, 2576, 2925
TauI	GCSGC	8 cut(s)	158, 161, 180, 403, 521, 524, 527, 530
TscAI	CASTG	9 cut(s)	538, 625, 1157, 1728, 2092, 3133, 3694, 3721, 3904
TseFI	GTSAC	1 cut(s)	2050
Tsp45I	GTSAC	1 cut(s)	2050
TspGWI	ACGGA	4 cut(s)	344, 1785, 2253, 2771
TspRI	CASTG	9 cut(s)	538, 625, 1157, 1728, 2092, 3133, 3694, 3721, 3904
Vha464I	CTTAAG	2 cut(s)	1211, 3703
VneI	GTGCAC	1 cut(s)	840
VpaK11BI	GGWCC	3 cut(s)	2094, 2647, 3143
XapI	RAATTY	9 cut(s)	892, 977, 1336, 1374, 1448, 1595, 1887, 2041, 2941
XceI	RCATGY	3 cut(s)	652, 3290, 3659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1280
XhoI	CTCGAG	2 cut(s)	720, 930
XmnI	GAANNNNTTC	2 cut(s)	595, 1595
ZrmI	AGTACT	1 cut(s)	2528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.