Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006892

Physical Location & Seq

Genomic Coordinates Forward (+)

23515339 .. 23518466

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGTATTTGAATGGAGGAGATCTATACTCATTGTTGAGGAATTTAGGCTGCTTGGATGAGGAGGTTGCTCGTATATATATAGCAGAAGTGGTTCTTGCTTTAGAATATTTACATTCACTTCGTGTGGTTCATCGTGATTTGAAGCCTGACAATTTGTTAATTGCTCATGACGGCCATGTTAAGTTGACAGACTTTGGGCTTTCGAAGGTTGGTCTCATCAACAGCACTGATGATTTATCTGGTCCAGCAGTTAGTAGCACATCCCTTCTAGGGGAAGATGAACCCGAATCATCTCTCTCCGAGCATCAACGAGAAAGCCGAAAGAAACGTTCTGCTGTCGGTACACCTGACTATTTGGCACCAGAGATACTTTTGGGAACAGGACATGGTGCAACTGCAGATTGGTGGTCTGTTGGTGTCATTTTATTTGAATTGATTGTTGGAATTCCACCCTTCAATGCGGAGCACCCTCAGACTATATTTGATAATATTCTCAACCGTAATATACCTTGGCCTGGGGTTGGTGAGATGAGTCCTGAAGCACGGGATCTTATTGATCAGTTATTGACAGAAGATCCTAATCAAAGACTTGGAGCTCGAGGAGCATCAGAGGTGAAGCAGCATCCATTCTTTAAAGATATCAACTGGGACACACTTGCCAGGCAAAAGGCTGCTTTTGTTCCCTCTTCAGAGAGTGCATTAGATACCAGTTACTTCACCAGTCGTTACTCATGGAATCCTTCAGATGAACATGTATATCAACCTAGTGACATGGATGATTCCAGTGATTCTGATAGCTTAAGTGGCAGCAGCAGTTGCTTGAGCAACCGTCATGAGGAAGTGGGTGATGAATGTGGGGGTCTGACAGAGTTCGAGTCTGGCTCTTCCATCAATTACTCTTTCAGCAATTTCTCATTTAAGAATCTCTCCCAGCTTGCATCAATCAACTATGATCTGCTTTCAAAGGGTTTTAAGGATGATCCGTCACTGAATCCCAGCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

336

Amino Acids

36.9

Weight (kDa)

4.55

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17850
fragaria_vesca	FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560
malus_domestica	MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1
prunus_persica	Prupe.5G235400_v2.0.a1
pyrus_communis	pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940
rosa_chinensis	RchiOBHm_Chr7g0178091
rosa_laevigata	RLG00000005472
rosa_multiflora	Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275190
rosa_rugosa	Rorug06G0413400 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900
rosa_wichuraiana	Rw7G001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	1 cut(s)	464
AclI	AACGTT	1 cut(s)	331
AclWI	GGATC	3 cut(s)	558, 572, 977
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	43, 447
AcuI	CTGAAG	3 cut(s)	561, 675, 729
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	5 cut(s)	273, 274, 518, 524, 838
AflII	CTTAAG	1 cut(s)	802
AflIII	ACRYGT	1 cut(s)	754
AgsI	TTSAA	5 cut(s)	13, 145, 434, 460, 966
AjnI	CCWGG	2 cut(s)	517, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	3 cut(s)	599, 801, 937
AluI	AGCT	3 cut(s)	599, 801, 937
Alw21I	GWGCWC	2 cut(s)	471, 601
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	558, 572, 977
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	2 cut(s)	175, 515
ApeKI	GCWGC	5 cut(s)	51, 622, 674, 810, 813
ApoI	RAATTY	2 cut(s)	43, 447
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	539, 628, 712, 860
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	471, 601
BbvI	GCAGC	5 cut(s)	38, 634, 661, 822, 825
BccI	CCATC	1 cut(s)	899
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	2 cut(s)	519, 664
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	272, 768
BfmI	CTRYAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	802
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	5 cut(s)	52, 623, 675, 811, 814
BlsI	GCNGC	5 cut(s)	53, 624, 676, 812, 815
Bme1390I	CCNGG	2 cut(s)	519, 664
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	519, 664
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	4 cut(s)	316, 617, 634, 950
BmuI	ACTGGG	1 cut(s)	658
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
Bpu14I	TTCGAA	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	844
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	512, 518
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 274, 518, 524, 838
Bse1I	ACTGG	4 cut(s)	653, 711, 723, 786
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	519, 664
BseDI	CCNNGG	2 cut(s)	512, 518
BseGI	GGATG	5 cut(s)	64, 263, 625, 784, 985
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	5 cut(s)	273, 274, 518, 524, 838
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	4 cut(s)	653, 711, 723, 786
BseRI	GAGGAG	3 cut(s)	33, 77, 618
BseXI	GCAGC	5 cut(s)	38, 634, 661, 822, 825
BseYI	CCCAGC	2 cut(s)	933, 998
BshFI	GGCC	2 cut(s)	177, 517
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	471, 601
BsiHKCI	CYCGRG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	5 cut(s)	273, 274, 518, 524, 838
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	177, 517
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	471, 601
Bsp143I	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	177, 517
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	2 cut(s)	169, 835
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	3 cut(s)	558, 572, 977
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	802
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	4 cut(s)	653, 711, 723, 786
BssECI	CCNNGG	2 cut(s)	512, 518
BssMI	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	519, 664
Bst4CI	ACNGT	2 cut(s)	503, 833
Bst6I	CTCTTC	2 cut(s)	694, 892
BstAFI	CTTAAG	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	819
BstBAI	YACGTR	1 cut(s)	1005
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	939
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	5 cut(s)	64, 263, 625, 784, 985
BstKTI	GATC	6 cut(s)	25, 553, 562, 580, 958, 985
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 807, 819
BstNI	CCWGG	2 cut(s)	519, 664
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	517, 662
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	5 cut(s)	38, 634, 661, 822, 825
BstX2I	RGATCY	3 cut(s)	22, 550, 577
BstYI	RGATCY	3 cut(s)	22, 550, 577
BsuRI	GGCC	2 cut(s)	177, 517
BtsCI	GGATG	5 cut(s)	64, 263, 625, 784, 985
BtsIMutI	CAGTG	3 cut(s)	228, 793, 989
Cac8I	GCNNGC	1 cut(s)	939
CciI	TCATGA	2 cut(s)	169, 835
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	7 cut(s)	170, 179, 389, 735, 755, 775, 836
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	6 cut(s)	24, 552, 561, 579, 957, 984
DpnII	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
DraI	TTTAAA	1 cut(s)	637
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	694, 892
EarI	CTCTTC	2 cut(s)	694, 892
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	3 cut(s)	561, 675, 729
Eco88I	CYCGRG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	517, 662
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	7 cut(s)	173, 182, 392, 738, 758, 778, 839
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	7 cut(s)	169, 178, 388, 734, 754, 774, 835
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	5 cut(s)	52, 623, 675, 811, 814
FokI	GGATG	5 cut(s)	71, 250, 612, 791, 992
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	5 cut(s)	52, 623, 675, 811, 814
FspBI	CTAG	2 cut(s)	272, 768
GluI	GCNGC	5 cut(s)	52, 623, 675, 811, 814
GsaI	CCCAGC	2 cut(s)	937, 1002
HaeIII	GGCC	2 cut(s)	177, 517
Hin1II	CATG	7 cut(s)	173, 182, 392, 738, 758, 778, 839
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	8 cut(s)	290, 535, 739, 782, 791, 878, 925, 994
HphI	GGTGA	4 cut(s)	539, 628, 712, 860
Hpy166II	GTNNAC	2 cut(s)	189, 347
Hpy188I	TCNGA	7 cut(s)	304, 477, 613, 694, 748, 796, 867
Hpy188III	TCNNGA	4 cut(s)	137, 170, 539, 836
Hpy8I	GTNNAC	2 cut(s)	189, 347
HpyAV	CCTTC	4 cut(s)	202, 278, 466, 753
HpyCH4III	ACNGT	2 cut(s)	503, 833
HpyCH4IV	ACGT	2 cut(s)	331, 1004
HpyCH4V	TGCA	4 cut(s)	395, 401, 701, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 807, 819
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	331, 1004
Hsp92II	CATG	7 cut(s)	173, 182, 392, 738, 758, 778, 839
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	3 cut(s)	466, 596, 605
Lsp1109I	GCAGC	5 cut(s)	38, 634, 661, 822, 825
LweI	GCATC	4 cut(s)	316, 617, 634, 950
MaeI	CTAG	2 cut(s)	272, 768
MaeII	ACGT	2 cut(s)	331, 1004
MaeIII	GTNAC	4 cut(s)	713, 728, 770, 987
MalI	GATC	6 cut(s)	24, 552, 561, 579, 957, 984
MboI	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
MboII	GAAGA	4 cut(s)	290, 587, 681, 879
MflI	RGATCY	3 cut(s)	22, 550, 577
MhlI	GDGCHC	2 cut(s)	471, 601
MluCI	AATT	7 cut(s)	43, 154, 162, 434, 447, 895, 910
MlyI	GAGTC	2 cut(s)	544, 887
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	9 cut(s)	11, 33, 55, 58, 483, 596, 607, 697, 832
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	6 cut(s)	161, 183, 636, 803, 921, 975
MspCI	CTTAAG	1 cut(s)	802
MspR9I	CCNGG	2 cut(s)	519, 664
MvaI	CCWGG	2 cut(s)	519, 664
MwoI	GCNNNNNNNGC	3 cut(s)	605, 807, 819
NdeII	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
NlaIII	CATG	7 cut(s)	173, 182, 392, 738, 758, 778, 839
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	770, 987
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	2 cut(s)	169, 835
PciI	ACATGT	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	6 cut(s)	290, 739, 782, 791, 925, 994
PkrI	GCNGC	5 cut(s)	53, 624, 676, 812, 815
PleI	GAGTC	2 cut(s)	543, 886
PpsI	GAGTC	2 cut(s)	543, 886
Ppu21I	YACGTR	1 cut(s)	1005
PscI	ACATGT	1 cut(s)	754
Psp124BI	GAGCTC	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	517, 662
PspFI	CCCAGC	2 cut(s)	933, 998
PspGI	CCWGG	2 cut(s)	517, 662
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	245
PspXI	VCTCGAGB	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	3 cut(s)	22, 550, 577
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	6 cut(s)	161, 183, 636, 803, 921, 975
SatI	GCNGC	5 cut(s)	52, 623, 675, 811, 814
Sau3AI	GATC	6 cut(s)	22, 550, 559, 577, 955, 982
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	544, 887
ScrFI	CCNGG	2 cut(s)	519, 664
SduI	GDGCHC	2 cut(s)	471, 601
SfaNI	GCATC	4 cut(s)	316, 617, 634, 950
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	600, 802, 823
SmoI	CTYRAG	3 cut(s)	600, 802, 823
Sse9I	AATT	7 cut(s)	43, 154, 162, 434, 447, 895, 910
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	2 cut(s)	110, 493
SspMI	CTAG	2 cut(s)	272, 768
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	517, 662
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	2 cut(s)	503, 833
TaiI	ACGT	2 cut(s)	334, 1007
TaqI	TCGA	3 cut(s)	206, 601, 876
TasI	AATT	7 cut(s)	43, 154, 162, 434, 447, 895, 910
TfiI	GAWTC	6 cut(s)	290, 739, 782, 791, 925, 994
Tru1I	TTAA	6 cut(s)	161, 183, 636, 803, 921, 975
Tru9I	TTAA	6 cut(s)	161, 183, 636, 803, 921, 975
TscAI	CASTG	3 cut(s)	235, 793, 996
TseFI	GTSAC	2 cut(s)	770, 987
TseI	GCWGC	5 cut(s)	51, 622, 674, 810, 813
Tsp45I	GTSAC	2 cut(s)	770, 987
TspDTI	ATGAA	4 cut(s)	122, 297, 765, 867
TspGWI	ACGGA	1 cut(s)	975
TspRI	CASTG	3 cut(s)	235, 793, 996
Vha464I	CTTAAG	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	43, 447
XceI	RCATGY	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	272, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.