Protein kinase domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17850 |
| fragaria_vesca | FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 |
| malus_domestica | MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1 |
| prunus_persica | Prupe.5G235400_v2.0.a1 |
| pyrus_communis | pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940 |
| rosa_chinensis | RchiOBHm_Chr7g0178091 |
| rosa_laevigata | RLG00000005472 |
| rosa_multiflora | Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00275190 |
| rosa_rugosa | Rorug06G0413400 Rorug06G0413500 Rorug06G0413500 |
| rosa_samantha | Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900 |
| rosa_wichuraiana | Rw7G001000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2275 |
| AatII | GACGTC | 1 cut(s) | 2675 |
| AbsI | CCTCGAGG | 1 cut(s) | 966 |
| AccB1I | GGYRCC | 2 cut(s) | 694, 3277 |
| AccI | GTMKAC | 2 cut(s) | 326, 2191 |
| AccII | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| AclI | AACGTT | 1 cut(s) | 3247 |
| AcoI | YGGCCR | 1 cut(s) | 3091 |
| AcyI | GRCGYC | 2 cut(s) | 1222, 2672 |
| AdeI | CACNNNGTG | 2 cut(s) | 1287, 3041 |
| AfaI | GTAC | 7 cut(s) | 187, 796, 942, 1291, 2596, 2641, 3262 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1805, 2667, 3440, 3754 |
| AflII | CTTAAG | 1 cut(s) | 775 |
| AflIII | ACRYGT | 1 cut(s) | 3670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2671 |
| AhlI | ACTAGT | 1 cut(s) | 3626 |
| AjiI | CACGTC | 1 cut(s) | 2632 |
| AjnI | CCWGG | 4 cut(s) | 755, 1396, 3439, 3578 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3342, 3374 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1329, 1361 |
| Alw21I | GWGCWC | 2 cut(s) | 880, 3619 |
| Alw44I | GTGCAC | 2 cut(s) | 876, 3615 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 806 |
| Ama87I | CYCGRG | 2 cut(s) | 401, 966 |
| AoxI | GGCC | 7 cut(s) | 154, 431, 2298, 3091, 3431, 3437, 3778 |
| ApaLI | GTGCAC | 2 cut(s) | 876, 3615 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 308, 340 |
| AspA2I | CCTAGG | 1 cut(s) | 2273 |
| AspLEI | GCGC | 3 cut(s) | 197, 515, 1374 |
| AsuC2I | CCSGG | 4 cut(s) | 510, 1239, 1521, 2537 |
| AsuHPI | GGTGA | 5 cut(s) | 533, 1527, 3544, 3628, 3776 |
| AvaI | CYCGRG | 2 cut(s) | 401, 966 |
| AvaII | GGWCC | 6 cut(s) | 1585, 1657, 2112, 2222, 2665, 3161 |
| AvrII | CCTAGG | 1 cut(s) | 2273 |
| BaeGI | GKGCMC | 3 cut(s) | 880, 2518, 3619 |
| BamHI | GGATCC | 1 cut(s) | 1411 |
| BanI | GGYRCC | 2 cut(s) | 694, 3277 |
| BanII | GRGCYC | 3 cut(s) | 92, 683, 3455 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 649, 681 |
| BauI | CACGAG | 1 cut(s) | 2988 |
| BbsI | GAAGAC | 3 cut(s) | 1899, 2136, 2460 |
| Bbv12I | GWGCWC | 2 cut(s) | 880, 3619 |
| BbvCI | CCTCAGC | 2 cut(s) | 727, 1329 |
| BccI | CCATC | 6 cut(s) | 53, 518, 1661, 1987, 2911, 3910 |
| BceAI | ACGGC | 5 cut(s) | 262, 418, 730, 2416, 3106 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 324, 358, 2845, 2879 |
| BciT130I | CCWGG | 4 cut(s) | 757, 1398, 3441, 3580 |
| BciVI | GTATCC | 1 cut(s) | 3616 |
| BclI | TGATCA | 2 cut(s) | 2233, 3475 |
| BcnI | CCSGG | 4 cut(s) | 510, 1239, 1521, 2537 |
| BcuI | ACTAGT | 1 cut(s) | 3626 |
| BfmI | CTRYAG | 8 cut(s) | 707, 1301, 1377, 1820, 2256, 2676, 3315, 3727 |
| BfoI | RGCGCY | 1 cut(s) | 516 |
| BfrI | CTTAAG | 1 cut(s) | 775 |
| BfuI | GTATCC | 1 cut(s) | 3616 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 2025, 3723 |
| BglII | AGATCT | 1 cut(s) | 2938 |
| BlnI | CCTAGG | 1 cut(s) | 2273 |
| BlpI | GCTNAGC | 1 cut(s) | 264 |
| Bme1390I | CCNGG | 8 cut(s) | 510, 757, 1239, 1398, 1521, 2537, 3441, 3580 |
| Bme18I | GGWCC | 6 cut(s) | 1585, 1657, 2112, 2222, 2665, 3161 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2671 |
| BmeT110I | CYCGRG | 2 cut(s) | 401, 966 |
| BmgBI | CACGTC | 1 cut(s) | 2632 |
| BmrFI | CCNGG | 8 cut(s) | 510, 757, 1239, 1398, 1521, 2537, 3441, 3580 |
| BmrI | ACTGGG | 2 cut(s) | 3574, 3909 |
| BmuI | ACTGGG | 2 cut(s) | 3574, 3909 |
| BpiI | GAAGAC | 3 cut(s) | 1899, 2136, 2460 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 247, 279, 3785, 3817 |
| BpmI | CTGGAG | 5 cut(s) | 789, 1191, 1380, 1602, 3462 |
| Bpu10I | CCTNAGC | 3 cut(s) | 727, 1329, 1746 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 4 cut(s) | 1103, 1145, 2479, 3760 |
| BpuMI | CCSGG | 4 cut(s) | 510, 1239, 1521, 2537 |
| Bsa29I | ATCGAT | 1 cut(s) | 1924 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1101, 2418, 3498 |
| BsaHI | GRCGYC | 2 cut(s) | 1222, 2672 |
| BsaI | GGTCTC | 6 cut(s) | 233, 666, 1444, 1497, 2283, 3137 |
| BsaJI | CCNNGG | 9 cut(s) | 243, 756, 828, 1758, 2273, 2294, 2661, 3428, 3434 |
| BsaWI | WCCGGW | 2 cut(s) | 1587, 2667 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 295, 325, 562, 592 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1805, 2667, 3440, 3754 |
| Bse3DI | GCAATG | 1 cut(s) | 1164 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1101, 2418, 3498 |
| BseBI | CCWGG | 4 cut(s) | 757, 1398, 3441, 3580 |
| BseCI | ATCGAT | 1 cut(s) | 1924 |
| BseDI | CCNNGG | 9 cut(s) | 243, 756, 828, 1758, 2273, 2294, 2661, 3428, 3434 |
| BseJI | GATNNNNATC | 3 cut(s) | 1101, 2418, 3498 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1805, 2667, 3440, 3754 |
| BseMI | GCAATG | 1 cut(s) | 1164 |
| BseRI | GAGGAG | 9 cut(s) | 16, 34, 834, 1880, 1883, 2607, 2949, 2993, 3534 |
| BseSI | GKGCMC | 3 cut(s) | 880, 2518, 3619 |
| BseYI | CCCAGC | 3 cut(s) | 566, 737, 3849 |
| Bsh1236I | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| BshFI | GGCC | 7 cut(s) | 156, 433, 2300, 3093, 3433, 3439, 3780 |
| BshNI | GGYRCC | 2 cut(s) | 694, 3277 |
| BshVI | ATCGAT | 1 cut(s) | 1924 |
| BsiHKAI | GWGCWC | 2 cut(s) | 880, 3619 |
| BsiHKCI | CYCGRG | 2 cut(s) | 401, 966 |
| BsiSI | CCGG | 7 cut(s) | 171, 509, 1238, 1520, 1588, 2536, 2668 |
| BslFI | GGGAC | 5 cut(s) | 39, 1598, 1723, 2098, 3581 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1805, 2667, 3440, 3754 |
| BsmBI | CGTCTC | 3 cut(s) | 402, 486, 1620 |
| BsmFI | GGGAC | 5 cut(s) | 39, 1598, 1723, 2098, 3581 |
| BsmI | GAATGC | 3 cut(s) | 1272, 2812, 3776 |
| BsnI | GGCC | 7 cut(s) | 156, 433, 2300, 3093, 3433, 3439, 3780 |
| Bso31I | GGTCTC | 6 cut(s) | 233, 666, 1444, 1497, 2283, 3137 |
| BsoBI | CYCGRG | 2 cut(s) | 401, 966 |
| Bsp1286I | GDGCHC | 6 cut(s) | 92, 683, 880, 2518, 3455, 3619 |
| Bsp1407I | TGTACA | 1 cut(s) | 794 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 264 |
| Bsp68I | TCGCGA | 1 cut(s) | 2768 |
| BspANI | GGCC | 7 cut(s) | 156, 433, 2300, 3093, 3433, 3439, 3780 |
| BspDI | ATCGAT | 1 cut(s) | 1924 |
| BspFNI | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| BspHI | TCATGA | 3 cut(s) | 1768, 3085, 3751 |
| BspMAI | CTGCAG | 5 cut(s) | 1305, 1381, 2260, 3319, 3731 |
| BspQI | GCTCTTC | 1 cut(s) | 3808 |
| BspT107I | GGYRCC | 2 cut(s) | 694, 3277 |
| BspTI | CTTAAG | 1 cut(s) | 775 |
| BspTNI | GGTCTC | 6 cut(s) | 233, 666, 1444, 1497, 2283, 3137 |
| BsrDI | GCAATG | 1 cut(s) | 1164 |
| BsrGI | TGTACA | 1 cut(s) | 794 |
| BssECI | CCNNGG | 9 cut(s) | 243, 756, 828, 1758, 2273, 2294, 2661, 3428, 3434 |
| BssNI | GRCGYC | 2 cut(s) | 1222, 2672 |
| BssSI | CACGAG | 1 cut(s) | 2988 |
| BssT1I | CCWWGG | 7 cut(s) | 243, 828, 1758, 2273, 2294, 2661, 3428 |
| Bst2BI | CACGAG | 1 cut(s) | 2988 |
| Bst2UI | CCWGG | 4 cut(s) | 757, 1398, 3441, 3580 |
| Bst4CI | ACNGT | 8 cut(s) | 53, 699, 1429, 1472, 1735, 2500, 3419, 3749 |
| Bst6I | CTCTTC | 2 cut(s) | 1493, 3808 |
| BstACI | GRCGYC | 2 cut(s) | 1222, 2672 |
| BstAFI | CTTAAG | 1 cut(s) | 775 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3735 |
| BstAUI | TGTACA | 1 cut(s) | 794 |
| BstC8I | GCNNGC | 9 cut(s) | 77, 366, 662, 693, 2021, 2326, 2518, 3015, 3855 |
| BstFNI | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| BstH2I | RGCGCY | 1 cut(s) | 516 |
| BstHHI | GCGC | 3 cut(s) | 197, 515, 1374 |
| BstNI | CCWGG | 4 cut(s) | 757, 1398, 3441, 3580 |
| BstNSI | RCATGY | 3 cut(s) | 691, 2137, 3674 |
| BstSCI | CCNGG | 8 cut(s) | 508, 755, 1237, 1396, 1519, 2535, 3439, 3578 |
| BstSFI | CTRYAG | 8 cut(s) | 707, 1301, 1377, 1820, 2256, 2676, 3315, 3727 |
| BstSLI | GKGCMC | 3 cut(s) | 880, 2518, 3619 |
| BstUI | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| BstV2I | GAAGAC | 3 cut(s) | 1899, 2136, 2460 |
| BstX2I | RGATCY | 6 cut(s) | 107, 1411, 2758, 2938, 3466, 3493 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 691, 1667 |
| BstYI | RGATCY | 6 cut(s) | 107, 1411, 2758, 2938, 3466, 3493 |
| Bsu15I | ATCGAT | 1 cut(s) | 1924 |
| BsuI | GTATCC | 1 cut(s) | 3616 |
| BsuRI | GGCC | 7 cut(s) | 156, 433, 2300, 3093, 3433, 3439, 3780 |
| BsuTUI | ATCGAT | 1 cut(s) | 1924 |
| BtrI | CACGTC | 1 cut(s) | 2632 |
| BtsIMutI | CAGTG | 5 cut(s) | 1193, 3144, 3617, 3709, 3922 |
| BtuMI | TCGCGA | 1 cut(s) | 2768 |
| Cac8I | GCNNGC | 9 cut(s) | 77, 366, 662, 693, 2021, 2326, 2518, 3015, 3855 |
| CaiI | CAGNNNCTG | 1 cut(s) | 806 |
| CciI | TCATGA | 3 cut(s) | 1768, 3085, 3751 |
| CfoI | GCGC | 3 cut(s) | 197, 515, 1374 |
| ClaI | ATCGAT | 1 cut(s) | 1924 |
| CseI | GACGC | 2 cut(s) | 1230, 1946 |
| Csp6I | GTAC | 7 cut(s) | 186, 795, 941, 1290, 2595, 2640, 3261 |
| CviQI | GTAC | 7 cut(s) | 186, 795, 941, 1290, 2595, 2640, 3261 |
| DraI | TTTAAA | 1 cut(s) | 3553 |
| DraIII | CACNNNGTG | 2 cut(s) | 1287, 3041 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2275 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2671 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2275 |
| EaeI | YGGCCR | 1 cut(s) | 3091 |
| Eam1104I | CTCTTC | 2 cut(s) | 1493, 3808 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2671 |
| EarI | CTCTTC | 2 cut(s) | 1493, 3808 |
| EciI | GGCGGA | 2 cut(s) | 189, 374 |
| Eco130I | CCWWGG | 7 cut(s) | 243, 828, 1758, 2273, 2294, 2661, 3428 |
| Eco24I | GRGCYC | 3 cut(s) | 92, 683, 3455 |
| Eco31I | GGTCTC | 6 cut(s) | 233, 666, 1444, 1497, 2283, 3137 |
| Eco32I | GATATC | 1 cut(s) | 3559 |
| Eco47I | GGWCC | 6 cut(s) | 1585, 1657, 2112, 2222, 2665, 3161 |
| Eco88I | CYCGRG | 2 cut(s) | 401, 966 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3778 |
| EcoRI | GAATTC | 4 cut(s) | 928, 1077, 1365, 1389 |
| EcoRII | CCWGG | 4 cut(s) | 755, 1396, 3439, 3578 |
| EcoRV | GATATC | 1 cut(s) | 3559 |
| EcoT14I | CCWWGG | 7 cut(s) | 243, 828, 1758, 2273, 2294, 2661, 3428 |
| EcoT38I | GRGCYC | 3 cut(s) | 92, 683, 3455 |
| ErhI | CCWWGG | 7 cut(s) | 243, 828, 1758, 2273, 2294, 2661, 3428 |
| Esp3I | CGTCTC | 3 cut(s) | 402, 486, 1620 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 252, 284, 2121, 2153, 2340, 2372, 2997, 3029 |
| FaqI | GGGAC | 5 cut(s) | 39, 1598, 1723, 2098, 3581 |
| FauI | CCCGC | 3 cut(s) | 84, 156, 3767 |
| FauNDI | CATATG | 1 cut(s) | 811 |
| FbaI | TGATCA | 2 cut(s) | 2233, 3475 |
| FblI | GTMKAC | 2 cut(s) | 326, 2191 |
| FriOI | GRGCYC | 3 cut(s) | 92, 683, 3455 |
| GlaI | GCGC | 3 cut(s) | 196, 514, 1373 |
| GsaI | CCCAGC | 3 cut(s) | 570, 741, 3853 |
| GsuI | CTGGAG | 5 cut(s) | 789, 1191, 1380, 1602, 3462 |
| HaeII | RGCGCY | 1 cut(s) | 516 |
| HaeIII | GGCC | 7 cut(s) | 156, 433, 2300, 3093, 3433, 3439, 3780 |
| HapII | CCGG | 7 cut(s) | 171, 509, 1238, 1520, 1588, 2536, 2668 |
| HgaI | GACGC | 2 cut(s) | 1230, 1946 |
| HhaI | GCGC | 3 cut(s) | 197, 515, 1374 |
| Hin1I | GRCGYC | 2 cut(s) | 1222, 2672 |
| Hin6I | GCGC | 3 cut(s) | 195, 513, 1372 |
| HinP1I | GCGC | 3 cut(s) | 195, 513, 1372 |
| HincII | GTYRAC | 3 cut(s) | 651, 1951, 3105 |
| HindII | GTYRAC | 3 cut(s) | 651, 1951, 3105 |
| HindIII | AAGCTT | 1 cut(s) | 1689 |
| HpaII | CCGG | 7 cut(s) | 171, 509, 1238, 1520, 1588, 2536, 2668 |
| HphI | GGTGA | 5 cut(s) | 533, 1527, 3544, 3628, 3776 |
| Hpy99I | CGWCG | 1 cut(s) | 703 |
| HpyCH4III | ACNGT | 8 cut(s) | 53, 699, 1429, 1472, 1735, 2500, 3419, 3749 |
| HpyCH4IV | ACGT | 6 cut(s) | 2043, 2085, 2631, 2672, 2833, 3247 |
| HpySE526I | ACGT | 6 cut(s) | 2043, 2085, 2631, 2672, 2833, 3247 |
| Hsp92I | GRCGYC | 2 cut(s) | 1222, 2672 |
| HspAI | GCGC | 3 cut(s) | 195, 513, 1372 |
| Ksp22I | TGATCA | 2 cut(s) | 2233, 3475 |
| LguI | GCTCTTC | 1 cut(s) | 3808 |
| MaeII | ACGT | 6 cut(s) | 2043, 2085, 2631, 2672, 2833, 3247 |
| MaeIII | GTNAC | 7 cut(s) | 761, 2068, 2105, 2834, 3629, 3644, 3764 |
| MflI | RGATCY | 6 cut(s) | 107, 1411, 2758, 2938, 3466, 3493 |
| MhlI | GDGCHC | 6 cut(s) | 92, 683, 880, 2518, 3455, 3619 |
| MlyI | GAGTC | 9 cut(s) | 35, 208, 265, 304, 842, 1562, 2006, 2263, 3803 |
| MmeI | TCCRAC | 6 cut(s) | 72, 117, 1054, 1603, 1901, 3704 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1265 |
| MspA1I | CMGCKG | 1 cut(s) | 731 |
| MspCI | CTTAAG | 1 cut(s) | 775 |
| MspI | CCGG | 7 cut(s) | 171, 509, 1238, 1520, 1588, 2536, 2668 |
| MspR9I | CCNGG | 8 cut(s) | 510, 757, 1239, 1398, 1521, 2537, 3441, 3580 |
| Mva1269I | GAATGC | 3 cut(s) | 1272, 2812, 3776 |
| MvaI | CCWGG | 4 cut(s) | 757, 1398, 3441, 3580 |
| MvnI | CGCG | 5 cut(s) | 79, 197, 302, 703, 2768 |
| NciI | CCSGG | 4 cut(s) | 510, 1239, 1521, 2537 |
| NdeI | CATATG | 1 cut(s) | 811 |
| NmeAIII | GCCGAG | 1 cut(s) | 3415 |
| NmuCI | GTSAC | 5 cut(s) | 761, 2068, 2105, 2834, 3764 |
| NruI | TCGCGA | 1 cut(s) | 2768 |
| NspI | RCATGY | 3 cut(s) | 691, 2137, 3674 |
| PaeR7I | CTCGAG | 1 cut(s) | 966 |
| PagI | TCATGA | 3 cut(s) | 1768, 3085, 3751 |
| PciI | ACATGT | 1 cut(s) | 3670 |
| PciSI | GCTCTTC | 1 cut(s) | 3808 |
| PctI | GAATGC | 3 cut(s) | 1272, 2812, 3776 |
| PfeI | GAWTC | 9 cut(s) | 722, 839, 1763, 2078, 3655, 3698, 3707, 3841, 3910 |
| PfoI | TCCNGGA | 1 cut(s) | 2535 |
| PleI | GAGTC | 9 cut(s) | 35, 207, 264, 304, 841, 1562, 2005, 2263, 3802 |
| PpsI | GAGTC | 9 cut(s) | 35, 207, 264, 304, 841, 1562, 2005, 2263, 3802 |
| PscI | ACATGT | 1 cut(s) | 3670 |
| Psp1406I | AACGTT | 1 cut(s) | 3247 |
| Psp6I | CCWGG | 4 cut(s) | 755, 1396, 3439, 3578 |
| PspFI | CCCAGC | 3 cut(s) | 566, 737, 3849 |
| PspGI | CCWGG | 4 cut(s) | 755, 1396, 3439, 3578 |
| PspXI | VCTCGAGB | 1 cut(s) | 966 |
| PstI | CTGCAG | 5 cut(s) | 1305, 1381, 2260, 3319, 3731 |
| PstNI | CAGNNNCTG | 1 cut(s) | 806 |
| PsuI | RGATCY | 6 cut(s) | 107, 1411, 2758, 2938, 3466, 3493 |
| RruI | TCGCGA | 1 cut(s) | 2768 |
| RsaI | GTAC | 7 cut(s) | 187, 796, 942, 1291, 2596, 2641, 3262 |
| RsaNI | GTAC | 7 cut(s) | 186, 795, 941, 1290, 2595, 2640, 3261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1265 |
| SapI | GCTCTTC | 1 cut(s) | 3808 |
| SchI | GAGTC | 9 cut(s) | 35, 208, 265, 304, 842, 1562, 2006, 2263, 3803 |
| ScrFI | CCNGG | 8 cut(s) | 510, 757, 1239, 1398, 1521, 2537, 3441, 3580 |
| SduI | GDGCHC | 6 cut(s) | 92, 683, 880, 2518, 3455, 3619 |
| SfcI | CTRYAG | 8 cut(s) | 707, 1301, 1377, 1820, 2256, 2676, 3315, 3727 |
| Sfr274I | CTCGAG | 1 cut(s) | 966 |
| SinI | GGWCC | 6 cut(s) | 1585, 1657, 2112, 2222, 2665, 3161 |
| SlaI | CTCGAG | 1 cut(s) | 966 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1265 |
| SmlI | CTYRAG | 6 cut(s) | 775, 966, 1082, 1124, 2458, 3739 |
| SmoI | CTYRAG | 6 cut(s) | 775, 966, 1082, 1124, 2458, 3739 |
| SpeI | ACTAGT | 1 cut(s) | 3626 |
| SspI | AATATT | 2 cut(s) | 3026, 3409 |
| StyD4I | CCNGG | 8 cut(s) | 508, 755, 1237, 1396, 1519, 2535, 3439, 3578 |
| StyI | CCWWGG | 7 cut(s) | 243, 828, 1758, 2273, 2294, 2661, 3428 |
| TaaI | ACNGT | 8 cut(s) | 53, 699, 1429, 1472, 1735, 2500, 3419, 3749 |
| TaiI | ACGT | 6 cut(s) | 2046, 2088, 2634, 2675, 2836, 3250 |
| TaqI | TCGA | 9 cut(s) | 308, 491, 668, 967, 1147, 1264, 1924, 2063, 3792 |
| TatI | WGTACW | 2 cut(s) | 794, 1289 |
| TauI | GCSGC | 9 cut(s) | 302, 350, 353, 356, 359, 442, 706, 720, 1488 |
| TfiI | GAWTC | 9 cut(s) | 722, 839, 1763, 2078, 3655, 3698, 3707, 3841, 3910 |
| TscAI | CASTG | 5 cut(s) | 1193, 3151, 3624, 3709, 3922 |
| TseFI | GTSAC | 5 cut(s) | 761, 2068, 2105, 2834, 3764 |
| Tsp45I | GTSAC | 5 cut(s) | 761, 2068, 2105, 2834, 3764 |
| TspGWI | ACGGA | 4 cut(s) | 854, 1602, 2271, 2789 |
| TspRI | CASTG | 5 cut(s) | 1193, 3151, 3624, 3709, 3922 |
| Vha464I | CTTAAG | 1 cut(s) | 775 |
| VneI | GTGCAC | 2 cut(s) | 876, 3615 |
| VpaK11BI | GGWCC | 6 cut(s) | 1585, 1657, 2112, 2222, 2665, 3161 |
| XbaI | TCTAGA | 1 cut(s) | 2620 |
| XceI | RCATGY | 3 cut(s) | 691, 2137, 3674 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 581 |
| XhoI | CTCGAG | 1 cut(s) | 966 |
| XmaJI | CCTAGG | 1 cut(s) | 2273 |
| XmiI | GTMKAC | 2 cut(s) | 326, 2191 |
| ZraI | GACGTC | 1 cut(s) | 2673 |