Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223356.1

Orthogroup ID

OG0006892

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 744

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223356.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 682 bp

tgagcagttgaaggcttcagaacacaggagagtgtcttctgatattgatcagactactgtgaaacctcccgagccttctgccaaggattctcatgaacccaagcatggacacaaagcttcttgggggtggggatatcctcctagtggatctgatgacacttctataatttgtcgcatttgtgaggatgaggttccaacttcaaatgtggaagaccattcaagaatttgtgcaattgctgatcgatgtgatcagaaaggtctaagtgtcaatgagcgtcttgtcagaatatccgaaactcttgaaaagatgatggagtccttcactcaaaaggacatccagcatggcataggaagtccagatgttgcaaaaatatcaaattcgagtgtgactgaagaatccgacggtctctctccaaaactcagtgattggtcccatagaggctctgaggaaatgcttgattgttttcctgaagctgataattcatctttcatggatgacctgaagggtttgccttccatgtcatgtagaactcgttttgggcccaagtctgatcaaggaatgacaacatcatctgcaggtagcatgacgccgaggtctcctttattgacaccaaaggccagtcagattgacttgctcctggcaggcaaggcttctttttctgagcaagatgatcttcctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

227

Amino Acids

24.84

Weight (kDa)

4.94

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17850
fragaria_vesca	FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560
malus_domestica	MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1
prunus_persica	Prupe.5G235400_v2.0.a1
pyrus_communis	pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940
rosa_chinensis	RchiOBHm_Chr7g0178091
rosa_laevigata	RLG00000005472
rosa_multiflora	Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275190
rosa_rugosa	Rorug06G0413400 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900
rosa_wichuraiana	Rw7G001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	2 cut(s)	223, 377
AcuI	CTGAAG	3 cut(s)	412, 490, 522
AcyI	GRCGYC	1 cut(s)	588
AfiI	CCNNNNNNNGG	2 cut(s)	105, 144
AgsI	TTSAA	4 cut(s)	11, 202, 220, 303
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	2 cut(s)	117, 474
AluI	AGCT	2 cut(s)	117, 474
Alw26I	GTCTC	2 cut(s)	411, 601
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	2 cut(s)	540, 616
ApaI	GGGCCC	1 cut(s)	544
ApoI	RAATTY	2 cut(s)	223, 377
AspS9I	GGNCC	3 cut(s)	430, 540, 541
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	28, 217
BccI	CCATC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	3 cut(s)	47, 248, 551
BcoDI	GTCTC	2 cut(s)	411, 601
BfaI	CTAG	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	430, 540, 541
BmiI	GGNNCC	3 cut(s)	193, 432, 542
BmrFI	CCNGG	1 cut(s)	639
BpiI	GAAGAC	2 cut(s)	28, 217
Bsa29I	ATCGAT	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	2 cut(s)	411, 601
BsaJI	CCNNGG	2 cut(s)	82, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 144
Bse1I	ACTGG	1 cut(s)	619
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	639
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	82, 591
BseGI	GGATG	3 cut(s)	191, 334, 500
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	105, 144
BseMII	CTCAG	3 cut(s)	434, 436, 652
BseNI	ACTGG	1 cut(s)	619
BseSI	GKGCMC	1 cut(s)	544
BshFI	GGCC	2 cut(s)	542, 618
BshVI	ATCGAT	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	105, 144
BsmAI	GTCTC	2 cut(s)	411, 601
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	542, 618
Bso31I	GGTCTC	2 cut(s)	411, 601
BsoBI	CYCGRG	1 cut(s)	69
Bsp120I	GGGCCC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
BspANI	GGCC	2 cut(s)	542, 618
BspCNI	CTCAG	3 cut(s)	433, 437, 653
BspDI	ATCGAT	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	193, 432, 542
BspMAI	CTGCAG	1 cut(s)	578
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	411, 601
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	82, 591
BssMI	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	59, 405
BstACI	GRCGYC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	644
BstDEI	CTNAG	5 cut(s)	261, 420, 445, 661, 679
BstF5I	GGATG	3 cut(s)	191, 334, 500
BstKTI	GATC	6 cut(s)	50, 150, 242, 251, 554, 674
BstMAI	GTCTC	2 cut(s)	411, 601
BstMBI	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	648
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	28, 217
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	542, 618
BsuTUI	ATCGAT	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	191, 334, 500
BtsIMutI	CAGTG	1 cut(s)	428
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	644
CciI	TCATGA	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	430, 540, 541
ClaI	ATCGAT	1 cut(s)	242
CseI	GACGC	2 cut(s)	264, 596
CviAII	CATG	7 cut(s)	93, 105, 342, 491, 518, 523, 584
CviJI	RGCY	8 cut(s)	15, 74, 117, 442, 474, 542, 618, 651
CviKI_1	RGCY	8 cut(s)	15, 74, 117, 442, 474, 542, 618, 651
DdeI	CTNAG	5 cut(s)	261, 420, 445, 661, 679
DpnI	GATC	6 cut(s)	49, 149, 241, 250, 553, 673
DpnII	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	544
Eco31I	GGTCTC	2 cut(s)	411, 601
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	3 cut(s)	412, 490, 522
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	7 cut(s)	96, 108, 345, 494, 521, 526, 587
FalI	AAGNNNNNCTT	1 cut(s)	658
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	92, 104, 341, 490, 517, 522, 583
FbaI	TGATCA	3 cut(s)	47, 248, 551
FokI	GGATG	3 cut(s)	198, 321, 507
FriOI	GRGCYC	1 cut(s)	544
FspBI	CTAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	542, 618
HgaI	GACGC	2 cut(s)	264, 596
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	96, 108, 345, 494, 521, 526, 587
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	3 cut(s)	87, 315, 396
Hpy188III	TCNNGA	6 cut(s)	69, 93, 220, 300, 357, 468
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	5 cut(s)	5, 85, 329, 497, 523
HpyCH4III	ACNGT	2 cut(s)	59, 405
HpyCH4V	TGCA	3 cut(s)	231, 366, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	648
HpyF3I	CTNAG	5 cut(s)	261, 420, 445, 661, 679
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	7 cut(s)	96, 108, 345, 494, 521, 526, 587
Ksp22I	TGATCA	3 cut(s)	47, 248, 551
Kzo9I	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
LmnI	GCTCC	1 cut(s)	640
MaeI	CTAG	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	6 cut(s)	49, 149, 241, 250, 553, 673
MboI	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
MboII	GAAGA	4 cut(s)	28, 222, 405, 666
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	166, 223, 232, 377, 479
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	219, 424
MnlI	CCTC	7 cut(s)	76, 148, 176, 182, 432, 440, 586
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	1 cut(s)	648
NdeII	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
NlaIII	CATG	7 cut(s)	96, 108, 345, 494, 521, 526, 587
NlaIV	GGNNCC	3 cut(s)	193, 432, 542
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	386
PagI	TCATGA	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	87, 396
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	3 cut(s)	193, 432, 542
PspOMI	GGGCCC	1 cut(s)	540
PspPI	GGNCC	3 cut(s)	430, 540, 541
PstI	CTGCAG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	147
Sau3AI	GATC	6 cut(s)	47, 147, 239, 248, 551, 671
Sau96I	GGNCC	3 cut(s)	430, 540, 541
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	8 cut(s)	68, 119, 193, 260, 476, 502, 581, 597
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	430
Sse9I	AATT	5 cut(s)	166, 223, 232, 377, 479
SspMI	CTAG	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	59, 405
TaqI	TCGA	2 cut(s)	242, 381
TasI	AATT	5 cut(s)	166, 223, 232, 377, 479
TfiI	GAWTC	2 cut(s)	87, 396
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	109, 472, 479
TspRI	CASTG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	223, 377
XspI	CTAG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.