Protein kinase domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17850 |
| fragaria_vesca | FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 |
| malus_domestica | MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1 |
| prunus_persica | Prupe.5G235400_v2.0.a1 |
| pyrus_communis | pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940 |
| rosa_chinensis | RchiOBHm_Chr7g0178091 |
| rosa_laevigata | RLG00000005472 |
| rosa_multiflora | Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00275190 |
| rosa_rugosa | Rorug06G0413400 Rorug06G0413500 Rorug06G0413500 |
| rosa_samantha | Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900 |
| rosa_wichuraiana | Rw7G001000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2260 |
| AatII | GACGTC | 1 cut(s) | 1198 |
| Acc36I | ACCTGC | 2 cut(s) | 1525, 2234 |
| Acc65I | GGTACC | 1 cut(s) | 3424 |
| AccB1I | GGYRCC | 3 cut(s) | 494, 3262, 3424 |
| AccII | CGCG | 2 cut(s) | 676, 2883 |
| AclWI | GGATC | 8 cut(s) | 102, 1656, 1822, 2512, 2751, 2776, 3476, 3878 |
| AcoI | YGGCCR | 2 cut(s) | 1299, 3076 |
| AcyI | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| AfaI | GTAC | 8 cut(s) | 1216, 1264, 1311, 2581, 2626, 2930, 3247, 3426 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 497, 1772, 1811, 2380, 2770, 3174, 3175, 3567 |
| AflII | CTTAAG | 2 cut(s) | 1220, 3706 |
| AflIII | ACRYGT | 1 cut(s) | 3658 |
| AgeI | ACCGGT | 1 cut(s) | 1312 |
| AjnI | CCWGG | 3 cut(s) | 1265, 2304, 3566 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3327, 3359, 3397, 3429 |
| Alw21I | GWGCWC | 1 cut(s) | 853 |
| Alw44I | GTGCAC | 1 cut(s) | 849 |
| AlwI | GGATC | 8 cut(s) | 102, 1656, 1822, 2512, 2751, 2776, 3476, 3878 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 779 |
| Ama87I | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| AoxI | GGCC | 9 cut(s) | 298, 413, 488, 1299, 2207, 2283, 3076, 3416, 3763 |
| ApaI | GGGCCC | 1 cut(s) | 2211 |
| ApaLI | GTGCAC | 1 cut(s) | 849 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 120, 152 |
| AsiGI | ACCGGT | 1 cut(s) | 1312 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1598 |
| Asp718I | GGTACC | 1 cut(s) | 3424 |
| AspA2I | CCTAGG | 1 cut(s) | 2258 |
| AspLEI | GCGC | 4 cut(s) | 208, 265, 497, 667 |
| AspS9I | GGNCC | 9 cut(s) | 413, 489, 1576, 2097, 2207, 2208, 2650, 2761, 3146 |
| AsuC2I | CCSGG | 3 cut(s) | 492, 1212, 2522 |
| AsuHPI | GGTGA | 2 cut(s) | 512, 3616 |
| AvaI | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| AvaII | GGWCC | 5 cut(s) | 1576, 2097, 2650, 2761, 3146 |
| AvrII | CCTAGG | 1 cut(s) | 2258 |
| BaeGI | GKGCMC | 3 cut(s) | 853, 2211, 2503 |
| BalI | TGGCCA | 1 cut(s) | 3078 |
| BanI | GGYRCC | 3 cut(s) | 494, 3262, 3424 |
| BanII | GRGCYC | 1 cut(s) | 2211 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 619, 651 |
| BauI | CACGAG | 1 cut(s) | 2973 |
| BbsI | GAAGAC | 3 cut(s) | 1695, 1884, 2445 |
| Bbv12I | GWGCWC | 1 cut(s) | 853 |
| BccI | CCATC | 7 cut(s) | 53, 1612, 1972, 2896, 3068, 3598, 3895 |
| BceAI | ACGGC | 3 cut(s) | 119, 161, 655 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 683, 717, 1727, 1761 |
| BciT130I | CCWGG | 3 cut(s) | 1267, 2306, 3568 |
| BciVI | GTATCC | 2 cut(s) | 1399, 3550 |
| BclI | TGATCA | 4 cut(s) | 1714, 1915, 2218, 3463 |
| BcnI | CCSGG | 3 cut(s) | 492, 1212, 2522 |
| BfmI | CTRYAG | 4 cut(s) | 1371, 2241, 2661, 3300 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BfrI | CTTAAG | 2 cut(s) | 1220, 3706 |
| BfuAI | ACCTGC | 2 cut(s) | 1525, 2234 |
| BfuI | GTATCC | 2 cut(s) | 1399, 3550 |
| BglII | AGATCT | 1 cut(s) | 3454 |
| BlnI | CCTAGG | 1 cut(s) | 2258 |
| BlpI | GCTNAGC | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 6 cut(s) | 492, 1212, 1267, 2306, 2522, 3568 |
| Bme18I | GGWCC | 5 cut(s) | 1576, 2097, 2650, 2761, 3146 |
| BmeT110I | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| BmgT120I | GGNCC | 9 cut(s) | 413, 489, 1576, 2097, 2207, 2208, 2650, 2761, 3146 |
| BmrFI | CCNGG | 6 cut(s) | 492, 1212, 1267, 2306, 2522, 3568 |
| BmrI | ACTGGG | 1 cut(s) | 3562 |
| BmuI | ACTGGG | 1 cut(s) | 3562 |
| BpiI | GAAGAC | 3 cut(s) | 1695, 1884, 2445 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3770, 3802 |
| BpmI | CTGGAG | 3 cut(s) | 762, 1164, 1593 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 292 |
| BpuEI | CTTGAG | 2 cut(s) | 769, 2464 |
| BpuMI | CCSGG | 3 cut(s) | 492, 1212, 2522 |
| Bsa29I | ATCGAT | 1 cut(s) | 1909 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1074, 1713 |
| BsaHI | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| BsaI | GGTCTC | 4 cut(s) | 636, 2078, 2268, 3122 |
| BsaJI | CCNNGG | 9 cut(s) | 240, 730, 854, 938, 1302, 1749, 2258, 3413, 3419 |
| BsaWI | WCCGGW | 2 cut(s) | 1312, 3265 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 307, 337, 3260, 3290 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 497, 1772, 1811, 2380, 2770, 3174, 3175, 3567 |
| Bse118I | RCCGGY | 3 cut(s) | 349, 497, 1312 |
| Bse1I | ACTGG | 8 cut(s) | 628, 1088, 1610, 2286, 3557, 3615, 3627, 3690 |
| Bse3DI | GCAATG | 2 cut(s) | 1137, 3612 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1074, 1713 |
| BseBI | CCWGG | 3 cut(s) | 1267, 2306, 3568 |
| BseCI | ATCGAT | 1 cut(s) | 1909 |
| BseDI | CCNNGG | 9 cut(s) | 240, 730, 854, 938, 1302, 1749, 2258, 3413, 3419 |
| BseJI | GATNNNNATC | 2 cut(s) | 1074, 1713 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 497, 1772, 1811, 2380, 2770, 3174, 3175, 3567 |
| BseMI | GCAATG | 2 cut(s) | 1137, 3612 |
| BseMII | CTCAG | 9 cut(s) | 293, 536, 2101, 2103, 2319, 2360, 3195, 3389, 3503 |
| BseNI | ACTGG | 8 cut(s) | 628, 1088, 1610, 2286, 3557, 3615, 3627, 3690 |
| BseRI | GAGGAG | 5 cut(s) | 16, 34, 2592, 2934, 3522 |
| BseSI | GKGCMC | 3 cut(s) | 853, 2211, 2503 |
| BseYI | CCCAGC | 3 cut(s) | 585, 710, 3834 |
| BsgI | GTGCAG | 1 cut(s) | 531 |
| Bsh1236I | CGCG | 2 cut(s) | 676, 2883 |
| Bsh1285I | CGRYCG | 2 cut(s) | 83, 3236 |
| BshFI | GGCC | 9 cut(s) | 300, 415, 490, 1301, 2209, 2285, 3078, 3418, 3765 |
| BshNI | GGYRCC | 3 cut(s) | 494, 3262, 3424 |
| BshTI | ACCGGT | 1 cut(s) | 1312 |
| BshVI | ATCGAT | 1 cut(s) | 1909 |
| BsiEI | CGRYCG | 2 cut(s) | 83, 3236 |
| BsiHKAI | GWGCWC | 1 cut(s) | 853 |
| BsiHKCI | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| BsiSI | CCGG | 7 cut(s) | 350, 492, 498, 1211, 1313, 2521, 3266 |
| BslFI | GGGAC | 3 cut(s) | 235, 1589, 2083 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 497, 1772, 1811, 2380, 2770, 3174, 3175, 3567 |
| BsmBI | CGTCTC | 1 cut(s) | 384 |
| BsmFI | GGGAC | 3 cut(s) | 235, 1589, 2083 |
| BsmI | GAATGC | 2 cut(s) | 1245, 3348 |
| BsnI | GGCC | 9 cut(s) | 300, 415, 490, 1301, 2209, 2285, 3078, 3418, 3765 |
| Bso31I | GGTCTC | 4 cut(s) | 636, 2078, 2268, 3122 |
| BsoBI | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| Bsp120I | GGGCCC | 1 cut(s) | 2207 |
| Bsp1286I | GDGCHC | 3 cut(s) | 853, 2211, 2503 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 292 |
| BspANI | GGCC | 9 cut(s) | 300, 415, 490, 1301, 2209, 2285, 3078, 3418, 3765 |
| BspCNI | CTCAG | 9 cut(s) | 294, 537, 2100, 2104, 2320, 2359, 3196, 3388, 3502 |
| BspDI | ATCGAT | 1 cut(s) | 1909 |
| BspFNI | CGCG | 2 cut(s) | 676, 2883 |
| BspHI | TCATGA | 2 cut(s) | 1759, 3736 |
| BspMAI | CTGCAG | 3 cut(s) | 1375, 2245, 3304 |
| BspMI | ACCTGC | 2 cut(s) | 1525, 2234 |
| BspPI | GGATC | 8 cut(s) | 102, 1656, 1822, 2512, 2751, 2776, 3476, 3878 |
| BspT107I | GGYRCC | 3 cut(s) | 494, 3262, 3424 |
| BspTI | CTTAAG | 2 cut(s) | 1220, 3706 |
| BspTNI | GGTCTC | 4 cut(s) | 636, 2078, 2268, 3122 |
| BsrDI | GCAATG | 2 cut(s) | 1137, 3612 |
| BsrFI | RCCGGY | 3 cut(s) | 349, 497, 1312 |
| BsrI | ACTGG | 8 cut(s) | 628, 1088, 1610, 2286, 3557, 3615, 3627, 3690 |
| BssAI | RCCGGY | 3 cut(s) | 349, 497, 1312 |
| BssECI | CCNNGG | 9 cut(s) | 240, 730, 854, 938, 1302, 1749, 2258, 3413, 3419 |
| BssNI | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| BssSI | CACGAG | 1 cut(s) | 2973 |
| BssT1I | CCWWGG | 5 cut(s) | 240, 854, 1749, 2258, 3413 |
| Bst2BI | CACGAG | 1 cut(s) | 2973 |
| Bst2UI | CCWGG | 3 cut(s) | 1267, 2306, 3568 |
| Bst6I | CTCTTC | 3 cut(s) | 854, 1487, 1544 |
| BstACI | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| BstAFI | CTTAAG | 2 cut(s) | 1220, 3706 |
| BstC8I | GCNNGC | 9 cut(s) | 204, 298, 351, 663, 780, 2311, 2503, 3000, 3840 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2768 |
| BstFNI | CGCG | 2 cut(s) | 676, 2883 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 4 cut(s) | 208, 265, 497, 667 |
| BstMCI | CGRYCG | 2 cut(s) | 83, 3236 |
| BstNI | CCWGG | 3 cut(s) | 1267, 2306, 3568 |
| BstNSI | RCATGY | 3 cut(s) | 661, 3293, 3662 |
| BstSCI | CCNGG | 6 cut(s) | 490, 1210, 1265, 2304, 2520, 3566 |
| BstSFI | CTRYAG | 4 cut(s) | 1371, 2241, 2661, 3300 |
| BstSLI | GKGCMC | 3 cut(s) | 853, 2211, 2503 |
| BstUI | CGCG | 2 cut(s) | 676, 2883 |
| BstV2I | GAAGAC | 3 cut(s) | 1695, 1884, 2445 |
| BstX2I | RGATCY | 5 cut(s) | 107, 1814, 2743, 3454, 3481 |
| BstYI | RGATCY | 5 cut(s) | 107, 1814, 2743, 3454, 3481 |
| Bsu15I | ATCGAT | 1 cut(s) | 1909 |
| BsuI | GTATCC | 2 cut(s) | 1399, 3550 |
| BsuRI | GGCC | 9 cut(s) | 300, 415, 490, 1301, 2209, 2285, 3078, 3418, 3765 |
| BsuTUI | ATCGAT | 1 cut(s) | 1909 |
| BtgZI | GCGATG | 2 cut(s) | 3876, 3881 |
| BtsI | GCAGTG | 1 cut(s) | 3907 |
| BtsIMutI | CAGTG | 6 cut(s) | 1166, 2095, 3129, 3607, 3697, 3907 |
| BveI | ACCTGC | 2 cut(s) | 1525, 2234 |
| Cac8I | GCNNGC | 9 cut(s) | 204, 298, 351, 663, 780, 2311, 2503, 3000, 3840 |
| CaiI | CAGNNNCTG | 1 cut(s) | 779 |
| CciI | TCATGA | 2 cut(s) | 1759, 3736 |
| CfoI | GCGC | 4 cut(s) | 208, 265, 497, 667 |
| Cfr10I | RCCGGY | 3 cut(s) | 349, 497, 1312 |
| Cfr13I | GGNCC | 9 cut(s) | 413, 489, 1576, 2097, 2207, 2208, 2650, 2761, 3146 |
| ClaI | ATCGAT | 1 cut(s) | 1909 |
| CseI | GACGC | 3 cut(s) | 245, 1931, 2263 |
| CsiI | ACCWGGT | 1 cut(s) | 1265 |
| Csp6I | GTAC | 8 cut(s) | 1215, 1263, 1310, 2580, 2625, 2929, 3246, 3425 |
| CspAI | ACCGGT | 1 cut(s) | 1312 |
| CviQI | GTAC | 8 cut(s) | 1215, 1263, 1310, 2580, 2625, 2929, 3246, 3425 |
| DinI | GGCGCC | 1 cut(s) | 496 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2260 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2260 |
| EaeI | YGGCCR | 2 cut(s) | 1299, 3076 |
| Eam1104I | CTCTTC | 3 cut(s) | 854, 1487, 1544 |
| EarI | CTCTTC | 3 cut(s) | 854, 1487, 1544 |
| EciI | GGCGGA | 3 cut(s) | 121, 160, 2789 |
| Eco130I | CCWWGG | 5 cut(s) | 240, 854, 1749, 2258, 3413 |
| Eco147I | AGGCCT | 1 cut(s) | 3765 |
| Eco24I | GRGCYC | 1 cut(s) | 2211 |
| Eco31I | GGTCTC | 4 cut(s) | 636, 2078, 2268, 3122 |
| Eco32I | GATATC | 4 cut(s) | 723, 1802, 2832, 3547 |
| Eco47I | GGWCC | 5 cut(s) | 1576, 2097, 2650, 2761, 3146 |
| Eco88I | CYCGRG | 5 cut(s) | 383, 729, 939, 1736, 3420 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2768 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2761 |
| EcoRI | GAATTC | 3 cut(s) | 1338, 1345, 1383 |
| EcoRII | CCWGG | 3 cut(s) | 1265, 2304, 3566 |
| EcoRV | GATATC | 4 cut(s) | 723, 1802, 2832, 3547 |
| EcoT14I | CCWWGG | 5 cut(s) | 240, 854, 1749, 2258, 3413 |
| EcoT38I | GRGCYC | 1 cut(s) | 2211 |
| EgeI | GGCGCC | 1 cut(s) | 496 |
| EheI | GGCGCC | 1 cut(s) | 496 |
| ErhI | CCWWGG | 5 cut(s) | 240, 854, 1749, 2258, 3413 |
| Esp3I | CGTCTC | 1 cut(s) | 384 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 275, 307, 2325, 2357, 2982, 3014 |
| FaqI | GGGAC | 3 cut(s) | 235, 1589, 2083 |
| FauI | CCCGC | 1 cut(s) | 212 |
| FauNDI | CATATG | 1 cut(s) | 784 |
| FbaI | TGATCA | 4 cut(s) | 1714, 1915, 2218, 3463 |
| FriOI | GRGCYC | 1 cut(s) | 2211 |
| GlaI | GCGC | 4 cut(s) | 207, 264, 496, 666 |
| GsaI | CCCAGC | 3 cut(s) | 589, 714, 3838 |
| GsuI | CTGGAG | 3 cut(s) | 762, 1164, 1593 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 9 cut(s) | 300, 415, 490, 1301, 2209, 2285, 3078, 3418, 3765 |
| HapII | CCGG | 7 cut(s) | 350, 492, 498, 1211, 1313, 2521, 3266 |
| HgaI | GACGC | 3 cut(s) | 245, 1931, 2263 |
| HhaI | GCGC | 4 cut(s) | 208, 265, 497, 667 |
| Hin1I | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| Hin6I | GCGC | 4 cut(s) | 206, 263, 495, 665 |
| HinP1I | GCGC | 4 cut(s) | 206, 263, 495, 665 |
| HincII | GTYRAC | 4 cut(s) | 257, 621, 3090, 3751 |
| HindII | GTYRAC | 4 cut(s) | 257, 621, 3090, 3751 |
| HindIII | AAGCTT | 2 cut(s) | 430, 1782 |
| HpaII | CCGG | 7 cut(s) | 350, 492, 498, 1211, 1313, 2521, 3266 |
| HphI | GGTGA | 2 cut(s) | 512, 3616 |
| Hpy166II | GTNNAC | 8 cut(s) | 257, 621, 851, 1012, 1217, 3090, 3248, 3751 |
| Hpy8I | GTNNAC | 8 cut(s) | 257, 621, 851, 1012, 1217, 3090, 3248, 3751 |
| Hpy99I | CGWCG | 6 cut(s) | 313, 316, 319, 322, 676, 2072 |
| HpyCH4IV | ACGT | 2 cut(s) | 954, 1195 |
| HpySE526I | ACGT | 2 cut(s) | 954, 1195 |
| Hsp92I | GRCGYC | 4 cut(s) | 237, 495, 1195, 2255 |
| HspAI | GCGC | 4 cut(s) | 206, 263, 495, 665 |
| KasI | GGCGCC | 1 cut(s) | 494 |
| KpnI | GGTACC | 1 cut(s) | 3428 |
| KroI | GCCGGC | 1 cut(s) | 349 |
| KroNI | GCCGGC | 1 cut(s) | 351 |
| Ksp22I | TGATCA | 4 cut(s) | 1714, 1915, 2218, 3463 |
| MabI | ACCWGGT | 1 cut(s) | 1265 |
| MaeII | ACGT | 2 cut(s) | 954, 1195 |
| MaeIII | GTNAC | 7 cut(s) | 500, 571, 1423, 1507, 2053, 3617, 3632 |
| MfeI | CAATTG | 1 cut(s) | 1899 |
| MflI | RGATCY | 5 cut(s) | 107, 1814, 2743, 3454, 3481 |
| MhlI | GDGCHC | 3 cut(s) | 853, 2211, 2503 |
| MlsI | TGGCCA | 1 cut(s) | 3078 |
| MluNI | TGGCCA | 1 cut(s) | 3078 |
| Mly113I | GGCGCC | 1 cut(s) | 495 |
| MlyI | GAGTC | 9 cut(s) | 35, 140, 316, 550, 753, 815, 1991, 3448, 3788 |
| MmeI | TCCRAC | 5 cut(s) | 72, 117, 1594, 1886, 2091 |
| Mox20I | TGGCCA | 1 cut(s) | 3078 |
| MroNI | GCCGGC | 1 cut(s) | 349 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1598 |
| MscI | TGGCCA | 1 cut(s) | 3078 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1238, 3900 |
| Msp20I | TGGCCA | 1 cut(s) | 3078 |
| MspA1I | CMGCKG | 2 cut(s) | 418, 3152 |
| MspCI | CTTAAG | 2 cut(s) | 1220, 3706 |
| MspI | CCGG | 7 cut(s) | 350, 492, 498, 1211, 1313, 2521, 3266 |
| MspR9I | CCNGG | 6 cut(s) | 492, 1212, 1267, 2306, 2522, 3568 |
| MunI | CAATTG | 1 cut(s) | 1899 |
| Mva1269I | GAATGC | 2 cut(s) | 1245, 3348 |
| MvaI | CCWGG | 3 cut(s) | 1267, 2306, 3568 |
| MvnI | CGCG | 2 cut(s) | 676, 2883 |
| NaeI | GCCGGC | 1 cut(s) | 351 |
| NarI | GGCGCC | 1 cut(s) | 495 |
| NciI | CCSGG | 3 cut(s) | 492, 1212, 2522 |
| NdeI | CATATG | 1 cut(s) | 784 |
| NgoMIV | GCCGGC | 1 cut(s) | 349 |
| NmeAIII | GCCGAG | 3 cut(s) | 66, 440, 1327 |
| NmuCI | GTSAC | 3 cut(s) | 500, 571, 2053 |
| NspI | RCATGY | 3 cut(s) | 661, 3293, 3662 |
| PagI | TCATGA | 2 cut(s) | 1759, 3736 |
| PceI | AGGCCT | 1 cut(s) | 3765 |
| PciI | ACATGT | 1 cut(s) | 3658 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 314, 317, 323 |
| PctI | GAATGC | 2 cut(s) | 1245, 3348 |
| PdiI | GCCGGC | 1 cut(s) | 351 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1598 |
| PfeI | GAWTC | 9 cut(s) | 695, 812, 976, 1559, 1754, 2063, 3643, 3686, 3826 |
| PfoI | TCCNGGA | 1 cut(s) | 2520 |
| PinAI | ACCGGT | 1 cut(s) | 1312 |
| Ple19I | CGATCG | 1 cut(s) | 83 |
| PleI | GAGTC | 9 cut(s) | 35, 140, 316, 549, 752, 814, 1990, 3447, 3787 |
| PluTI | GGCGCC | 1 cut(s) | 498 |
| PpsI | GAGTC | 9 cut(s) | 35, 140, 316, 549, 752, 814, 1990, 3447, 3787 |
| PpuMI | RGGWCCY | 1 cut(s) | 2761 |
| PscI | ACATGT | 1 cut(s) | 3658 |
| Psp5II | RGGWCCY | 1 cut(s) | 2761 |
| Psp6I | CCWGG | 3 cut(s) | 1265, 2304, 3566 |
| PspFI | CCCAGC | 3 cut(s) | 585, 710, 3834 |
| PspGI | CCWGG | 3 cut(s) | 1265, 2304, 3566 |
| PspOMI | GGGCCC | 1 cut(s) | 2207 |
| PspPI | GGNCC | 9 cut(s) | 413, 489, 1576, 2097, 2207, 2208, 2650, 2761, 3146 |
| PspPPI | RGGWCCY | 1 cut(s) | 2761 |
| PstI | CTGCAG | 3 cut(s) | 1375, 2245, 3304 |
| PstNI | CAGNNNCTG | 1 cut(s) | 779 |
| PsuI | RGATCY | 5 cut(s) | 107, 1814, 2743, 3454, 3481 |
| PvuI | CGATCG | 1 cut(s) | 83 |
| RsaI | GTAC | 8 cut(s) | 1216, 1264, 1311, 2581, 2626, 2930, 3247, 3426 |
| RsaNI | GTAC | 8 cut(s) | 1215, 1263, 1310, 2580, 2625, 2929, 3246, 3425 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1238, 3900 |
| Sau96I | GGNCC | 9 cut(s) | 413, 489, 1576, 2097, 2207, 2208, 2650, 2761, 3146 |
| SchI | GAGTC | 9 cut(s) | 35, 140, 316, 550, 753, 815, 1991, 3448, 3788 |
| ScrFI | CCNGG | 6 cut(s) | 492, 1212, 1267, 2306, 2522, 3568 |
| SduI | GDGCHC | 3 cut(s) | 853, 2211, 2503 |
| SexAI | ACCWGGT | 1 cut(s) | 1265 |
| SfcI | CTRYAG | 4 cut(s) | 1371, 2241, 2661, 3300 |
| SfoI | GGCGCC | 1 cut(s) | 496 |
| SgrAI | CRCCGGYG | 1 cut(s) | 497 |
| SinI | GGWCC | 5 cut(s) | 1576, 2097, 2650, 2761, 3146 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1238, 3900 |
| SmlI | CTYRAG | 4 cut(s) | 748, 1220, 2443, 3706 |
| SmoI | CTYRAG | 4 cut(s) | 748, 1220, 2443, 3706 |
| SseBI | AGGCCT | 1 cut(s) | 3765 |
| SspDI | GGCGCC | 1 cut(s) | 494 |
| SspI | AATATT | 2 cut(s) | 966, 3011 |
| StuI | AGGCCT | 1 cut(s) | 3765 |
| StyD4I | CCNGG | 6 cut(s) | 490, 1210, 1265, 2304, 2520, 3566 |
| StyI | CCWWGG | 5 cut(s) | 240, 854, 1749, 2258, 3413 |
| TaiI | ACGT | 2 cut(s) | 957, 1198 |
| TaqI | TCGA | 6 cut(s) | 308, 916, 1120, 1547, 1909, 2048 |
| TaqII | GACCGA | 2 cut(s) | 1593, 2667 |
| TatI | WGTACW | 1 cut(s) | 2928 |
| TfiI | GAWTC | 9 cut(s) | 695, 812, 976, 1559, 1754, 2063, 3643, 3686, 3826 |
| TscAI | CASTG | 6 cut(s) | 1166, 2095, 3136, 3607, 3697, 3907 |
| TseFI | GTSAC | 3 cut(s) | 500, 571, 2053 |
| Tsp45I | GTSAC | 3 cut(s) | 500, 571, 2053 |
| TspGWI | ACGGA | 1 cut(s) | 2774 |
| TspRI | CASTG | 6 cut(s) | 1166, 2095, 3136, 3607, 3697, 3907 |
| Vha464I | CTTAAG | 2 cut(s) | 1220, 3706 |
| VneI | GTGCAC | 1 cut(s) | 849 |
| VpaK11BI | GGWCC | 5 cut(s) | 1576, 2097, 2650, 2761, 3146 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2768 |
| XceI | RCATGY | 3 cut(s) | 661, 3293, 3662 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1289 |
| XmaJI | CCTAGG | 1 cut(s) | 2258 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1598 |
| ZraI | GACGTC | 1 cut(s) | 1196 |