Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006892

Physical Location & Seq

Genomic Coordinates Reverse (-)

55433706 .. 55434616

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGGGCAACGACCTTGACCTGTGGATTCCAAGGGGAGCTGATGTCGAAGCAGATGATGTTCCGGAGTATGGTGAGTACTTTTTTTGGGTTTCGAAGCTTCAGGGGTTTATGCTAACTGTATTGGGTGGAAGATCAAGGCCAGCAACATCAGGAACTGCTAGTTCAAGGCCTGTACAAACTTCTCAAGCATCCAGCAAGGCTGCAAACCCAACTAGAACCTCTCAAAGAATTAAAGAAAACTCAGATTATGGGGATATTAAGCTCAATAGGCCTAGTTGGGTTGAGAGGGAAACTGATAATCAAGAATTGGAGGGAAACTTTGGTTCATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

4.76

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17850
fragaria_vesca	FvH4_5g17560 FvH4_5g17560 FvH4_5g17560 FvH4_5g17560
malus_domestica	MD06G1231400.v1.1 MD06G1231500.v1.1 MD14G1238200.v1.1
prunus_persica	Prupe.5G235400_v2.0.a1
pyrus_communis	pycom06g20530 pycom06g20540 pycom14g19930 pycom14g19940
rosa_chinensis	RchiOBHm_Chr7g0178091
rosa_laevigata	RLG00000005472
rosa_multiflora	Rmu_co8223356.1_g000001 Rmu_sc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275190
rosa_rugosa	Rorug06G0413400 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh7AG012700 Rh7BG012600 Rh7CG012600 Rh7DG012900
rosa_wichuraiana	Rw7G001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	80, 177
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	168
AluBI	AGCT	3 cut(s)	41, 100, 265
AluI	AGCT	3 cut(s)	41, 100, 265
AlwNI	CAGNNNCTG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	3 cut(s)	140, 170, 272
ApeKI	GCWGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	190
BfaI	CTAG	3 cut(s)	162, 216, 276
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	80
BmsI	GCATC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	142, 172, 274
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	3 cut(s)	142, 172, 274
Bsp119I	TTCGAA	1 cut(s)	95
Bsp13I	TCCGGA	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	142, 172, 274
BspCNI	CTCAG	1 cut(s)	257
BspEI	TCCGGA	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	7, 144
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	142, 172, 274
BtsCI	GGATG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	7, 144
CaiI	CAGNNNCTG	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	79, 176
CviJI	RGCY	7 cut(s)	41, 100, 142, 172, 203, 265, 274
CviKI_1	RGCY	7 cut(s)	41, 100, 142, 172, 203, 265, 274
CviQI	GTAC	2 cut(s)	79, 176
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	32
Eco147I	AGGCCT	2 cut(s)	172, 274
Eco57I	CTGAAG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaiI	YATR	3 cut(s)	72, 113, 252
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	162, 216, 276
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	142, 172, 274
HapII	CCGG	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	65, 153, 305
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	7 cut(s)	35, 78, 89, 138, 156, 186, 208
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	3 cut(s)	162, 216, 276
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	144
MluCI	AATT	2 cut(s)	231, 308
MnlI	CCTC	3 cut(s)	232, 282, 307
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	2 cut(s)	234, 261
MslI	CAYNNNNRTG	1 cut(s)	334
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	95
PceI	AGGCCT	2 cut(s)	172, 274
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	80, 177
RsaNI	GTAC	2 cut(s)	79, 176
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	234, 261
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	80
SetI	ASST	6 cut(s)	18, 24, 43, 102, 224, 267
SfaNI	GCATC	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	231, 308
SseBI	AGGCCT	2 cut(s)	172, 274
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	162, 216, 276
StuI	AGGCCT	2 cut(s)	172, 274
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	48, 95
TasI	AATT	2 cut(s)	231, 308
TatI	WGTACW	2 cut(s)	78, 175
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	234, 261
Tru9I	TTAA	2 cut(s)	234, 261
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	318
XspI	CTAG	3 cut(s)	162, 216, 276
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.