FvH4_5g18590

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011305
Physical Location & Seq
Reverse (-)
10687552 .. 10690888
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18590.t3

Sequence Viewer

Length: 858 bp
ATGGGCAGCCAAGTAGCAGCGGAAGAAGTAGAAGAGAAGGAAAGACTGGTAAAAATGGGATCGTACGGAGGAATGGTCCGGCAGCTGAGGGCCGCCGCAAAAGAAGAAGAGTCATGTGCTGCTACGGCCGCTGAGGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCTGCTCAAGCTCGATTCCTGTGGCCATTCTCTCTCTATTTCCCAGTCCCCTTCCTCCCTGAGCACGCCTGGGGTTACTGGTTCTGTCATGTGGGATAGTGGAGTTGTATTGGGGAAGTTTCTAGAGCATGCTGTGGACTCGGAGTTGTTACTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCTGGCTGTGGTTTAGTCGGCTGCATTGCAGCCCTTTTAGGTGGTCAAGTTGTCCTCACCGATCTCTTTGATAGATTGAGGCTACTAAAGAAGAACATTGATGCCAATCTGAGACATGGAGATGTGCGAGGTTCAGCAAAAGTGATGGAATTGCAATGGGGAGATGATCCTGACCCGGAACTGATAGAACCTCGACCTGATTTTGTTCTAGGATCTGATGTAATCTATAGTGAGGGAGCAGTATTGGATCTGCTGTCTACCTTGCGGCAACTCTGTGGGTCTGAGACAACAGTGTTCTTGGCTGGAGAACTTCGAAATGATGCTGTCCTTGAATACTTCTTAGATTGCGCAATGGAGGATTTCATAATTGGACGTTTGGAGCACAGTCAGTGGCATCCAGACTATTGTAGCAGTCGTGTTGTTTTGTATGTTCTGGTCAAGAAAGTGATGGTGGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

286

Amino Acids

30.97

Weight (kDa)

4.72

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 97 - 199 2.2e-21 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 745
AccI GTMKAC 1 cut(s) 653
AciI CCGC 5 cut(s) 20, 93, 96, 129, 661
AclWI GGATC 4 cut(s) 67, 557, 616, 651
AcoI YGGCCR 2 cut(s) 126, 235
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 3 cut(s) 371, 389, 728
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 2 cut(s) 85, 223
AluI AGCT 2 cut(s) 85, 223
Alw21I GWGCWC 2 cut(s) 278, 780
Alw26I GTCTC 2 cut(s) 502, 674
AlwI GGATC 4 cut(s) 67, 557, 616, 651
AoxI GGCC 3 cut(s) 90, 126, 235
ApeKI GCWGC 6 cut(s) 6, 17, 82, 119, 417, 425
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 2 cut(s) 76, 90
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 445
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 237
BanII GRGCYC 1 cut(s) 398
Bbv12I GWGCWC 2 cut(s) 278, 780
BbvCI CCTCAGC 2 cut(s) 86, 132
BbvI GCAGC 6 cut(s) 18, 29, 94, 106, 404, 437
BccI CCATC 2 cut(s) 535, 838
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 502, 674
BfaI CTAG 2 cut(s) 335, 605
BfmI CTRYAG 1 cut(s) 622
Bme1390I CCNGG 2 cut(s) 282, 572
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 90
BmrFI CCNGG 2 cut(s) 282, 572
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 3 cut(s) 487, 706, 799
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 720
Bpu10I CCTNAGC 3 cut(s) 86, 132, 272
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 281
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 131, 161
Bse1I ACTGG 3 cut(s) 51, 256, 295
Bse3DI GCAATG 3 cut(s) 420, 557, 753
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 790
BseJI GATNNNNATC 1 cut(s) 501
BseMI GCAATG 3 cut(s) 420, 557, 753
BseMII CTCAG 5 cut(s) 77, 123, 263, 497, 669
BseNI ACTGG 3 cut(s) 51, 256, 295
BseRI GAGGAG 2 cut(s) 149, 152
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 6 cut(s) 18, 29, 94, 106, 404, 437
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 92, 128, 237
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 2 cut(s) 278, 780
BsiSI CCGG 2 cut(s) 79, 572
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 502, 674
BsmFI GGGAC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 3 cut(s) 92, 128, 237
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 278, 398, 780
Bsp143I GATC 6 cut(s) 59, 457, 562, 608, 643, 850
BspACI CCGC 5 cut(s) 20, 93, 96, 129, 661
BspANI GGCC 3 cut(s) 92, 128, 237
BspCNI CTCAG 5 cut(s) 78, 124, 264, 498, 670
BspPI GGATC 4 cut(s) 67, 557, 616, 651
BspT104I TTCGAA 1 cut(s) 709
BsrDI GCAATG 3 cut(s) 420, 557, 753
BsrI ACTGG 3 cut(s) 51, 256, 295
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 6 cut(s) 59, 457, 562, 608, 643, 850
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 688, 782
Bst6I CTCTTC 3 cut(s) 27, 102, 216
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 2 cut(s) 278, 342
BstDEI CTNAG 6 cut(s) 86, 132, 272, 506, 678, 736
BstF5I GGATG 1 cut(s) 790
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 6 cut(s) 62, 460, 565, 611, 646, 853
BstMAI GTCTC 2 cut(s) 502, 674
BstMBI GATC 6 cut(s) 59, 457, 562, 608, 643, 850
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 125, 128, 197
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 280, 570
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 6 cut(s) 18, 29, 94, 106, 404, 437
BstX2I RGATCY 3 cut(s) 608, 643, 850
BstYI RGATCY 3 cut(s) 608, 643, 850
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 3 cut(s) 92, 128, 237
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 693, 791
Cac8I GCNNGC 2 cut(s) 278, 342
CfoI GCGC 1 cut(s) 746
Cfr13I GGNCC 2 cut(s) 76, 90
Csp6I GTAC 1 cut(s) 64
CviAII CATG 4 cut(s) 114, 301, 341, 512
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 6 cut(s) 86, 132, 272, 506, 678, 736
DpnI GATC 6 cut(s) 61, 459, 564, 610, 645, 852
DpnII GATC 6 cut(s) 59, 457, 562, 608, 643, 850
EaeI YGGCCR 2 cut(s) 126, 235
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 27, 102, 216
EarI CTCTTC 3 cut(s) 27, 102, 216
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 398
FaeI CATG 4 cut(s) 117, 304, 344, 515
FaiI YATR 7 cut(s) 115, 302, 342, 513, 624, 761, 825
FaqI GGGAC 1 cut(s) 244
FatI CATG 4 cut(s) 113, 300, 340, 511
FblI GTMKAC 1 cut(s) 653
FokI GGATG 1 cut(s) 777
FriOI GRGCYC 1 cut(s) 398
FspBI CTAG 2 cut(s) 335, 605
FspI TGCGCA 1 cut(s) 745
GlaI GCGC 1 cut(s) 745
GsuI CTGGAG 1 cut(s) 720
HaeIII GGCC 3 cut(s) 92, 128, 237
HapII CCGG 2 cut(s) 79, 572
HhaI GCGC 1 cut(s) 746
Hin1II CATG 4 cut(s) 117, 304, 344, 515
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HinfI GANTC 4 cut(s) 110, 159, 227, 350
HpaII CCGG 2 cut(s) 79, 572
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 349, 654
Hpy188I TCNGA 4 cut(s) 355, 507, 613, 679
Hpy188III TCNNGA 4 cut(s) 335, 566, 794, 835
Hpy8I GTNNAC 2 cut(s) 349, 654
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 31, 273
HpyCH4III ACNGT 2 cut(s) 688, 782
HpyCH4IV ACGT 1 cut(s) 769
HpyCH4V TGCA 3 cut(s) 420, 425, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 128, 197
HpyF3I CTNAG 6 cut(s) 86, 132, 272, 506, 678, 736
HpySE526I ACGT 1 cut(s) 769
Hsp92II CATG 4 cut(s) 117, 304, 344, 515
HspAI GCGC 1 cut(s) 744
Kzo9I GATC 6 cut(s) 59, 457, 562, 608, 643, 850
LmnI GCTCC 2 cut(s) 632, 775
Lsp1109I GCAGC 6 cut(s) 18, 29, 94, 106, 404, 437
LweI GCATC 3 cut(s) 487, 706, 799
MaeI CTAG 2 cut(s) 335, 605
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 2 cut(s) 286, 360
MalI GATC 6 cut(s) 61, 459, 564, 610, 645, 852
MboI GATC 6 cut(s) 59, 457, 562, 608, 643, 850
MboII GAAGA 6 cut(s) 35, 44, 116, 119, 203, 499
MflI RGATCY 3 cut(s) 608, 643, 850
MhlI GDGCHC 3 cut(s) 278, 398, 780
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 3 cut(s) 389, 545, 762
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 119, 344
MmeI TCCRAC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 3 cut(s) 20, 85, 131
MspI CCGG 2 cut(s) 79, 572
MspR9I CCNGG 2 cut(s) 282, 572
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 125, 128, 197
NciI CCSGG 1 cut(s) 572
NdeII GATC 6 cut(s) 59, 457, 562, 608, 643, 850
NlaIII CATG 4 cut(s) 117, 304, 344, 515
NsbI TGCGCA 1 cut(s) 745
NspI RCATGY 1 cut(s) 344
NspV TTCGAA 1 cut(s) 709
PaeI GCATGC 1 cut(s) 344
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 159, 227
Pfl23II CGTACG 1 cut(s) 63
PleI GAGTC 2 cut(s) 118, 344
PpsI GAGTC 2 cut(s) 118, 344
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 2 cut(s) 76, 90
PsuI RGATCY 3 cut(s) 608, 643, 850
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 516
Sau3AI GATC 6 cut(s) 59, 457, 562, 608, 643, 850
Sau96I GGNCC 2 cut(s) 76, 90
SchI GAGTC 2 cut(s) 119, 344
ScrFI CCNGG 2 cut(s) 282, 572
SduI GDGCHC 3 cut(s) 278, 398, 780
SetI ASST 8 cut(s) 87, 225, 439, 529, 589, 595, 659, 772
SfaNI GCATC 3 cut(s) 487, 706, 799
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SphI GCATGC 1 cut(s) 344
Sse9I AATT 3 cut(s) 389, 545, 762
SsiI CCGC 5 cut(s) 20, 93, 96, 129, 661
SspMI CTAG 2 cut(s) 335, 605
StyD4I CCNGG 2 cut(s) 280, 570
TaaI ACNGT 2 cut(s) 688, 782
TaiI ACGT 1 cut(s) 772
TaqI TCGA 3 cut(s) 225, 589, 709
TasI AATT 3 cut(s) 389, 545, 762
TauI GCSGC 4 cut(s) 95, 98, 131, 664
TfiI GAWTC 2 cut(s) 159, 227
TscAI CASTG 2 cut(s) 693, 791
TseI GCWGC 6 cut(s) 6, 17, 82, 119, 417, 425
TspDTI ATGAA 1 cut(s) 748
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 693, 791
VpaK11BI GGWCC 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 653
XspI CTAG 2 cut(s) 335, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.