Rh7BG001700

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011305
Physical Location & Seq
Forward (+)
131332 .. 134072
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG001700.1

Sequence Viewer

Length: 852 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCAAAAGCAGAAGAAGATGAAGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTGGACTCAGAGTTGTTACTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCACCTGATTTCGTTCTAGGATCTGATGTAATCTATAGTGAGGGAGCAGTATTGGATCTGCTGTCTACCTTGCGGCAACTCTGCGGGTCTGAAACAACAGTCTTCTTGGCTGGAGAACTTCGAAATGATGCTGTCCTTGAATATTTCTTAGAGTGCGCAATGGAGGATTTCATAATTGGGCGTTTGGAGCAGAGTCAGTGGCATCCAGACTTTTGTAGCAGTCGTGTTGTTTTGTATGTTTTGGTCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

283

Amino Acids

30.86

Weight (kDa)

4.42

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 100 - 248 4.1e-33 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 754
AccB1I GGYRCC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 662
AciI CCGC 3 cut(s) 84, 670, 681
AclWI GGATC 4 cut(s) 58, 566, 625, 660
AcoI YGGCCR 2 cut(s) 3, 244
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 4 cut(s) 224, 380, 398, 737
AjnI CCWGG 2 cut(s) 289, 579
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 204, 236
AluBI AGCT 3 cut(s) 76, 140, 437
AluI AGCT 3 cut(s) 76, 140, 437
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 4 cut(s) 58, 566, 625, 660
AoxI GGCC 3 cut(s) 3, 81, 244
ApeKI GCWGC 5 cut(s) 73, 128, 137, 426, 434
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 718
BalI TGGCCA 2 cut(s) 5, 246
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 2 cut(s) 123, 691
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 5 cut(s) 85, 115, 149, 413, 446
BccI CCATC 1 cut(s) 544
BceAI ACGGC 2 cut(s) 150, 290
BciT130I CCWGG 2 cut(s) 291, 581
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 631
BisI GCNGC 7 cut(s) 74, 84, 129, 138, 427, 435, 671
BlsI GCNGC 7 cut(s) 75, 85, 130, 139, 428, 436, 672
Bme1390I CCNGG 2 cut(s) 291, 581
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 304, 406
BmrFI CCNGG 2 cut(s) 291, 581
BmsI GCATC 3 cut(s) 496, 715, 808
BpiI GAAGAC 2 cut(s) 123, 691
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 2 cut(s) 77, 281
Bpu14I TTCGAA 1 cut(s) 718
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 3 cut(s) 6, 265, 304
Bse3DI GCAATG 2 cut(s) 429, 762
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 291, 581
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 532, 799
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 2 cut(s) 429, 762
BseMII CTCAG 4 cut(s) 91, 272, 375, 506
BseNI ACTGG 3 cut(s) 6, 265, 304
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 5 cut(s) 85, 115, 149, 413, 446
BshFI GGCC 3 cut(s) 5, 83, 246
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 2 cut(s) 253, 329
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 2 cut(s) 253, 329
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 3 cut(s) 5, 83, 246
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 287, 407
Bsp143I GATC 5 cut(s) 50, 466, 571, 617, 652
BspACI CCGC 3 cut(s) 84, 670, 681
BspANI GGCC 3 cut(s) 5, 83, 246
BspCNI CTCAG 4 cut(s) 90, 273, 374, 507
BspLI GGNNCC 2 cut(s) 304, 406
BspPI GGATC 4 cut(s) 58, 566, 625, 660
BspT104I TTCGAA 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 429, 762
BsrI ACTGG 3 cut(s) 6, 265, 304
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 5 cut(s) 50, 466, 571, 617, 652
Bst2UI CCWGG 2 cut(s) 291, 581
Bst4CI ACNGT 2 cut(s) 320, 697
Bst6I CTCTTC 3 cut(s) 18, 138, 225
BstBI TTCGAA 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 6 cut(s) 77, 281, 343, 361, 515, 745
BstF5I GGATG 2 cut(s) 532, 799
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 5 cut(s) 53, 469, 574, 620, 655
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 5 cut(s) 50, 466, 571, 617, 652
BstMWI GCNNNNNNNGC 5 cut(s) 89, 134, 137, 206, 784
BstNI CCWGG 2 cut(s) 291, 581
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 289, 579
BstSFI CTRYAG 1 cut(s) 631
BstV1I GCAGC 5 cut(s) 85, 115, 149, 413, 446
BstV2I GAAGAC 2 cut(s) 123, 691
BstX2I RGATCY 2 cut(s) 617, 652
BstYI RGATCY 2 cut(s) 617, 652
BsuRI GGCC 3 cut(s) 5, 83, 246
BtsCI GGATG 2 cut(s) 532, 799
BtsIMutI CAGTG 4 cut(s) 13, 325, 462, 800
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 123, 310, 350, 521
DdeI CTNAG 6 cut(s) 77, 281, 343, 361, 515, 745
DpnI GATC 5 cut(s) 52, 468, 573, 619, 654
DpnII GATC 5 cut(s) 50, 466, 571, 617, 652
EaeI YGGCCR 2 cut(s) 3, 244
Eam1104I CTCTTC 3 cut(s) 18, 138, 225
EarI CTCTTC 3 cut(s) 18, 138, 225
Eco24I GRGCYC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 289, 579
EcoT38I GRGCYC 1 cut(s) 407
FaeI CATG 4 cut(s) 126, 313, 353, 524
FaiI YATR 8 cut(s) 57, 124, 311, 351, 522, 633, 770, 834
FaqI GGGAC 2 cut(s) 253, 329
FatI CATG 4 cut(s) 122, 309, 349, 520
FauI CCCGC 1 cut(s) 674
FblI GTMKAC 1 cut(s) 662
Fnu4HI GCNGC 7 cut(s) 74, 84, 129, 138, 427, 435, 671
FokI GGATG 2 cut(s) 539, 786
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 7 cut(s) 74, 84, 129, 138, 427, 435, 671
FspBI CTAG 1 cut(s) 614
FspI TGCGCA 1 cut(s) 754
GlaI GCGC 1 cut(s) 754
GluI GCNGC 7 cut(s) 74, 84, 129, 138, 427, 435, 671
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 5, 83, 246
HapII CCGG 1 cut(s) 408
HhaI GCGC 1 cut(s) 755
Hin1II CATG 4 cut(s) 126, 313, 353, 524
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 5 cut(s) 119, 168, 236, 359, 790
HpaII CCGG 1 cut(s) 408
Hpy166II GTNNAC 2 cut(s) 358, 663
Hpy188I TCNGA 4 cut(s) 364, 516, 622, 688
Hpy188III TCNNGA 4 cut(s) 473, 575, 803, 844
Hpy8I GTNNAC 2 cut(s) 358, 663
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 22, 282
HpyCH4III ACNGT 2 cut(s) 320, 697
HpyCH4V TGCA 2 cut(s) 429, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 134, 137, 206, 784
HpyF3I CTNAG 6 cut(s) 77, 281, 343, 361, 515, 745
Hsp92II CATG 4 cut(s) 126, 313, 353, 524
HspAI GCGC 1 cut(s) 753
Kzo9I GATC 5 cut(s) 50, 466, 571, 617, 652
LmnI GCTCC 3 cut(s) 410, 641, 784
Lsp1109I GCAGC 5 cut(s) 85, 115, 149, 413, 446
LweI GCATC 3 cut(s) 496, 715, 808
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 295, 369
MalI GATC 5 cut(s) 52, 468, 573, 619, 654
MboI GATC 5 cut(s) 50, 466, 571, 617, 652
MflI RGATCY 2 cut(s) 617, 652
MhlI GDGCHC 2 cut(s) 287, 407
MlsI TGGCCA 2 cut(s) 5, 246
MluCI AATT 3 cut(s) 398, 554, 771
MluNI TGGCCA 2 cut(s) 5, 246
MlyI GAGTC 3 cut(s) 113, 353, 799
MmeI TCCRAC 1 cut(s) 196
Mox20I TGGCCA 2 cut(s) 5, 246
MscI TGGCCA 2 cut(s) 5, 246
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 2 cut(s) 5, 246
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 291, 581
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 2 cut(s) 291, 581
MwoI GCNNNNNNNGC 5 cut(s) 89, 134, 137, 206, 784
NdeII GATC 5 cut(s) 50, 466, 571, 617, 652
NlaIII CATG 4 cut(s) 126, 313, 353, 524
NlaIV GGNNCC 2 cut(s) 304, 406
NsbI TGCGCA 1 cut(s) 754
NspI RCATGY 1 cut(s) 353
NspV TTCGAA 1 cut(s) 718
PaeI GCATGC 1 cut(s) 353
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 168, 236
PkrI GCNGC 7 cut(s) 75, 85, 130, 139, 428, 436, 672
PleI GAGTC 3 cut(s) 113, 353, 798
PpsI GAGTC 3 cut(s) 113, 353, 798
Psp6I CCWGG 2 cut(s) 289, 579
PspGI CCWGG 2 cut(s) 289, 579
PspN4I GGNNCC 2 cut(s) 304, 406
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 617, 652
PvuII CAGCTG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 525
SatI GCNGC 7 cut(s) 74, 84, 129, 138, 427, 435, 671
Sau3AI GATC 5 cut(s) 50, 466, 571, 617, 652
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 3 cut(s) 113, 353, 799
ScrFI CCNGG 2 cut(s) 291, 581
SduI GDGCHC 2 cut(s) 287, 407
SetI ASST 9 cut(s) 78, 142, 439, 448, 538, 582, 598, 604, 668
SfaNI GCATC 3 cut(s) 496, 715, 808
SfcI CTRYAG 1 cut(s) 631
SfuI TTCGAA 1 cut(s) 718
SmiMI CAYNNNNRTG 1 cut(s) 525
SphI GCATGC 1 cut(s) 353
Sse9I AATT 3 cut(s) 398, 554, 771
SsiI CCGC 3 cut(s) 84, 670, 681
SspI AATATT 1 cut(s) 740
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 289, 579
TaaI ACNGT 2 cut(s) 320, 697
TaqI TCGA 2 cut(s) 234, 718
TasI AATT 3 cut(s) 398, 554, 771
TauI GCSGC 2 cut(s) 86, 673
TfiI GAWTC 2 cut(s) 168, 236
TscAI CASTG 4 cut(s) 13, 325, 469, 800
TseI GCWGC 5 cut(s) 73, 128, 137, 426, 434
TspDTI ATGAA 2 cut(s) 117, 757
TspRI CASTG 4 cut(s) 13, 325, 469, 800
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 662
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.