Rw7G000100

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011305
Physical Location & Seq
Forward (+)
159257 .. 162491
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000100.1

Sequence Viewer

Length: 651 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCAAAAGGAGAAGAAGAAGAAGATGCAGATGAAGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTAGACTCAGAGTTGTTGCTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCACCTGATTTCGGTAATAACCGTTGGCTATATCTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

216

Amino Acids

23.44

Weight (kDa)

4.38

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 104 - 196 1.9e-21 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 84
AclWI GGATC 2 cut(s) 58, 578
AcoI YGGCCR 2 cut(s) 3, 256
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 324, 620
AgsI TTSAA 3 cut(s) 236, 392, 410
AjnI CCWGG 2 cut(s) 301, 591
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 216, 248
AluBI AGCT 3 cut(s) 76, 152, 449
AluI AGCT 3 cut(s) 76, 152, 449
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 2 cut(s) 58, 578
AoxI GGCC 3 cut(s) 3, 81, 256
ApeKI GCWGC 6 cut(s) 73, 140, 149, 385, 438, 446
AspS9I GGNCC 1 cut(s) 81
BalI TGGCCA 2 cut(s) 5, 258
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 6 cut(s) 85, 127, 161, 372, 425, 458
BccI CCATC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 162, 302
BciT130I CCWGG 2 cut(s) 303, 593
BcoDI GTCTC 1 cut(s) 523
BfmI CTRYAG 2 cut(s) 366, 647
BisI GCNGC 7 cut(s) 74, 84, 141, 150, 386, 439, 447
BlsI GCNGC 7 cut(s) 75, 85, 142, 151, 387, 440, 448
Bme1390I CCNGG 2 cut(s) 303, 593
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 316, 418
BmrFI CCNGG 2 cut(s) 303, 593
BmsI GCATC 2 cut(s) 97, 508
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 2 cut(s) 77, 293
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 620
Bse1I ACTGG 3 cut(s) 6, 277, 316
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 2 cut(s) 303, 593
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 324, 620
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 91, 284, 387, 518
BseNI ACTGG 3 cut(s) 6, 277, 316
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 6 cut(s) 85, 127, 161, 372, 425, 458
BshFI GGCC 3 cut(s) 5, 83, 258
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 420
BslFI GGGAC 2 cut(s) 265, 341
BslI CCNNNNNNNGG 2 cut(s) 324, 620
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 265, 341
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 5, 83, 258
Bsp1286I GDGCHC 2 cut(s) 299, 419
Bsp143I GATC 3 cut(s) 50, 478, 583
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 5, 83, 258
BspCNI CTCAG 4 cut(s) 90, 285, 386, 519
BspLI GGNNCC 2 cut(s) 316, 418
BspPI GGATC 2 cut(s) 58, 578
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 3 cut(s) 6, 277, 316
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 50, 478, 583
Bst2UI CCWGG 2 cut(s) 303, 593
Bst4CI ACNGT 2 cut(s) 332, 632
Bst6I CTCTTC 3 cut(s) 18, 150, 237
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 5 cut(s) 77, 293, 355, 373, 527
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 3 cut(s) 53, 481, 586
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 3 cut(s) 50, 478, 583
BstMWI GCNNNNNNNGC 3 cut(s) 146, 149, 218
BstNI CCWGG 2 cut(s) 303, 593
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 301, 591
BstSFI CTRYAG 2 cut(s) 366, 647
BstV1I GCAGC 6 cut(s) 85, 127, 161, 372, 425, 458
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 3 cut(s) 5, 83, 258
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 13, 337, 474
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 135, 322, 362, 533
DdeI CTNAG 5 cut(s) 77, 293, 355, 373, 527
DpnI GATC 3 cut(s) 52, 480, 585
DpnII GATC 3 cut(s) 50, 478, 583
EaeI YGGCCR 2 cut(s) 3, 256
Eam1104I CTCTTC 3 cut(s) 18, 150, 237
EarI CTCTTC 3 cut(s) 18, 150, 237
Eco24I GRGCYC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 301, 591
EcoT38I GRGCYC 1 cut(s) 419
FaeI CATG 4 cut(s) 138, 325, 365, 536
FaiI YATR 7 cut(s) 57, 136, 323, 363, 534, 640, 649
FaqI GGGAC 2 cut(s) 265, 341
FatI CATG 4 cut(s) 134, 321, 361, 532
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 7 cut(s) 74, 84, 141, 150, 386, 439, 447
FokI GGATG 1 cut(s) 551
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 7 cut(s) 74, 84, 141, 150, 386, 439, 447
GluI GCNGC 7 cut(s) 74, 84, 141, 150, 386, 439, 447
HaeIII GGCC 3 cut(s) 5, 83, 258
HapII CCGG 1 cut(s) 420
Hin1II CATG 4 cut(s) 138, 325, 365, 536
HinfI GANTC 4 cut(s) 131, 180, 248, 371
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 376, 528
Hpy188III TCNNGA 2 cut(s) 485, 587
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 22, 294
HpyCH4III ACNGT 2 cut(s) 332, 632
HpyCH4V TGCA 3 cut(s) 110, 441, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 149, 218
HpyF3I CTNAG 5 cut(s) 77, 293, 355, 373, 527
Hsp92II CATG 4 cut(s) 138, 325, 365, 536
Kzo9I GATC 3 cut(s) 50, 478, 583
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 6 cut(s) 85, 127, 161, 372, 425, 458
LweI GCATC 2 cut(s) 97, 508
MaeIII GTNAC 1 cut(s) 307
MalI GATC 3 cut(s) 52, 480, 585
MboI GATC 3 cut(s) 50, 478, 583
MhlI GDGCHC 2 cut(s) 299, 419
MlsI TGGCCA 2 cut(s) 5, 258
MluCI AATT 2 cut(s) 410, 566
MluNI TGGCCA 2 cut(s) 5, 258
MlyI GAGTC 2 cut(s) 125, 365
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 8 cut(s) 53, 151, 238, 298, 482, 489, 539, 618
Mox20I TGGCCA 2 cut(s) 5, 258
MscI TGGCCA 2 cut(s) 5, 258
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 2 cut(s) 5, 258
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 2 cut(s) 303, 593
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 303, 593
MwoI GCNNNNNNNGC 3 cut(s) 146, 149, 218
NdeII GATC 3 cut(s) 50, 478, 583
NlaIII CATG 4 cut(s) 138, 325, 365, 536
NlaIV GGNNCC 2 cut(s) 316, 418
NspI RCATGY 1 cut(s) 365
PaeI GCATGC 1 cut(s) 365
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 180, 248
PkrI GCNGC 7 cut(s) 75, 85, 142, 151, 387, 440, 448
PleI GAGTC 2 cut(s) 125, 365
PpsI GAGTC 2 cut(s) 125, 365
Psp6I CCWGG 2 cut(s) 301, 591
PspGI CCWGG 2 cut(s) 301, 591
PspN4I GGNNCC 2 cut(s) 316, 418
PspPI GGNCC 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 537
SatI GCNGC 7 cut(s) 74, 84, 141, 150, 386, 439, 447
Sau3AI GATC 3 cut(s) 50, 478, 583
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 125, 365
ScrFI CCNGG 2 cut(s) 303, 593
SduI GDGCHC 2 cut(s) 299, 419
SetI ASST 8 cut(s) 78, 154, 451, 460, 550, 594, 610, 616
SfaNI GCATC 2 cut(s) 97, 508
SfcI CTRYAG 2 cut(s) 366, 647
SmiMI CAYNNNNRTG 1 cut(s) 537
SphI GCATGC 1 cut(s) 365
Sse9I AATT 2 cut(s) 410, 566
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 301, 591
TaaI ACNGT 2 cut(s) 332, 632
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 410, 566
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 180, 248
TscAI CASTG 3 cut(s) 13, 337, 481
TseI GCWGC 6 cut(s) 73, 140, 149, 385, 438, 446
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 3 cut(s) 13, 337, 481
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.