Prupe.5G245300_v2.0.a1

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011305
Physical Location & Seq
Reverse (-)
18362337 .. 18366338
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G245300.1

Sequence Viewer

Length: 876 bp
ATGGCCACAGAAGAAATAGTATTGGAAGAAGAAAAAGAAGAAGAGAAGGAAAGAATGGTTACGTTGGGATCCTACAAAGGTATGGTTAGGCTGCTGAGGGTGAAAGCAGAACAAGAGGAGGAAGAAGAAGAAGAAGAATTGGATTCATTTGCTGCTACCGCAGCTTCAGAGGAGATAATGCTGCTGTGGGGAATGCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTTTCTCAGTCTTCTCTTCAACTGAAACTCGATGTCTGTGGTCACTCACTCGCCATTTTCCAGTCCCCTTCTTCTTTGAGCACACCTGGAGTAACTGGTGCTGTCATGTGGGACAGTGGAGTTATATTGGGGAAGTTTCTAGAGCATGCTTCGGACTCAGAGTTGCTACTTCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCTGGCTGTGGATTAGTCGGCTGCATTGCAGCTCTTCTAGGTGGTCAAGTTGTCCTCACAGATCTTCCTGATAGACTCAGACTACTGAGAAAGAATATTGAAGTCAATCTGAGACATGAAGATATGCGAGGTTCAGCAAAAGTGATGGAATTCATATGGGGAGATGATCCTGACCTGGAACTGACAGAACCTCCACCTGATGTTGTGCTAGGTTCTGATGTAATCTATAGCGAGGGAGCAGTTTTGGATTTGCTGTCTACACTGCGGCAACTCTGTGGAGGTGAAACAACAATCTTTTTGGCTGGAGAACTTCGAAATGATGCTGTCCTTGAATACTTCTTAGAGTGCGCAATGAAGGATTTTGTAATTGGGCGTTTGGACCAAAGACAATGGCATCCGGACTATTGCAGCAGTCGTGTTGTTTTGTATGTTCTCGTCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

4.54

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 778
AccI GTMKAC 1 cut(s) 686
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 2 cut(s) 159, 694
AclWI GGATC 3 cut(s) 63, 76, 590
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 150
AgsI TTSAA 5 cut(s) 248, 404, 422, 530, 761
AjnI CCWGG 2 cut(s) 313, 603
AluBI AGCT 2 cut(s) 164, 461
AluI AGCT 2 cut(s) 164, 461
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 3 cut(s) 63, 76, 590
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 7 cut(s) 91, 152, 161, 181, 450, 458, 837
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 2 cut(s) 112, 722
AsuII TTCGAA 1 cut(s) 742
AvaII GGWCC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 7 cut(s) 78, 139, 168, 173, 437, 470, 849
BccI CCATC 1 cut(s) 568
BciT130I CCWGG 2 cut(s) 315, 605
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 3 cut(s) 368, 467, 638
BfmI CTRYAG 1 cut(s) 655
BglII AGATCT 1 cut(s) 490
BisI GCNGC 8 cut(s) 92, 153, 162, 182, 451, 459, 695, 838
BlsI GCNGC 8 cut(s) 93, 154, 163, 183, 452, 460, 696, 839
Bme1390I CCNGG 2 cut(s) 315, 605
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 808
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 315, 605
BmsI GCATC 2 cut(s) 739, 832
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 2 cut(s) 336, 753
Bpu10I CCTNAGC 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 742
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bse1I ACTGG 2 cut(s) 289, 328
Bse3DI GCAATG 2 cut(s) 453, 786
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 2 cut(s) 315, 605
BseGI GGATG 1 cut(s) 823
BseMI GCAATG 2 cut(s) 453, 786
BseMII CTCAG 6 cut(s) 86, 248, 399, 506, 520, 530
BseNI ACTGG 2 cut(s) 289, 328
BseRI GAGGAG 2 cut(s) 131, 185
BseXI GCAGC 7 cut(s) 78, 139, 168, 173, 437, 470, 849
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 2 cut(s) 277, 353
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 2 cut(s) 277, 353
BsmI GAATGC 2 cut(s) 198, 224
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 311, 431
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 3 cut(s) 68, 490, 595
BspACI CCGC 2 cut(s) 159, 694
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 6 cut(s) 87, 247, 398, 507, 519, 531
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 3 cut(s) 63, 76, 590
BspQI GCTCTTC 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 742
BsrDI GCAATG 2 cut(s) 453, 786
BsrI ACTGG 2 cut(s) 289, 328
BssMI GATC 3 cut(s) 68, 490, 595
Bst2UI CCWGG 2 cut(s) 315, 605
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 3 cut(s) 36, 249, 468
BstBI TTCGAA 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 7 cut(s) 95, 234, 385, 506, 515, 539, 769
BstF5I GGATG 1 cut(s) 823
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 3 cut(s) 71, 493, 598
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 3 cut(s) 68, 490, 595
BstMWI GCNNNNNNNGC 2 cut(s) 158, 161
BstNI CCWGG 2 cut(s) 315, 605
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 313, 603
BstSFI CTRYAG 1 cut(s) 655
BstV1I GCAGC 7 cut(s) 78, 139, 168, 173, 437, 470, 849
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 68, 490
BstYI RGATCY 2 cut(s) 68, 490
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 823
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 2 cut(s) 349, 689
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 808
CviAII CATG 3 cut(s) 334, 374, 545
CviJI RGCY 9 cut(s) 5, 91, 164, 202, 429, 435, 450, 461, 731
CviKI_1 RGCY 9 cut(s) 5, 91, 164, 202, 429, 435, 450, 461, 731
DdeI CTNAG 7 cut(s) 95, 234, 385, 506, 515, 539, 769
DpnI GATC 3 cut(s) 70, 492, 597
DpnII GATC 3 cut(s) 68, 490, 595
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 36, 249, 468
EarI CTCTTC 3 cut(s) 36, 249, 468
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 313, 603
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 3 cut(s) 337, 377, 548
FaqI GGGAC 2 cut(s) 277, 353
FatI CATG 3 cut(s) 333, 373, 544
FauNDI CATATG 1 cut(s) 584
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 8 cut(s) 92, 153, 162, 182, 451, 459, 695, 838
FokI GGATG 1 cut(s) 810
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 8 cut(s) 92, 153, 162, 182, 451, 459, 695, 838
FspBI CTAG 3 cut(s) 368, 467, 638
FspI TGCGCA 1 cut(s) 778
GlaI GCGC 1 cut(s) 778
GluI GCNGC 8 cut(s) 92, 153, 162, 182, 451, 459, 695, 838
GsuI CTGGAG 2 cut(s) 336, 753
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 827
HhaI GCGC 1 cut(s) 779
Hin1II CATG 3 cut(s) 337, 377, 548
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HinfI GANTC 3 cut(s) 143, 383, 504
HpaII CCGG 1 cut(s) 827
HphI GGTGA 2 cut(s) 112, 722
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 6 cut(s) 169, 382, 388, 509, 540, 646
Hpy188III TCNNGA 5 cut(s) 368, 497, 599, 827, 868
Hpy8I GTNNAC 1 cut(s) 687
HpyAV CCTTC 3 cut(s) 40, 306, 778
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 196, 453, 458, 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 161
HpyF3I CTNAG 7 cut(s) 95, 234, 385, 506, 515, 539, 769
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 3 cut(s) 337, 377, 548
HspAI GCGC 1 cut(s) 777
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 3 cut(s) 68, 490, 595
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 7 cut(s) 78, 139, 168, 173, 437, 470, 849
LweI GCATC 2 cut(s) 739, 832
MaeI CTAG 3 cut(s) 368, 467, 638
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 58, 269, 319
MalI GATC 3 cut(s) 70, 492, 597
MboI GATC 3 cut(s) 68, 490, 595
MflI RGATCY 2 cut(s) 68, 490
MhlI GDGCHC 2 cut(s) 311, 431
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 137, 422, 578, 795
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 377, 498
MnlI CCTC 9 cut(s) 90, 109, 112, 163, 494, 551, 630, 655, 701
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 826
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 2 cut(s) 315, 605
Mva1269I GAATGC 2 cut(s) 198, 224
MvaI CCWGG 2 cut(s) 315, 605
MwoI GCNNNNNNNGC 2 cut(s) 158, 161
NdeI CATATG 1 cut(s) 584
NdeII GATC 3 cut(s) 68, 490, 595
NlaIII CATG 3 cut(s) 337, 377, 548
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 269
NsbI TGCGCA 1 cut(s) 778
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 1 cut(s) 742
PaeI GCATGC 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 468
PctI GAATGC 2 cut(s) 198, 224
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 8 cut(s) 93, 154, 163, 183, 452, 460, 696, 839
PleI GAGTC 2 cut(s) 377, 498
PpsI GAGTC 2 cut(s) 377, 498
Psp6I CCWGG 2 cut(s) 313, 603
PspGI CCWGG 2 cut(s) 313, 603
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 808
PsuI RGATCY 2 cut(s) 68, 490
SapI GCTCTTC 1 cut(s) 468
SatI GCNGC 8 cut(s) 92, 153, 162, 182, 451, 459, 695, 838
Sau3AI GATC 3 cut(s) 68, 490, 595
Sau96I GGNCC 1 cut(s) 808
SchI GAGTC 2 cut(s) 377, 498
ScrFI CCNGG 2 cut(s) 315, 605
SduI GDGCHC 2 cut(s) 311, 431
SfaNI GCATC 2 cut(s) 739, 832
SfcI CTRYAG 1 cut(s) 655
SfuI TTCGAA 1 cut(s) 742
SinI GGWCC 1 cut(s) 808
SphI GCATGC 1 cut(s) 377
Sse9I AATT 4 cut(s) 137, 422, 578, 795
SsiI CCGC 2 cut(s) 159, 694
SspI AATATT 1 cut(s) 526
SspMI CTAG 3 cut(s) 368, 467, 638
StyD4I CCNGG 2 cut(s) 313, 603
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 258, 742
TasI AATT 4 cut(s) 137, 422, 578, 795
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 2 cut(s) 349, 696
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 7 cut(s) 91, 152, 161, 181, 450, 458, 837
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 135, 561, 571, 797
TspRI CASTG 2 cut(s) 349, 696
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 686
XspI CTAG 3 cut(s) 368, 467, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.