RLG00000005573

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011305
Physical Location & Seq
Reverse (-)
68621733 .. 68624676
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005573

Sequence Viewer

Length: 639 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCAAAAGGAGAAGAAGATGAAGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCTGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTGGACTCAGAGTTGTTACTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCTGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCGCCTGATTTCGGTAATAACCATTGGCTATATCTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

213

Amino Acids

22.98

Weight (kDa)

4.46

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 100 - 192 1.8e-21 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 599
AclWI GGATC 2 cut(s) 58, 566
AcoI YGGCCR 2 cut(s) 3, 244
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 3 cut(s) 224, 380, 398
AjnI CCWGG 2 cut(s) 289, 579
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 204, 236
AluBI AGCT 3 cut(s) 76, 140, 437
AluI AGCT 3 cut(s) 76, 140, 437
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 2 cut(s) 58, 566
AoxI GGCC 3 cut(s) 3, 81, 244
ApeKI GCWGC 5 cut(s) 73, 128, 137, 426, 434
AspS9I GGNCC 1 cut(s) 81
BalI TGGCCA 2 cut(s) 5, 246
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 5 cut(s) 85, 115, 149, 413, 446
BccI CCATC 1 cut(s) 544
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 291, 581
BcoDI GTCTC 1 cut(s) 511
BfmI CTRYAG 1 cut(s) 635
BisI GCNGC 6 cut(s) 74, 84, 129, 138, 427, 435
BlsI GCNGC 6 cut(s) 75, 85, 130, 139, 428, 436
Bme1390I CCNGG 2 cut(s) 291, 581
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 291, 581
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 77, 281
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 3 cut(s) 6, 265, 304
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 291, 581
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 4 cut(s) 91, 272, 375, 506
BseNI ACTGG 3 cut(s) 6, 265, 304
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 5 cut(s) 85, 115, 149, 413, 446
BshFI GGCC 3 cut(s) 5, 83, 246
BsiHKAI GWGCWC 1 cut(s) 287
BslFI GGGAC 2 cut(s) 253, 329
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 2 cut(s) 253, 329
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 3 cut(s) 5, 83, 246
Bsp1286I GDGCHC 2 cut(s) 287, 407
Bsp143I GATC 3 cut(s) 50, 466, 571
BspACI CCGC 2 cut(s) 84, 599
BspANI GGCC 3 cut(s) 5, 83, 246
BspCNI CTCAG 4 cut(s) 90, 273, 374, 507
BspPI GGATC 2 cut(s) 58, 566
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 3 cut(s) 6, 265, 304
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 3 cut(s) 50, 466, 571
Bst2UI CCWGG 2 cut(s) 291, 581
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 3 cut(s) 18, 138, 225
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 5 cut(s) 77, 281, 343, 361, 515
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 53, 469, 574
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 3 cut(s) 50, 466, 571
BstMWI GCNNNNNNNGC 3 cut(s) 134, 137, 206
BstNI CCWGG 2 cut(s) 291, 581
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 289, 579
BstSFI CTRYAG 1 cut(s) 635
BstV1I GCAGC 5 cut(s) 85, 115, 149, 413, 446
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 3 cut(s) 5, 83, 246
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 13, 325, 462
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 123, 310, 350, 521
DdeI CTNAG 5 cut(s) 77, 281, 343, 361, 515
DpnI GATC 3 cut(s) 52, 468, 573
DpnII GATC 3 cut(s) 50, 466, 571
EaeI YGGCCR 2 cut(s) 3, 244
Eam1104I CTCTTC 3 cut(s) 18, 138, 225
EarI CTCTTC 3 cut(s) 18, 138, 225
EciI GGCGGA 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 289, 579
EcoT38I GRGCYC 1 cut(s) 407
FaeI CATG 4 cut(s) 126, 313, 353, 524
FaiI YATR 7 cut(s) 57, 124, 311, 351, 522, 628, 637
FaqI GGGAC 2 cut(s) 253, 329
FatI CATG 4 cut(s) 122, 309, 349, 520
Fnu4HI GCNGC 6 cut(s) 74, 84, 129, 138, 427, 435
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 6 cut(s) 74, 84, 129, 138, 427, 435
GluI GCNGC 6 cut(s) 74, 84, 129, 138, 427, 435
HaeIII GGCC 3 cut(s) 5, 83, 246
Hin1II CATG 4 cut(s) 126, 313, 353, 524
HinfI GANTC 4 cut(s) 119, 168, 236, 359
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 364, 516
Hpy188III TCNNGA 2 cut(s) 473, 575
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 22, 282
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 429, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 137, 206
HpyF3I CTNAG 5 cut(s) 77, 281, 343, 361, 515
Hsp92II CATG 4 cut(s) 126, 313, 353, 524
Kzo9I GATC 3 cut(s) 50, 466, 571
Lsp1109I GCAGC 5 cut(s) 85, 115, 149, 413, 446
LweI GCATC 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 295, 369
MalI GATC 3 cut(s) 52, 468, 573
MboI GATC 3 cut(s) 50, 466, 571
MhlI GDGCHC 2 cut(s) 287, 407
MlsI TGGCCA 2 cut(s) 5, 246
MluCI AATT 2 cut(s) 398, 554
MluNI TGGCCA 2 cut(s) 5, 246
MlyI GAGTC 2 cut(s) 113, 353
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 8 cut(s) 53, 139, 226, 286, 470, 477, 527, 606
Mox20I TGGCCA 2 cut(s) 5, 246
MscI TGGCCA 2 cut(s) 5, 246
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 2 cut(s) 5, 246
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 291, 581
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 2 cut(s) 291, 581
MwoI GCNNNNNNNGC 3 cut(s) 134, 137, 206
NdeII GATC 3 cut(s) 50, 466, 571
NlaIII CATG 4 cut(s) 126, 313, 353, 524
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 168, 236
PkrI GCNGC 6 cut(s) 75, 85, 130, 139, 428, 436
PleI GAGTC 2 cut(s) 113, 353
PpsI GAGTC 2 cut(s) 113, 353
Psp6I CCWGG 2 cut(s) 289, 579
PspGI CCWGG 2 cut(s) 289, 579
PspPI GGNCC 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 525
SatI GCNGC 6 cut(s) 74, 84, 129, 138, 427, 435
Sau3AI GATC 3 cut(s) 50, 466, 571
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 113, 353
ScrFI CCNGG 2 cut(s) 291, 581
SduI GDGCHC 2 cut(s) 287, 407
SetI ASST 7 cut(s) 78, 142, 439, 448, 538, 582, 598
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 525
SphI GCATGC 1 cut(s) 353
Sse9I AATT 2 cut(s) 398, 554
SsiI CCGC 2 cut(s) 84, 599
StyD4I CCNGG 2 cut(s) 289, 579
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 398, 554
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 168, 236
TscAI CASTG 3 cut(s) 13, 325, 469
TseI GCWGC 5 cut(s) 73, 128, 137, 426, 434
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 3 cut(s) 13, 325, 469
XceI RCATGY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.