Rh7DG001500

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011305
Physical Location & Seq
Forward (+)
167266 .. 175074
7809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG001500.1

Sequence Viewer

Length: 603 bp
ATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCAAAAGGAGAAGAAGATGAAGATGAAGATGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTTGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTGGACTCAGAGTTGTTGCTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCACCTGATTTCGGTAATAACCGTTGGCTATATCTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

200

Amino Acids

21.61

Weight (kDa)

4.38

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 88 - 180 1.5e-21 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 1 cut(s) 39
AclWI GGATC 2 cut(s) 13, 530
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 276, 572
AgsI TTSAA 3 cut(s) 188, 344, 362
AjnI CCWGG 2 cut(s) 253, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 31, 104, 401
AluI AGCT 3 cut(s) 31, 104, 401
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 2 cut(s) 13, 530
AoxI GGCC 2 cut(s) 36, 208
ApeKI GCWGC 6 cut(s) 28, 92, 101, 337, 390, 398
AspS9I GGNCC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 6 cut(s) 40, 79, 113, 324, 377, 410
BccI CCATC 1 cut(s) 508
BceAI ACGGC 2 cut(s) 114, 254
BciT130I CCWGG 2 cut(s) 255, 545
BcoDI GTCTC 1 cut(s) 475
BfmI CTRYAG 1 cut(s) 599
BisI GCNGC 7 cut(s) 29, 39, 93, 102, 338, 391, 399
BlsI GCNGC 7 cut(s) 30, 40, 94, 103, 339, 392, 400
Bme1390I CCNGG 2 cut(s) 255, 545
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 268, 370
BmrFI CCNGG 2 cut(s) 255, 545
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 32, 245
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 572
Bse1I ACTGG 2 cut(s) 229, 268
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 255, 545
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 276, 572
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 4 cut(s) 46, 236, 339, 470
BseNI ACTGG 2 cut(s) 229, 268
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 6 cut(s) 40, 79, 113, 324, 377, 410
BshFI GGCC 2 cut(s) 38, 210
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 2 cut(s) 217, 293
BslI CCNNNNNNNGG 2 cut(s) 276, 572
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 2 cut(s) 217, 293
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 2 cut(s) 38, 210
Bsp1286I GDGCHC 2 cut(s) 251, 371
Bsp143I GATC 3 cut(s) 5, 430, 535
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 38, 210
BspCNI CTCAG 4 cut(s) 45, 237, 338, 471
BspLI GGNNCC 2 cut(s) 268, 370
BspPI GGATC 2 cut(s) 13, 530
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 2 cut(s) 229, 268
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 5, 430, 535
Bst2UI CCWGG 2 cut(s) 255, 545
Bst4CI ACNGT 2 cut(s) 284, 584
Bst6I CTCTTC 2 cut(s) 102, 189
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 5 cut(s) 32, 245, 307, 325, 479
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 3 cut(s) 8, 433, 538
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 3 cut(s) 5, 430, 535
BstMWI GCNNNNNNNGC 3 cut(s) 98, 101, 170
BstNI CCWGG 2 cut(s) 255, 545
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 253, 543
BstSFI CTRYAG 1 cut(s) 599
BstV1I GCAGC 6 cut(s) 40, 79, 113, 324, 377, 410
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 38, 210
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 289, 426
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 4 cut(s) 87, 274, 314, 485
DdeI CTNAG 5 cut(s) 32, 245, 307, 325, 479
DpnI GATC 3 cut(s) 7, 432, 537
DpnII GATC 3 cut(s) 5, 430, 535
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 102, 189
EarI CTCTTC 2 cut(s) 102, 189
Eco24I GRGCYC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 253, 543
EcoT38I GRGCYC 1 cut(s) 371
FaeI CATG 4 cut(s) 90, 277, 317, 488
FaiI YATR 7 cut(s) 12, 88, 275, 315, 486, 592, 601
FaqI GGGAC 2 cut(s) 217, 293
FatI CATG 4 cut(s) 86, 273, 313, 484
Fnu4HI GCNGC 7 cut(s) 29, 39, 93, 102, 338, 391, 399
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 7 cut(s) 29, 39, 93, 102, 338, 391, 399
GluI GCNGC 7 cut(s) 29, 39, 93, 102, 338, 391, 399
HaeIII GGCC 2 cut(s) 38, 210
HapII CCGG 1 cut(s) 372
Hin1II CATG 4 cut(s) 90, 277, 317, 488
HinfI GANTC 4 cut(s) 83, 132, 200, 323
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 328, 480
Hpy188III TCNNGA 2 cut(s) 437, 539
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 284, 584
HpyCH4V TGCA 2 cut(s) 393, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 101, 170
HpyF3I CTNAG 5 cut(s) 32, 245, 307, 325, 479
Hsp92II CATG 4 cut(s) 90, 277, 317, 488
Kzo9I GATC 3 cut(s) 5, 430, 535
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 6 cut(s) 40, 79, 113, 324, 377, 410
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 7, 432, 537
MboI GATC 3 cut(s) 5, 430, 535
MhlI GDGCHC 2 cut(s) 251, 371
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 2 cut(s) 362, 518
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 2 cut(s) 77, 317
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 8 cut(s) 8, 103, 190, 250, 434, 441, 491, 570
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 255, 545
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 255, 545
MwoI GCNNNNNNNGC 3 cut(s) 98, 101, 170
NdeII GATC 3 cut(s) 5, 430, 535
NlaIII CATG 4 cut(s) 90, 277, 317, 488
NlaIV GGNNCC 2 cut(s) 268, 370
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 132, 200
PkrI GCNGC 7 cut(s) 30, 40, 94, 103, 339, 392, 400
PleI GAGTC 2 cut(s) 77, 317
PpsI GAGTC 2 cut(s) 77, 317
Psp6I CCWGG 2 cut(s) 253, 543
PspGI CCWGG 2 cut(s) 253, 543
PspN4I GGNNCC 2 cut(s) 268, 370
PspPI GGNCC 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 489
SatI GCNGC 7 cut(s) 29, 39, 93, 102, 338, 391, 399
Sau3AI GATC 3 cut(s) 5, 430, 535
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 2 cut(s) 77, 317
ScrFI CCNGG 2 cut(s) 255, 545
SduI GDGCHC 2 cut(s) 251, 371
SetI ASST 8 cut(s) 33, 106, 403, 412, 502, 546, 562, 568
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 489
SphI GCATGC 1 cut(s) 317
Sse9I AATT 2 cut(s) 362, 518
SsiI CCGC 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 253, 543
TaaI ACNGT 2 cut(s) 284, 584
TasI AATT 2 cut(s) 362, 518
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 132, 200
TscAI CASTG 2 cut(s) 289, 433
TseI GCWGC 6 cut(s) 28, 92, 101, 337, 390, 398
TspDTI ATGAA 3 cut(s) 72, 78, 84
TspRI CASTG 2 cut(s) 289, 433
XceI RCATGY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.