Rh7CG001200

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011305
Physical Location & Seq
Forward (+)
164497 .. 167171
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG001200.1

Sequence Viewer

Length: 858 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCACAAAAGGAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTGGACTCAGAGTTGTTGCTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTTGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCACCTGATTTCGTTCTAGGATCTGATGTAATCTATAGTGAGGGAGCAGTATTGGATCTGCTGTCTACCTTGCGGCAACTCTGCGGGTCTGAAACAACAGTCTTCTTGGCTGGAGAACTTCGAAATGATGCTGTCCTTGAATATTTCTTAGAGTGCGCAATGGAGGATTTCATAATTGGGCGTTTGGAGCAGAGTCAGTGGCATCCGGACTTTTGTAGCAGTCGTGTTGTTTTGTATGTTTTGGTCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

285

Amino Acids

31.14

Weight (kDa)

4.38

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 102 - 250 4.2e-33 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 760
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 668
AccIII TCCGGA 1 cut(s) 808
AciI CCGC 2 cut(s) 676, 687
AclWI GGATC 4 cut(s) 58, 572, 631, 666
AcoI YGGCCR 2 cut(s) 3, 250
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 4 cut(s) 230, 386, 404, 743
AjnI CCWGG 2 cut(s) 295, 585
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 210, 242
AluBI AGCT 3 cut(s) 76, 146, 443
AluI AGCT 3 cut(s) 76, 146, 443
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 4 cut(s) 58, 572, 631, 666
Aor13HI TCCGGA 1 cut(s) 808
AoxI GGCC 3 cut(s) 3, 81, 250
ApeKI GCWGC 6 cut(s) 73, 134, 143, 379, 432, 440
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 724
BalI TGGCCA 2 cut(s) 5, 252
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 2 cut(s) 129, 697
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 6 cut(s) 85, 121, 155, 366, 419, 452
BccI CCATC 1 cut(s) 550
BceAI ACGGC 2 cut(s) 156, 296
BciT130I CCWGG 2 cut(s) 297, 587
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 1 cut(s) 620
BfmI CTRYAG 1 cut(s) 637
BisI GCNGC 7 cut(s) 74, 135, 144, 380, 433, 441, 677
BlsI GCNGC 7 cut(s) 75, 136, 145, 381, 434, 442, 678
Bme1390I CCNGG 2 cut(s) 297, 587
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 310, 412
BmrFI CCNGG 2 cut(s) 297, 587
BmsI GCATC 3 cut(s) 502, 721, 814
BpiI GAAGAC 2 cut(s) 129, 697
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 2 cut(s) 77, 287
Bpu14I TTCGAA 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 808
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 3 cut(s) 6, 271, 310
Bse3DI GCAATG 2 cut(s) 435, 768
Bse8I GATNNNNATC 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 808
BseBI CCWGG 2 cut(s) 297, 587
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 2 cut(s) 538, 805
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMI GCAATG 2 cut(s) 435, 768
BseMII CTCAG 4 cut(s) 91, 278, 381, 512
BseNI ACTGG 3 cut(s) 6, 271, 310
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 6 cut(s) 85, 121, 155, 366, 419, 452
BshFI GGCC 3 cut(s) 5, 83, 252
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 2 cut(s) 414, 809
BslFI GGGAC 2 cut(s) 259, 335
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 259, 335
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 3 cut(s) 5, 83, 252
Bsp119I TTCGAA 1 cut(s) 724
Bsp1286I GDGCHC 2 cut(s) 293, 413
Bsp13I TCCGGA 1 cut(s) 808
Bsp143I GATC 5 cut(s) 50, 472, 577, 623, 658
BspACI CCGC 2 cut(s) 676, 687
BspANI GGCC 3 cut(s) 5, 83, 252
BspCNI CTCAG 4 cut(s) 90, 279, 380, 513
BspEI TCCGGA 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 310, 412
BspPI GGATC 4 cut(s) 58, 572, 631, 666
BspT104I TTCGAA 1 cut(s) 724
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 435, 768
BsrI ACTGG 3 cut(s) 6, 271, 310
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 5 cut(s) 50, 472, 577, 623, 658
Bst2UI CCWGG 2 cut(s) 297, 587
Bst4CI ACNGT 2 cut(s) 326, 703
Bst6I CTCTTC 3 cut(s) 18, 144, 231
BstBI TTCGAA 1 cut(s) 724
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 6 cut(s) 77, 287, 349, 367, 521, 751
BstF5I GGATG 2 cut(s) 538, 805
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 5 cut(s) 53, 475, 580, 626, 661
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 5 cut(s) 50, 472, 577, 623, 658
BstMWI GCNNNNNNNGC 4 cut(s) 140, 143, 212, 790
BstNI CCWGG 2 cut(s) 297, 587
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 295, 585
BstSFI CTRYAG 1 cut(s) 637
BstV1I GCAGC 6 cut(s) 85, 121, 155, 366, 419, 452
BstV2I GAAGAC 2 cut(s) 129, 697
BstX2I RGATCY 2 cut(s) 623, 658
BstYI RGATCY 2 cut(s) 623, 658
BsuRI GGCC 3 cut(s) 5, 83, 252
BtsCI GGATG 2 cut(s) 538, 805
BtsIMutI CAGTG 4 cut(s) 13, 331, 468, 806
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 129, 316, 356, 527
DdeI CTNAG 6 cut(s) 77, 287, 349, 367, 521, 751
DpnI GATC 5 cut(s) 52, 474, 579, 625, 660
DpnII GATC 5 cut(s) 50, 472, 577, 623, 658
EaeI YGGCCR 2 cut(s) 3, 250
Eam1104I CTCTTC 3 cut(s) 18, 144, 231
EarI CTCTTC 3 cut(s) 18, 144, 231
Eco24I GRGCYC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 295, 585
EcoT38I GRGCYC 1 cut(s) 413
FaeI CATG 4 cut(s) 132, 319, 359, 530
FaiI YATR 8 cut(s) 57, 130, 317, 357, 528, 639, 776, 840
FaqI GGGAC 2 cut(s) 259, 335
FatI CATG 4 cut(s) 128, 315, 355, 526
FauI CCCGC 1 cut(s) 680
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 7 cut(s) 74, 135, 144, 380, 433, 441, 677
FokI GGATG 2 cut(s) 545, 792
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 7 cut(s) 74, 135, 144, 380, 433, 441, 677
FspBI CTAG 1 cut(s) 620
FspI TGCGCA 1 cut(s) 760
GlaI GCGC 1 cut(s) 760
GluI GCNGC 7 cut(s) 74, 135, 144, 380, 433, 441, 677
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 3 cut(s) 5, 83, 252
HapII CCGG 2 cut(s) 414, 809
HhaI GCGC 1 cut(s) 761
Hin1II CATG 4 cut(s) 132, 319, 359, 530
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HinfI GANTC 5 cut(s) 125, 174, 242, 365, 796
HpaII CCGG 2 cut(s) 414, 809
Hpy166II GTNNAC 2 cut(s) 364, 669
Hpy188I TCNGA 4 cut(s) 370, 522, 628, 694
Hpy188III TCNNGA 4 cut(s) 479, 581, 809, 850
Hpy8I GTNNAC 2 cut(s) 364, 669
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 22, 288
HpyCH4III ACNGT 2 cut(s) 326, 703
HpyCH4V TGCA 2 cut(s) 435, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 143, 212, 790
HpyF3I CTNAG 6 cut(s) 77, 287, 349, 367, 521, 751
Hsp92II CATG 4 cut(s) 132, 319, 359, 530
HspAI GCGC 1 cut(s) 759
Kpn2I TCCGGA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 50, 472, 577, 623, 658
LmnI GCTCC 3 cut(s) 416, 647, 790
Lsp1109I GCAGC 6 cut(s) 85, 121, 155, 366, 419, 452
LweI GCATC 3 cut(s) 502, 721, 814
MaeI CTAG 1 cut(s) 620
MaeIII GTNAC 1 cut(s) 301
MalI GATC 5 cut(s) 52, 474, 579, 625, 660
MboI GATC 5 cut(s) 50, 472, 577, 623, 658
MflI RGATCY 2 cut(s) 623, 658
MhlI GDGCHC 2 cut(s) 293, 413
MlsI TGGCCA 2 cut(s) 5, 252
MluCI AATT 3 cut(s) 404, 560, 777
MluNI TGGCCA 2 cut(s) 5, 252
MlyI GAGTC 3 cut(s) 119, 359, 805
MmeI TCCRAC 1 cut(s) 202
Mox20I TGGCCA 2 cut(s) 5, 252
MroI TCCGGA 1 cut(s) 808
MscI TGGCCA 2 cut(s) 5, 252
MslI CAYNNNNRTG 1 cut(s) 531
Msp20I TGGCCA 2 cut(s) 5, 252
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 414, 809
MspR9I CCNGG 2 cut(s) 297, 587
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 2 cut(s) 297, 587
MwoI GCNNNNNNNGC 4 cut(s) 140, 143, 212, 790
NdeII GATC 5 cut(s) 50, 472, 577, 623, 658
NlaIII CATG 4 cut(s) 132, 319, 359, 530
NlaIV GGNNCC 2 cut(s) 310, 412
NsbI TGCGCA 1 cut(s) 760
NspI RCATGY 1 cut(s) 359
NspV TTCGAA 1 cut(s) 724
PaeI GCATGC 1 cut(s) 359
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 174, 242
PkrI GCNGC 7 cut(s) 75, 136, 145, 381, 434, 442, 678
PleI GAGTC 3 cut(s) 119, 359, 804
PpsI GAGTC 3 cut(s) 119, 359, 804
Psp6I CCWGG 2 cut(s) 295, 585
PspGI CCWGG 2 cut(s) 295, 585
PspN4I GGNNCC 2 cut(s) 310, 412
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 623, 658
PvuII CAGCTG 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 531
SatI GCNGC 7 cut(s) 74, 135, 144, 380, 433, 441, 677
Sau3AI GATC 5 cut(s) 50, 472, 577, 623, 658
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 3 cut(s) 119, 359, 805
ScrFI CCNGG 2 cut(s) 297, 587
SduI GDGCHC 2 cut(s) 293, 413
SetI ASST 9 cut(s) 78, 148, 445, 454, 544, 588, 604, 610, 674
SfaNI GCATC 3 cut(s) 502, 721, 814
SfcI CTRYAG 1 cut(s) 637
SfuI TTCGAA 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 531
SphI GCATGC 1 cut(s) 359
Sse9I AATT 3 cut(s) 404, 560, 777
SsiI CCGC 2 cut(s) 676, 687
SspI AATATT 1 cut(s) 746
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 2 cut(s) 295, 585
TaaI ACNGT 2 cut(s) 326, 703
TaqI TCGA 2 cut(s) 240, 724
TasI AATT 3 cut(s) 404, 560, 777
TauI GCSGC 1 cut(s) 679
TfiI GAWTC 2 cut(s) 174, 242
TscAI CASTG 4 cut(s) 13, 331, 475, 806
TseI GCWGC 6 cut(s) 73, 134, 143, 379, 432, 440
TspDTI ATGAA 2 cut(s) 117, 763
TspRI CASTG 4 cut(s) 13, 331, 475, 806
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.