Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020732.1

Orthogroup ID

OG0011305

Physical Location & Seq

Genomic Coordinates Reverse (-)

321 .. 3451

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggccagtgaagtagtagaagaagagaaggaaagattggtaataatgggatcgtatggaggaatggttaggcagctcagggccgcaaaaggagaagaagaagaagatgcagatgaagaagaagaagaagactcgtgtgctgctacggcagctgaagaggagataatgttgctgtggggaatccaacagccaactctctccaaaccaaacgcattcgtcgcccaatcctctcttcaactcaaactcgattcctgtggccaatctctctctattttccagtccccttcctccctgagcactcctggggttactggtgccgtcatgtgggacagtggagttgtattggggaagttcttagagcatgctgtagactcagagttgttgctgcttcaaggcaagaaagttgttgaattgggctccggctgtggtttagtcggctgcattgcagctcttttaggtagtcaagttgtcctcactgatcttcctgatagattgaggctactaaaaaagaacattgatgccaatctgagacatggggatgtgcgaggttcagcaaaagtgatggaattacaatggggagatgatcctgacctggaactgatagaacctccacctgatttcgttctaggatctgatgtaatctatagtgagggagcagtattggatctgctgtctaccttgcggcaactctgcgggtctgaaacaacagtcttcttggctggagaacttcgaaatgatgctgtccttgaatatttcttagagtgcgcaatggaggatttcataattgggcgtttggagcagagtcagtggcatccggacttttgtagcagtcgtgttgttttgtatgttttggtcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

287

Amino Acids

31.29

Weight (kDa)

4.35

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73320 AT1G73320
fragaria_vesca	FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica	MD06G1241200.v1.1
prunus_persica	Prupe.5G245300_v2.0.a1
pyrus_communis	pycom06g21630
rosa_chinensis	RchiOBHm_Chr7g0176921
rosa_laevigata	RLG00000005573
rosa_multiflora	Rmu_sc0020732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276290
rosa_rugosa	Rorug06G0401800 Rorug06G0401900
rosa_samantha	Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana	Rw7G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	369, 674
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	3 cut(s)	84, 682, 693
AclWI	GGATC	4 cut(s)	58, 578, 637, 672
AcoI	YGGCCR	2 cut(s)	3, 256
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	236, 392, 410, 749
AjnI	CCWGG	2 cut(s)	301, 591
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 216, 248
AluBI	AGCT	3 cut(s)	76, 152, 449
AluI	AGCT	3 cut(s)	76, 152, 449
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	4 cut(s)	58, 578, 637, 672
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	3 cut(s)	3, 81, 256
ApeKI	GCWGC	6 cut(s)	73, 140, 149, 385, 438, 446
AspLEI	GCGC	1 cut(s)	767
AspS9I	GGNCC	1 cut(s)	81
AsuII	TTCGAA	1 cut(s)	730
BalI	TGGCCA	2 cut(s)	5, 258
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	135, 703
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	6 cut(s)	85, 127, 161, 372, 425, 458
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	2 cut(s)	162, 302
BciT130I	CCWGG	2 cut(s)	303, 593
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	366, 643
BisI	GCNGC	8 cut(s)	74, 84, 141, 150, 386, 439, 447, 683
BlsI	GCNGC	8 cut(s)	75, 85, 142, 151, 387, 440, 448, 684
Bme1390I	CCNGG	2 cut(s)	303, 593
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	316, 418
BmrFI	CCNGG	2 cut(s)	303, 593
BmsI	GCATC	4 cut(s)	97, 508, 727, 820
BpiI	GAAGAC	2 cut(s)	135, 703
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	2 cut(s)	77, 293
Bpu14I	TTCGAA	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	3 cut(s)	6, 277, 316
Bse3DI	GCAATG	2 cut(s)	441, 774
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	2 cut(s)	303, 593
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	544, 811
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	2 cut(s)	441, 774
BseMII	CTCAG	4 cut(s)	91, 284, 387, 518
BseNI	ACTGG	3 cut(s)	6, 277, 316
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	6 cut(s)	85, 127, 161, 372, 425, 458
BshFI	GGCC	3 cut(s)	5, 83, 258
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	420, 815
BslFI	GGGAC	2 cut(s)	265, 341
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	265, 341
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	5, 83, 258
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	299, 419
Bsp13I	TCCGGA	1 cut(s)	814
Bsp143I	GATC	5 cut(s)	50, 478, 583, 629, 664
BspACI	CCGC	3 cut(s)	84, 682, 693
BspANI	GGCC	3 cut(s)	5, 83, 258
BspCNI	CTCAG	4 cut(s)	90, 285, 386, 519
BspEI	TCCGGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	316, 418
BspPI	GGATC	4 cut(s)	58, 578, 637, 672
BspT104I	TTCGAA	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	441, 774
BsrI	ACTGG	3 cut(s)	6, 277, 316
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	5 cut(s)	50, 478, 583, 629, 664
BssSI	CACGAG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	303, 593
Bst4CI	ACNGT	2 cut(s)	332, 709
Bst6I	CTCTTC	3 cut(s)	18, 150, 237
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	6 cut(s)	77, 293, 355, 373, 527, 757
BstF5I	GGATG	2 cut(s)	544, 811
BstHHI	GCGC	1 cut(s)	767
BstKTI	GATC	5 cut(s)	53, 481, 586, 632, 667
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	5 cut(s)	50, 478, 583, 629, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 149, 218, 796
BstNI	CCWGG	2 cut(s)	303, 593
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	301, 591
BstSFI	CTRYAG	2 cut(s)	366, 643
BstV1I	GCAGC	6 cut(s)	85, 127, 161, 372, 425, 458
BstV2I	GAAGAC	2 cut(s)	135, 703
BstX2I	RGATCY	2 cut(s)	629, 664
BstYI	RGATCY	2 cut(s)	629, 664
BsuRI	GGCC	3 cut(s)	5, 83, 258
BtsCI	GGATG	2 cut(s)	544, 811
BtsIMutI	CAGTG	4 cut(s)	13, 337, 474, 812
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	767
Cfr13I	GGNCC	1 cut(s)	81
CviAII	CATG	3 cut(s)	322, 362, 533
DdeI	CTNAG	6 cut(s)	77, 293, 355, 373, 527, 757
DpnI	GATC	5 cut(s)	52, 480, 585, 631, 666
DpnII	GATC	5 cut(s)	50, 478, 583, 629, 664
EaeI	YGGCCR	2 cut(s)	3, 256
Eam1104I	CTCTTC	3 cut(s)	18, 150, 237
EarI	CTCTTC	3 cut(s)	18, 150, 237
Eco24I	GRGCYC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	301, 591
EcoT38I	GRGCYC	1 cut(s)	419
FaeI	CATG	3 cut(s)	325, 365, 536
FaiI	YATR	7 cut(s)	57, 323, 363, 534, 645, 782, 846
FaqI	GGGAC	2 cut(s)	265, 341
FatI	CATG	3 cut(s)	321, 361, 532
FauI	CCCGC	1 cut(s)	686
FblI	GTMKAC	2 cut(s)	369, 674
Fnu4HI	GCNGC	8 cut(s)	74, 84, 141, 150, 386, 439, 447, 683
FokI	GGATG	2 cut(s)	551, 798
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	8 cut(s)	74, 84, 141, 150, 386, 439, 447, 683
FspBI	CTAG	1 cut(s)	626
FspI	TGCGCA	1 cut(s)	766
GlaI	GCGC	1 cut(s)	766
GluI	GCNGC	8 cut(s)	74, 84, 141, 150, 386, 439, 447, 683
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	3 cut(s)	5, 83, 258
HapII	CCGG	2 cut(s)	420, 815
HhaI	GCGC	1 cut(s)	767
Hin1II	CATG	3 cut(s)	325, 365, 536
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HinfI	GANTC	5 cut(s)	131, 180, 248, 371, 802
HpaII	CCGG	2 cut(s)	420, 815
Hpy166II	GTNNAC	2 cut(s)	370, 675
Hpy188I	TCNGA	4 cut(s)	376, 528, 634, 700
Hpy188III	TCNNGA	4 cut(s)	485, 587, 815, 856
Hpy8I	GTNNAC	2 cut(s)	370, 675
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	22, 294
HpyCH4III	ACNGT	2 cut(s)	332, 709
HpyCH4V	TGCA	3 cut(s)	110, 441, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 149, 218, 796
HpyF3I	CTNAG	6 cut(s)	77, 293, 355, 373, 527, 757
Hsp92II	CATG	3 cut(s)	325, 365, 536
HspAI	GCGC	1 cut(s)	765
Kpn2I	TCCGGA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	50, 478, 583, 629, 664
LmnI	GCTCC	3 cut(s)	422, 653, 796
Lsp1109I	GCAGC	6 cut(s)	85, 127, 161, 372, 425, 458
LweI	GCATC	4 cut(s)	97, 508, 727, 820
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	52, 480, 585, 631, 666
MboI	GATC	5 cut(s)	50, 478, 583, 629, 664
MflI	RGATCY	2 cut(s)	629, 664
MhlI	GDGCHC	2 cut(s)	299, 419
MlsI	TGGCCA	2 cut(s)	5, 258
MluCI	AATT	3 cut(s)	410, 566, 783
MluNI	TGGCCA	2 cut(s)	5, 258
MlyI	GAGTC	3 cut(s)	125, 365, 811
MmeI	TCCRAC	1 cut(s)	208
Mox20I	TGGCCA	2 cut(s)	5, 258
MroI	TCCGGA	1 cut(s)	814
MscI	TGGCCA	2 cut(s)	5, 258
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	2 cut(s)	5, 258
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	2 cut(s)	420, 815
MspR9I	CCNGG	2 cut(s)	303, 593
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	303, 593
MwoI	GCNNNNNNNGC	4 cut(s)	146, 149, 218, 796
NdeII	GATC	5 cut(s)	50, 478, 583, 629, 664
NlaIII	CATG	3 cut(s)	325, 365, 536
NlaIV	GGNNCC	2 cut(s)	316, 418
NsbI	TGCGCA	1 cut(s)	766
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	180, 248
PkrI	GCNGC	8 cut(s)	75, 85, 142, 151, 387, 440, 448, 684
PleI	GAGTC	3 cut(s)	125, 365, 810
PpsI	GAGTC	3 cut(s)	125, 365, 810
Psp6I	CCWGG	2 cut(s)	301, 591
PspGI	CCWGG	2 cut(s)	301, 591
PspN4I	GGNNCC	2 cut(s)	316, 418
PspPI	GGNCC	1 cut(s)	81
PsuI	RGATCY	2 cut(s)	629, 664
PvuII	CAGCTG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	537
SatI	GCNGC	8 cut(s)	74, 84, 141, 150, 386, 439, 447, 683
Sau3AI	GATC	5 cut(s)	50, 478, 583, 629, 664
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	3 cut(s)	125, 365, 811
ScrFI	CCNGG	2 cut(s)	303, 593
SduI	GDGCHC	2 cut(s)	299, 419
SetI	ASST	9 cut(s)	78, 154, 451, 460, 550, 594, 610, 616, 680
SfaNI	GCATC	4 cut(s)	97, 508, 727, 820
SfcI	CTRYAG	2 cut(s)	366, 643
SfuI	TTCGAA	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	410, 566, 783
SsiI	CCGC	3 cut(s)	84, 682, 693
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	301, 591
TaaI	ACNGT	2 cut(s)	332, 709
TaqI	TCGA	2 cut(s)	246, 730
TasI	AATT	3 cut(s)	410, 566, 783
TauI	GCSGC	2 cut(s)	86, 685
TfiI	GAWTC	2 cut(s)	180, 248
TscAI	CASTG	4 cut(s)	13, 337, 481, 812
TseI	GCWGC	6 cut(s)	73, 140, 149, 385, 438, 446
TspDTI	ATGAA	2 cut(s)	129, 769
TspRI	CASTG	4 cut(s)	13, 337, 481, 812
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	369, 674
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.