Rroxscaffold_3G00276290

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011305
Physical Location & Seq
Reverse (-)
67549912 .. 67552899
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276290.1

Sequence Viewer

Length: 813 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCCAAAGGAGAAGAAGAAGACTCATGTGCTGCTACGACAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCGAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTGGACTCAGAGTTGTTACTGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCTACCTGATTTTGTTCTAGGATCTGATGTAATCTATAGTGAGGGAGCAGTATTGGATCTGCTGTCAACCTTGCGGCAACTCTGCGGGTCTGAAACAACAGTCTTCTTGGCTGGAGAACTTCGAAATGAGTGCGCAATGGAGGATTTCATAATTGGGCGTTTGGAGCAGAGTCAGTGGCATCCAGACTTTTGTAGCAGTCGTGTTGTTTTGTATGTTTTGGTCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

270

Amino Acids

29.31

Weight (kDa)

4.52

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 95 - 238 2.5e-32 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 3 cut(s) 84, 655, 666
AclWI GGATC 4 cut(s) 58, 551, 610, 645
AcoI YGGCCR 2 cut(s) 3, 229
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 3 cut(s) 209, 365, 383
AjnI CCWGG 2 cut(s) 274, 564
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 189, 221
AluBI AGCT 3 cut(s) 76, 125, 422
AluI AGCT 3 cut(s) 76, 125, 422
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 4 cut(s) 58, 551, 610, 645
AoxI GGCC 3 cut(s) 3, 81, 229
ApeKI GCWGC 4 cut(s) 73, 113, 411, 419
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 703
BalI TGGCCA 2 cut(s) 5, 231
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 2 cut(s) 108, 676
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 85, 100, 398, 431
BccI CCATC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 2 cut(s) 276, 566
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 616
BisI GCNGC 6 cut(s) 74, 84, 114, 412, 420, 656
BlsI GCNGC 6 cut(s) 75, 85, 115, 413, 421, 657
Bme1390I CCNGG 2 cut(s) 276, 566
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 289, 391
BmrFI CCNGG 2 cut(s) 276, 566
BmsI GCATC 2 cut(s) 481, 769
BpiI GAAGAC 2 cut(s) 108, 676
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 2 cut(s) 77, 266
Bpu14I TTCGAA 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 3 cut(s) 6, 250, 289
Bse3DI GCAATG 2 cut(s) 414, 723
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 276, 566
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 517, 760
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 2 cut(s) 414, 723
BseMII CTCAG 4 cut(s) 91, 257, 360, 491
BseNI ACTGG 3 cut(s) 6, 250, 289
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 85, 100, 398, 431
BshFI GGCC 3 cut(s) 5, 83, 231
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 238, 314
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 2 cut(s) 238, 314
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 3 cut(s) 5, 83, 231
Bsp119I TTCGAA 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 272, 392
Bsp143I GATC 5 cut(s) 50, 451, 556, 602, 637
BspACI CCGC 3 cut(s) 84, 655, 666
BspANI GGCC 3 cut(s) 5, 83, 231
BspCNI CTCAG 4 cut(s) 90, 258, 359, 492
BspLI GGNNCC 2 cut(s) 289, 391
BspPI GGATC 4 cut(s) 58, 551, 610, 645
BspT104I TTCGAA 1 cut(s) 703
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 414, 723
BsrI ACTGG 3 cut(s) 6, 250, 289
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 5 cut(s) 50, 451, 556, 602, 637
Bst2UI CCWGG 2 cut(s) 276, 566
Bst4CI ACNGT 2 cut(s) 305, 682
Bst6I CTCTTC 3 cut(s) 18, 123, 210
BstBI TTCGAA 1 cut(s) 703
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 5 cut(s) 77, 266, 328, 346, 500
BstF5I GGATG 2 cut(s) 517, 760
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 5 cut(s) 53, 454, 559, 605, 640
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 5 cut(s) 50, 451, 556, 602, 637
BstMWI GCNNNNNNNGC 3 cut(s) 122, 191, 745
BstNI CCWGG 2 cut(s) 276, 566
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 274, 564
BstSFI CTRYAG 1 cut(s) 616
BstV1I GCAGC 4 cut(s) 85, 100, 398, 431
BstV2I GAAGAC 2 cut(s) 108, 676
BstX2I RGATCY 2 cut(s) 602, 637
BstYI RGATCY 2 cut(s) 602, 637
BsuRI GGCC 3 cut(s) 5, 83, 231
BtsCI GGATG 2 cut(s) 517, 760
BtsIMutI CAGTG 4 cut(s) 13, 310, 447, 761
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 108, 295, 335, 506
DdeI CTNAG 5 cut(s) 77, 266, 328, 346, 500
DpnI GATC 5 cut(s) 52, 453, 558, 604, 639
DpnII GATC 5 cut(s) 50, 451, 556, 602, 637
EaeI YGGCCR 2 cut(s) 3, 229
Eam1104I CTCTTC 3 cut(s) 18, 123, 210
EarI CTCTTC 3 cut(s) 18, 123, 210
Eco24I GRGCYC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 274, 564
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 4 cut(s) 111, 298, 338, 509
FaiI YATR 8 cut(s) 57, 109, 296, 336, 507, 618, 731, 795
FaqI GGGAC 2 cut(s) 238, 314
FatI CATG 4 cut(s) 107, 294, 334, 505
FauI CCCGC 1 cut(s) 659
Fnu4HI GCNGC 6 cut(s) 74, 84, 114, 412, 420, 656
FokI GGATG 2 cut(s) 524, 747
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 6 cut(s) 74, 84, 114, 412, 420, 656
FspBI CTAG 1 cut(s) 599
FspI TGCGCA 1 cut(s) 715
GlaI GCGC 1 cut(s) 715
GluI GCNGC 6 cut(s) 74, 84, 114, 412, 420, 656
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 3 cut(s) 5, 83, 231
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 716
Hin1II CATG 4 cut(s) 111, 298, 338, 509
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 5 cut(s) 104, 153, 221, 344, 751
HpaII CCGG 1 cut(s) 393
Hpy166II GTNNAC 2 cut(s) 343, 648
Hpy188I TCNGA 4 cut(s) 349, 501, 607, 673
Hpy188III TCNNGA 4 cut(s) 458, 560, 764, 805
Hpy8I GTNNAC 2 cut(s) 343, 648
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 22, 267
HpyCH4III ACNGT 2 cut(s) 305, 682
HpyCH4V TGCA 2 cut(s) 414, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 191, 745
HpyF3I CTNAG 5 cut(s) 77, 266, 328, 346, 500
Hsp92II CATG 4 cut(s) 111, 298, 338, 509
HspAI GCGC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 50, 451, 556, 602, 637
LmnI GCTCC 3 cut(s) 395, 626, 745
Lsp1109I GCAGC 4 cut(s) 85, 100, 398, 431
LweI GCATC 2 cut(s) 481, 769
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 2 cut(s) 280, 354
MalI GATC 5 cut(s) 52, 453, 558, 604, 639
MboI GATC 5 cut(s) 50, 451, 556, 602, 637
MboII GAAGA 9 cut(s) 32, 35, 107, 110, 113, 140, 197, 446, 676
MflI RGATCY 2 cut(s) 602, 637
MhlI GDGCHC 2 cut(s) 272, 392
MlsI TGGCCA 2 cut(s) 5, 231
MluCI AATT 3 cut(s) 383, 539, 732
MluNI TGGCCA 2 cut(s) 5, 231
MlyI GAGTC 3 cut(s) 98, 338, 760
MmeI TCCRAC 1 cut(s) 181
Mox20I TGGCCA 2 cut(s) 5, 231
MscI TGGCCA 2 cut(s) 5, 231
MslI CAYNNNNRTG 1 cut(s) 510
Msp20I TGGCCA 2 cut(s) 5, 231
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 276, 566
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 276, 566
MwoI GCNNNNNNNGC 3 cut(s) 122, 191, 745
NdeII GATC 5 cut(s) 50, 451, 556, 602, 637
NlaIII CATG 4 cut(s) 111, 298, 338, 509
NlaIV GGNNCC 2 cut(s) 289, 391
NsbI TGCGCA 1 cut(s) 715
NspI RCATGY 1 cut(s) 338
NspV TTCGAA 1 cut(s) 703
PaeI GCATGC 1 cut(s) 338
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 153, 221
PkrI GCNGC 6 cut(s) 75, 85, 115, 413, 421, 657
PleI GAGTC 3 cut(s) 98, 338, 759
PpsI GAGTC 3 cut(s) 98, 338, 759
Psp6I CCWGG 2 cut(s) 274, 564
PspGI CCWGG 2 cut(s) 274, 564
PspN4I GGNNCC 2 cut(s) 289, 391
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 602, 637
PvuII CAGCTG 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 510
SatI GCNGC 6 cut(s) 74, 84, 114, 412, 420, 656
Sau3AI GATC 5 cut(s) 50, 451, 556, 602, 637
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 3 cut(s) 98, 338, 760
ScrFI CCNGG 2 cut(s) 276, 566
SduI GDGCHC 2 cut(s) 272, 392
SetI ASST 9 cut(s) 78, 127, 424, 433, 523, 567, 583, 589, 653
SfaNI GCATC 2 cut(s) 481, 769
SfcI CTRYAG 1 cut(s) 616
SfuI TTCGAA 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 510
SphI GCATGC 1 cut(s) 338
Sse9I AATT 3 cut(s) 383, 539, 732
SsiI CCGC 3 cut(s) 84, 655, 666
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 274, 564
TaaI ACNGT 2 cut(s) 305, 682
TaqI TCGA 3 cut(s) 213, 219, 703
TasI AATT 3 cut(s) 383, 539, 732
TauI GCSGC 2 cut(s) 86, 658
TfiI GAWTC 2 cut(s) 153, 221
TscAI CASTG 4 cut(s) 13, 310, 454, 761
TseI GCWGC 4 cut(s) 73, 113, 411, 419
TspDTI ATGAA 1 cut(s) 718
TspRI CASTG 4 cut(s) 13, 310, 454, 761
XceI RCATGY 1 cut(s) 338
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.