Rh7AG001400

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011305
Physical Location & Seq
Forward (+)
171379 .. 174595
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG001400.1

Sequence Viewer

Length: 864 bp
ATGGCCAGTGAAGTAGTAGAAGAAGAGAAGGAAAGATTGGTAATAATGGGATCGTATGGAGGAATGGTTAGGCAGCTCAGGGCCGCAAAAGGAGAAGAAGAAGAAGATGCAGATGAAGAAGAAGAAGAAGACTCATGTGCTGCTACGGCAGCTGAAGAGGAGATAATGTTGCTGTGGGGAATCCAACAGCCAACTCTCTCCAAACCAAACGCATTCGTCGCCCAATCCTCTCTTCAACTCAAACTCGATTCCTGTGGCCAATCTCTCTCTATTTTCCAGTCCCCTTCCTCCCTGAGCACTCCTGGGGTTACTGGTGCCGTCATGTGGGACAGTGGAGTTGTATTGGGGAAGTTCTTAGAGCATGCTGTAGACTCAGAGTTGTTGCAGCTTCAAGGCAAGAAAGTTGTTGAATTGGGCTCCGGCTGTGGTTTAGTCGGCTGCATTGCAGCTCTTTTAGGTAGTCAAGTTGTCCTCACTGATCTTCCTGATAGATTGAGGCTACTAAAAAAGAACATTGATGCCAATCTGAGACATGGGGATGTGCGAGGTTCAGCAAAAGTGATGGAATTACAATGGGGAGATGATCCTGACCTGGAACTGATAGAACCTCCACCTGATTTCGTTCTAGGATCTGATGTAATCTATAGTGAGGGAGCAGTATTGGATCTGCTGTCTACCTTGCGGCAACTCTGCGGGTCTGAAACAACAGTCTTCTTGGCTGGAGAACTTCGAAATGATGCTGTCCTTGAATATTTCTTAGAGTGCGCAATGGAGGATTTCATAATTGGGCGTTTGGAGCAGAGTCAGTGGCATCCGGACTTTTGTAGCAGTCGTGTTGTTTTGTATGTTTTGGTCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

287

Amino Acids

31.31

Weight (kDa)

4.35

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 104 - 252 9e-34 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73320 AT1G73320
fragaria_vesca FvH4_5g18590 FvH4_5g18590 FvH4_5g18590 FvH4_5g18590
malus_domestica MD06G1241200.v1.1
prunus_persica Prupe.5G245300_v2.0.a1
pyrus_communis pycom06g21630
rosa_chinensis RchiOBHm_Chr7g0176921
rosa_laevigata RLG00000005573
rosa_multiflora Rmu_sc0020732.1_g000001
rosa_roxburghii Rroxscaffold_3G00276290
rosa_rugosa Rorug06G0401800 Rorug06G0401900
rosa_samantha Rh7AG001400 Rh7BG001700 Rh7CG001200 Rh7DG001500
rosa_wichuraiana Rw7G000100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 2 cut(s) 369, 674
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 3 cut(s) 84, 682, 693
AclWI GGATC 4 cut(s) 58, 578, 637, 672
AcoI YGGCCR 2 cut(s) 3, 256
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 4 cut(s) 236, 392, 410, 749
AjnI CCWGG 2 cut(s) 301, 591
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 216, 248
AluBI AGCT 4 cut(s) 76, 152, 388, 449
AluI AGCT 4 cut(s) 76, 152, 388, 449
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 4 cut(s) 58, 578, 637, 672
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 3 cut(s) 3, 81, 256
ApeKI GCWGC 6 cut(s) 73, 140, 149, 385, 438, 446
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 730
BalI TGGCCA 2 cut(s) 5, 258
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 135, 703
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 6 cut(s) 85, 127, 161, 397, 425, 458
BccI CCATC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 162, 302
BciT130I CCWGG 2 cut(s) 303, 593
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 2 cut(s) 366, 643
BisI GCNGC 8 cut(s) 74, 84, 141, 150, 386, 439, 447, 683
BlsI GCNGC 8 cut(s) 75, 85, 142, 151, 387, 440, 448, 684
Bme1390I CCNGG 2 cut(s) 303, 593
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 316, 418
BmrFI CCNGG 2 cut(s) 303, 593
BmsI GCATC 4 cut(s) 97, 508, 727, 820
BpiI GAAGAC 2 cut(s) 135, 703
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 2 cut(s) 77, 293
Bpu14I TTCGAA 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 3 cut(s) 6, 277, 316
Bse3DI GCAATG 2 cut(s) 441, 774
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 2 cut(s) 303, 593
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 544, 811
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 441, 774
BseMII CTCAG 4 cut(s) 91, 284, 387, 518
BseNI ACTGG 3 cut(s) 6, 277, 316
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 6 cut(s) 85, 127, 161, 397, 425, 458
BshFI GGCC 3 cut(s) 5, 83, 258
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 420, 815
BslFI GGGAC 2 cut(s) 265, 341
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 265, 341
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 5, 83, 258
Bsp119I TTCGAA 1 cut(s) 730
Bsp1286I GDGCHC 2 cut(s) 299, 419
Bsp13I TCCGGA 1 cut(s) 814
Bsp143I GATC 5 cut(s) 50, 478, 583, 629, 664
BspACI CCGC 3 cut(s) 84, 682, 693
BspANI GGCC 3 cut(s) 5, 83, 258
BspCNI CTCAG 4 cut(s) 90, 285, 386, 519
BspEI TCCGGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 316, 418
BspPI GGATC 4 cut(s) 58, 578, 637, 672
BspT104I TTCGAA 1 cut(s) 730
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 441, 774
BsrI ACTGG 3 cut(s) 6, 277, 316
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 5 cut(s) 50, 478, 583, 629, 664
Bst2UI CCWGG 2 cut(s) 303, 593
Bst4CI ACNGT 2 cut(s) 332, 709
Bst6I CTCTTC 3 cut(s) 18, 150, 237
BstBI TTCGAA 1 cut(s) 730
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 6 cut(s) 77, 293, 355, 373, 527, 757
BstF5I GGATG 2 cut(s) 544, 811
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 5 cut(s) 53, 481, 586, 632, 667
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 5 cut(s) 50, 478, 583, 629, 664
BstMWI GCNNNNNNNGC 4 cut(s) 146, 149, 218, 796
BstNI CCWGG 2 cut(s) 303, 593
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 301, 591
BstSFI CTRYAG 2 cut(s) 366, 643
BstV1I GCAGC 6 cut(s) 85, 127, 161, 397, 425, 458
BstV2I GAAGAC 2 cut(s) 135, 703
BstX2I RGATCY 2 cut(s) 629, 664
BstYI RGATCY 2 cut(s) 629, 664
BsuRI GGCC 3 cut(s) 5, 83, 258
BtsCI GGATG 2 cut(s) 544, 811
BtsIMutI CAGTG 4 cut(s) 13, 337, 474, 812
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 4 cut(s) 135, 322, 362, 533
DdeI CTNAG 6 cut(s) 77, 293, 355, 373, 527, 757
DpnI GATC 5 cut(s) 52, 480, 585, 631, 666
DpnII GATC 5 cut(s) 50, 478, 583, 629, 664
EaeI YGGCCR 2 cut(s) 3, 256
Eam1104I CTCTTC 3 cut(s) 18, 150, 237
EarI CTCTTC 3 cut(s) 18, 150, 237
Eco24I GRGCYC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 301, 591
EcoT38I GRGCYC 1 cut(s) 419
FaeI CATG 4 cut(s) 138, 325, 365, 536
FaiI YATR 8 cut(s) 57, 136, 323, 363, 534, 645, 782, 846
FaqI GGGAC 2 cut(s) 265, 341
FatI CATG 4 cut(s) 134, 321, 361, 532
FauI CCCGC 1 cut(s) 686
FblI GTMKAC 2 cut(s) 369, 674
Fnu4HI GCNGC 8 cut(s) 74, 84, 141, 150, 386, 439, 447, 683
FokI GGATG 2 cut(s) 551, 798
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 8 cut(s) 74, 84, 141, 150, 386, 439, 447, 683
FspBI CTAG 1 cut(s) 626
FspI TGCGCA 1 cut(s) 766
GlaI GCGC 1 cut(s) 766
GluI GCNGC 8 cut(s) 74, 84, 141, 150, 386, 439, 447, 683
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 3 cut(s) 5, 83, 258
HapII CCGG 2 cut(s) 420, 815
HhaI GCGC 1 cut(s) 767
Hin1II CATG 4 cut(s) 138, 325, 365, 536
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HinfI GANTC 5 cut(s) 131, 180, 248, 371, 802
HpaII CCGG 2 cut(s) 420, 815
Hpy166II GTNNAC 2 cut(s) 370, 675
Hpy188I TCNGA 4 cut(s) 376, 528, 634, 700
Hpy188III TCNNGA 4 cut(s) 485, 587, 815, 856
Hpy8I GTNNAC 2 cut(s) 370, 675
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 22, 294
HpyCH4III ACNGT 2 cut(s) 332, 709
HpyCH4V TGCA 4 cut(s) 110, 385, 441, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 149, 218, 796
HpyF3I CTNAG 6 cut(s) 77, 293, 355, 373, 527, 757
Hsp92II CATG 4 cut(s) 138, 325, 365, 536
HspAI GCGC 1 cut(s) 765
Kpn2I TCCGGA 1 cut(s) 814
Kzo9I GATC 5 cut(s) 50, 478, 583, 629, 664
LmnI GCTCC 3 cut(s) 422, 653, 796
Lsp1109I GCAGC 6 cut(s) 85, 127, 161, 397, 425, 458
LweI GCATC 4 cut(s) 97, 508, 727, 820
MaeI CTAG 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 307
MalI GATC 5 cut(s) 52, 480, 585, 631, 666
MboI GATC 5 cut(s) 50, 478, 583, 629, 664
MflI RGATCY 2 cut(s) 629, 664
MhlI GDGCHC 2 cut(s) 299, 419
MlsI TGGCCA 2 cut(s) 5, 258
MluCI AATT 3 cut(s) 410, 566, 783
MluNI TGGCCA 2 cut(s) 5, 258
MlyI GAGTC 3 cut(s) 125, 365, 811
MmeI TCCRAC 1 cut(s) 208
Mox20I TGGCCA 2 cut(s) 5, 258
MroI TCCGGA 1 cut(s) 814
MscI TGGCCA 2 cut(s) 5, 258
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 2 cut(s) 5, 258
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 420, 815
MspR9I CCNGG 2 cut(s) 303, 593
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 303, 593
MwoI GCNNNNNNNGC 4 cut(s) 146, 149, 218, 796
NdeII GATC 5 cut(s) 50, 478, 583, 629, 664
NlaIII CATG 4 cut(s) 138, 325, 365, 536
NlaIV GGNNCC 2 cut(s) 316, 418
NsbI TGCGCA 1 cut(s) 766
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 730
PaeI GCATGC 1 cut(s) 365
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 180, 248
PkrI GCNGC 8 cut(s) 75, 85, 142, 151, 387, 440, 448, 684
PleI GAGTC 3 cut(s) 125, 365, 810
PpsI GAGTC 3 cut(s) 125, 365, 810
Psp6I CCWGG 2 cut(s) 301, 591
PspGI CCWGG 2 cut(s) 301, 591
PspN4I GGNNCC 2 cut(s) 316, 418
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 629, 664
PvuII CAGCTG 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 537
SatI GCNGC 8 cut(s) 74, 84, 141, 150, 386, 439, 447, 683
Sau3AI GATC 5 cut(s) 50, 478, 583, 629, 664
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 3 cut(s) 125, 365, 811
ScrFI CCNGG 2 cut(s) 303, 593
SduI GDGCHC 2 cut(s) 299, 419
SfaNI GCATC 4 cut(s) 97, 508, 727, 820
SfcI CTRYAG 2 cut(s) 366, 643
SfuI TTCGAA 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 537
SphI GCATGC 1 cut(s) 365
Sse9I AATT 3 cut(s) 410, 566, 783
SsiI CCGC 3 cut(s) 84, 682, 693
SspI AATATT 1 cut(s) 752
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 301, 591
TaaI ACNGT 2 cut(s) 332, 709
TaqI TCGA 2 cut(s) 246, 730
TasI AATT 3 cut(s) 410, 566, 783
TauI GCSGC 2 cut(s) 86, 685
TfiI GAWTC 2 cut(s) 180, 248
TscAI CASTG 4 cut(s) 13, 337, 481, 812
TseI GCWGC 6 cut(s) 73, 140, 149, 385, 438, 446
TspDTI ATGAA 2 cut(s) 129, 769
TspRI CASTG 4 cut(s) 13, 337, 481, 812
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 369, 674
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.