Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005762

Physical Location & Seq

Genomic Coordinates Forward (+)

11348248 .. 11354634

Gene Structure 6387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4239 bp

ATGGCTGGTGTGCGGGAGATAACTGCTGGTGAACTCATAAAAGGTGGCCATAGACAGGGCCTGTTTTCTCACAGAGGTCCTTTGAAAGGAAGAAGCCCAGTGCTTTGGGGGACACTGCACAATTCAGTGCGGGGTTCTGTTACTAGGAGAAATGCTTCATTGAGATGTCATGCTAAGGAGAAGCCCACAGCTGTTGTTTCGGCTGTGAGCAGTTCAGTAGAGGCACTACCGAGTGTGGTTGAGAAGCCTTCGTCCTCAGTTATCCATTTTTATCGTGTTCCTCTGATTCAGGAGAGTGCAACGTCTGAGCTTCTCAAAACCGTGCAGTCAAAGATTTCGAGCCAGATAGTTGGTTTGAAAACTGAGCAGTGTTTCAACATTGGGCTCAGTTCGCAGCTTTCTAGTGAAAAGGTTGCGGTGCTTAAGTGGCTTCTTCAGGAGACTTATGAGCCGGAGAATTTGGGAGTTGACAGCTTTCTTGTAAAGAAAAGGCAGGAAGGACTGAACACAGTTATTGTTGAGGTTGGTCCTCGGTTGTCATTTACAACAGCGTGGTCATCCAATGCTGTCTCAATATGTAGAGCTTGCGGCTTGACAGAAGTCACTCGTTTGGAACGGTCAAGGAGGTACTTGTTGTTTAGTAAGGGTAACTTGCAGGATCAACAGATTAATGAGTTTGCCGCAATGATTCATGATCGGATGACAGAGTGTGTTTACACCCAGCAGCTCACTTCTTTTGAAACGAGTGTGGTCCCCGACAAAGTACGCCATATTCCTGTCATGGAGAGAGGTCGGAAAGCGTTAGAGGAGATTAATCAGGAGATGGGTTTGGCATTTGATGAGCAAGATCTCCAATACTACACCAGGCTATTCAAGGAAGATATCAAGCGGAATCCAACAACAGTTGAACTCTTCGATATTGCACAGTCCAACAGTGAGCATAGCAGGCACTGGTTTTTCACTGGTAAAATTTTTATAGATGGACAGCCTATGGACAAAACACTCATGCAAATTGTGAAGAGCACTTTGCAAGCAAACCCGAACAACTCTGTCATTGGTTTCAAGGACAACTCGAGTGCAATCAGGGGATTTCTTGTGAAGCAATTGCGACCAGTTCAGCCAGGTTCAACATCTCCATTGCAGATGTCTACACGGGACCTTGATATATTATTTACTGCAGAGACCCATAATTTTCCTTGTGCTGTAGCACCTTACCCTGGGGCAGAGACAGGTGCAGGAGGTAGAATCAGGGACACACATGCAACTGGAAGGGGGTCTTTTGTGGTAGCATCTACTGCTGGTTATTGTGTCGGGAATCTCAATATGGAAGGATCTTATGCTCCTTGGGAAGATTCGTCTTTCTTGTATCCATCAAATTTGGCCTCGCCTTTGCAGATCCTCATAGATGGTAGTAATGGTGCATCAGACTACGGCAACAAATTTGGTGAGCCCTTGATTCAGGGATACACTAGAACCTTTGGAATGAGACTCCCAAGCGGTGAGAGACGGGAATGGTTGAAGCCAATCATGTTCAGTGCAGGGATTGGACAGATAGATCACACTCATATAACAAAAGGAGAGCCTGATATTGGCATGCTGGTTGTGAAGATTGGAGGCCCTGCTTATCGTATTGGTATGGGTGGTGGGGCTGCATCAAGCATGGTTAGTGGTCAAAATGACGCAGAGCTTGATTTCAATGCTGTACAGCGTGGGGATGCAGAGATGGCACAAAAATTGTATCGTGTTGTTCGTGCCTGCATTGAGATGGGGGAGGGTAACCCGATCATTAGTATTCATGACCAAGGAGCTGGCGGAAACTGCAATGTGGTTAAGGAAATTATTTACCCAAAGGGTGGGGAGATTGATATCCGGGCAATTGTAGTTGGTGATTATACAATGTCTGTCTTGGAGATATGGGGTGCAGAATATCAGGAACAAGATGCCATCTTGGTTAAGCCTGAAAGTCGTGAGCTTTTGCAATCAATTTGTGAAAGAGAAAGGTGTTCCATGGCAGTTATTGGAACAATAAATGGTGAGGGGCGAATTGTTTTGATTGATAGCTTAGCTATTGAAAAATCTAAATCAAGTGGCCTCCCTCCTCCTGATCCTGCTGTCAATTTGGAGCTTGAGAAAGTACTTGGTGATATGCCACAAAAAAGCTTTGAGTTCCAGCGGATGGCTGATGCACGAGAGCCACTTGATATTGCCCCTGGTATCACTGTAATGGATGCTCTGAAGAGAGTTTTAAGACTTCCATCCATCTGTTCAAAGCGCTTCTTGACATCGAAAGTAGACAGGTGTGTTACAGGTCTGGTAGGTCAGCAGCAAACTGTCGGGCCTCTGCAAATTCCTCTCTCTGATGTTGGAGTAATTGCTCAGACTTTTACCGGGTTGACTGGAGGTGCATGTGCCATTGGGGAGCAGCCAATCAAAGGTTTGTTGGATCCAAAAGCAATGGCAAGATTGGCAGTTGGAGAAGCACTCACAAATCTTGTTTGGGCAAAGGTCACTTCTCTATCTGATGTTAAAGCAAGTGGGAATTGGATGTATGCAGCCAAGCTTGATGGTGAAGGTGCAGCAATGTATGATGCTGCTAATGCTCTTTCAGACACAATGATCACACTTGGTATTGCTATTGATGGTGGAAAGGATAGTCTTTCCATGGCAGCCCATGCTGCAGGAGAGGTTGTTAAGGCTCCTGGAAATCTTGTAATCAGTGTTTATTGTACTTGTCCTGACATAACAAAAACAGTAACCCCAGATTTGAAGCTTGCAGATGATGGTGTTCTGCTTCACATTGATTTGGCCGCAGGAAAGCGGCGATTAGGTGGCTCTGCTCTTGCTCAGGTTTTTGACCAAATTGGGAACGATTGTCCTGACCTTGAGGATGTTCCGTATCTGAAGCAAGTGTTTGAGGGAGTTCAGGGCCTTCTTGATGATGAACTGATCTCTGCTGGCCATGATATCAGTGATGGTGGGCTTCTGGTCTGTGCCCTTGAGATGGCATTTGCTGGGAATTGTGGTATTAATTTGGAATTGACTTCACACGGGAAGAGCCTCTTCCAAACAATCTTTTCTGAAGAGCTTGGTCTGATTATTGAGGTAAGCAAGAATAACTTAGATATGGTAATGGGAAAGCTAAGCAGTGGAGGTATTTCTGCAGAGATTATTGGACAGGTAACTGCCACACCTTCAATAGAATTAAAGGTGGATGGGGTAACTCACTTGAACGAAAGTACTTCTTTTGTAAGGGACATGTGGGAGGAAACTAGTTTTCAGCTGGAGAAGTTTCAGAGATTGGCTTCTTGTGTTGATTTAGAGAAAGATGGGTTGAAAGATAGGCATGAGCCTTCGTGGCAGTTGTCTTTTACTCCGTCCTTCACAGATGAAAAGTATATGACCGCAACCTCCAAACCGAAAGTGGCAGTTATTCGAGAAGAAGGAAGCAATGGGGATAGAGAAATGGCAGCGGCATTTTATGCGGCTGGCTTTGAACCATGGGATATTACAATGTCAGACCTTCTTAAAGGAAATGTATCACTGCAAGAGTTCCATGGAATTGTGTTTGTTGGAGGTTTTAGCTATGCTGATGTCCTTGATTCTGCAAAAGGCTGGTCTGCTTCAATTAGGTTTAATCAGCCCCTTCTAAATCAATTTCAGGAGTTTTACAAGAGGCACGACACTTTCAGTCTTGGGGTTTGCAATGGGTGTCAGCTTATGGCTCTTTTGGGGTGGGTCCCAGGTCCTCAAGTTGGGGGCGTGCATGGTGGTGGTGGGGATCCATCACAGCCGAGGTTCATTCACAATGAGTCGGGACGGTTTGAGTGCCGCTTTACTAGTGTAAAAATTACTGACTCACCATCTATAATGTTAAATGGAATGGAAGGCAGTACCTTGGGCGTGTGGGCTGCCCATGGTGAGGGAAGAGCCTATTTCCCTGATGATGGTGTTTTTGACCGTGTGCTCCACTCCAAGTTGGCTCCAGTAAGATATTGTGATGATGATGGGATTGAAACGGAGCTTTATCCCTTCAACCTGAATGGCTCTCCCTTAGGAGTTGCGGCAATTTGTTCACCAGATGGGAGGCATCTTGCCATGATGCCTCATCCAGAGCGCTGCTTCTTAATGTGGCAGTACCCATGGTATCCCAAGCAGTGGGATGTTGAAAAGAAAGGCCCTAGTCCATGGCTACGGATGTTCCAGAATGCCAGAGAGTGGTGCTCCAAAAATGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

1413

Amino Acids

154.02

Weight (kDa)

5.44

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGAR-AT_N	PF18076	124 - 242	5.9e-22	Formylglycinamide ribonucleotide amidotransferase N-terminal
FGAR-AT_linker	PF18072	268 - 317	5.3e-11	Formylglycinamide ribonucleotide amidotransferase linker domain
AIRS_C	PF02769	531 - 685	1.8e-27	AIR synthase related protein, C-terminal domain
FGAR-AT_PurM_N-like	PF22689	756 - 909	1.5e-51	FGAR-AT PurM_N-like domain
AIRS_C	PF02769	940 - 1070	5.2e-18	AIR synthase related protein, C-terminal domain
GATase_5	PF13507	1138 - 1407	2.7e-105	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74260
fragaria_vesca	FvH4_5g19530 FvH4_5g19530 FvH4_5g19530
malus_domestica	MD03G1203100.v1.1 MD04G1022300.v1.1
prunus_persica	Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1
pyrus_communis	pycom04g01890 pycom04g01930
rosa_chinensis	RchiOBHm_Chr7g0204141
rosa_laevigata	RLG00000003485
rosa_multiflora	Rmu_sc0001311.1_g000031
rosa_roxburghii	Rroxscaffold_3G00253310
rosa_rugosa	Rorug07G0081100 Rorug07G0081200 Rorug07G0081200
rosa_samantha	Rh7AG211000 Rh7BG209600 Rh7CG223500 Rh7DG217800
rosa_wichuraiana	Rw7G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	1853, 2176, 4155, 4215
AccI	GTMKAC	2 cut(s)	1148, 2292
AclWI	GGATC	8 cut(s)	666, 1339, 1390, 2099, 2438, 2451, 3773, 3786
AcoI	YGGCCR	3 cut(s)	46, 2805, 2956
AcsI	RAATTY	5 cut(s)	457, 969, 1375, 1439, 2346
AcuI	CTGAAG	4 cut(s)	419, 2255, 2921, 3099
AfaI	GTAC	8 cut(s)	629, 765, 1704, 2136, 2728, 3238, 3892, 4136
AfeI	AGCGCT	2 cut(s)	2273, 4115
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	3255
AhlI	ACTAGT	2 cut(s)	3269, 3836
AjnI	CCWGG	6 cut(s)	863, 1120, 1216, 2209, 2698, 3739
Alw21I	GWGCWC	3 cut(s)	1025, 3966, 4223
Alw26I	GTCTC	6 cut(s)	434, 574, 1175, 1220, 1480, 1498
AlwI	GGATC	8 cut(s)	666, 1339, 1390, 2099, 2438, 2451, 3773, 3786
AlwNI	CAGNNNCTG	2 cut(s)	61, 951
Ama87I	CYCGRG	1 cut(s)	1072
Aor51HI	AGCGCT	2 cut(s)	2273, 4115
ApoI	RAATTY	5 cut(s)	457, 969, 1375, 1439, 2346
ArsI	GACNNNNNNTTYG	2 cut(s)	3599, 3631
AseI	ATTAAT	3 cut(s)	669, 813, 3027
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	2 cut(s)	2274, 4116
AsuC2I	CCSGG	2 cut(s)	1871, 2389
AvaI	CYCGRG	1 cut(s)	1072
AvaII	GGWCC	6 cut(s)	77, 527, 751, 1156, 3736, 3743
AxyI	CCTNAGG	1 cut(s)	4051
BaeGI	GKGCMC	1 cut(s)	2995
BalI	TGGCCA	2 cut(s)	48, 2958
BamHI	GGATCC	2 cut(s)	2443, 3778
BanII	GRGCYC	2 cut(s)	387, 1452
BauI	CACGAG	1 cut(s)	2187
Bbv12I	GWGCWC	3 cut(s)	1025, 3966, 4223
BceAI	ACGGC	1 cut(s)	1447
BciT130I	CCWGG	6 cut(s)	865, 1122, 1218, 2211, 2700, 3741
BciVI	GTATCC	3 cut(s)	1377, 1457, 4155
BclI	TGATCA	1 cut(s)	2616
BcnI	CCSGG	2 cut(s)	1871, 2389
BcoDI	GTCTC	6 cut(s)	434, 574, 1175, 1220, 1480, 1498
BcuI	ACTAGT	2 cut(s)	3269, 3836
BfaI	CTAG	6 cut(s)	144, 402, 1470, 3270, 3837, 4179
BfmI	CTRYAG	4 cut(s)	1176, 1203, 2676, 3159
BfoI	RGCGCY	2 cut(s)	2275, 4117
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	3 cut(s)	1377, 1457, 4155
BglI	GCCNNNNNGGC	1 cut(s)	3355
BglII	AGATCT	1 cut(s)	847
BlpI	GCTNAGC	2 cut(s)	2062, 3140
BmcAI	AGTACT	2 cut(s)	2136, 3238
Bme1390I	CCNGG	8 cut(s)	865, 1122, 1218, 1871, 2211, 2389, 2700, 3741
Bme18I	GGWCC	6 cut(s)	77, 527, 751, 1156, 3736, 3743
BmeT110I	CYCGRG	1 cut(s)	1072
BmiI	GGNNCC	8 cut(s)	753, 1157, 2445, 2697, 3737, 3738, 3780, 3981
BmrFI	CCNGG	8 cut(s)	865, 1122, 1218, 1871, 2211, 2389, 2700, 3741
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BoxI	GACNNNNGTC	1 cut(s)	599
BplI	GAGNNNNNCTC	4 cut(s)	2466, 2498, 4205, 4237
BpmI	CTGGAG	3 cut(s)	2418, 3302, 3966
Bpu10I	CCTNAGC	2 cut(s)	174, 2844
Bpu1102I	GCTNAGC	2 cut(s)	2062, 3140
BpuEI	CTTGAG	4 cut(s)	2147, 2903, 3017, 3732
BpuMI	CCSGG	2 cut(s)	1871, 2389
BsaBI	GATNNNNATC	1 cut(s)	1865
BsaI	GGTCTC	1 cut(s)	1175
BsaXI	ACNNNNNCTCC	2 cut(s)	2673, 2703
Bse1I	ACTGG	7 cut(s)	98, 956, 967, 1112, 1270, 2401, 3983
Bse21I	CCTNAGG	1 cut(s)	4051
Bse3DI	GCAATG	7 cut(s)	690, 1136, 1828, 2460, 2586, 3454, 3709
Bse8I	GATNNNNATC	1 cut(s)	1865
BseBI	CCWGG	6 cut(s)	865, 1122, 1218, 2211, 2700, 3741
BseJI	GATNNNNATC	1 cut(s)	1865
BseMI	GCAATG	7 cut(s)	690, 1136, 1828, 2460, 2586, 3454, 3709
BseMII	CTCAG	6 cut(s)	270, 297, 354, 400, 2390, 2858
BseNI	ACTGG	7 cut(s)	98, 956, 967, 1112, 1270, 2401, 3983
BseRI	GAGGAG	2 cut(s)	821, 2088
BseSI	GKGCMC	1 cut(s)	2995
BseYI	CCCAGC	2 cut(s)	720, 3011
BsgI	GTGCAG	6 cut(s)	101, 344, 1254, 1557, 1941, 2595
BsiHKAI	GWGCWC	3 cut(s)	1025, 3966, 4223
BsiHKCI	CYCGRG	1 cut(s)	1072
BsiSI	CCGG	3 cut(s)	452, 1870, 2388
BslFI	GGGAC	7 cut(s)	124, 737, 1169, 1265, 3266, 3722, 3828
BsmAI	GTCTC	6 cut(s)	434, 574, 1175, 1220, 1480, 1498
BsmBI	CGTCTC	1 cut(s)	1498
BsmFI	GGGAC	7 cut(s)	124, 737, 1169, 1265, 3266, 3722, 3828
BsmI	GAATGC	1 cut(s)	4210
Bso31I	GGTCTC	1 cut(s)	1175
BsoBI	CYCGRG	1 cut(s)	1072
Bsp1286I	GDGCHC	6 cut(s)	387, 1025, 1452, 2995, 3966, 4223
Bsp1407I	TGTACA	1 cut(s)	1702
Bsp1720I	GCTNAGC	2 cut(s)	2062, 3140
Bsp19I	CCATGG	7 cut(s)	2007, 2661, 3497, 3553, 3913, 4139, 4184
BspCNI	CTCAG	6 cut(s)	269, 298, 355, 399, 2389, 2857
BspHI	TCATGA	2 cut(s)	691, 1795
BspLI	GGNNCC	8 cut(s)	753, 1157, 2445, 2697, 3737, 3738, 3780, 3981
BspMAI	CTGCAG	3 cut(s)	1180, 2680, 3163
BspPI	GGATC	8 cut(s)	666, 1339, 1390, 2099, 2438, 2451, 3773, 3786
BspQI	GCTCTTC	4 cut(s)	1013, 3047, 3075, 3919
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	1175
BsrDI	GCAATG	7 cut(s)	690, 1136, 1828, 2460, 2586, 3454, 3709
BsrGI	TGTACA	1 cut(s)	1702
BsrI	ACTGG	7 cut(s)	98, 956, 967, 1112, 1270, 2401, 3983
BssSI	CACGAG	1 cut(s)	2187
Bst2BI	CACGAG	1 cut(s)	2187
Bst2UI	CCWGG	6 cut(s)	865, 1122, 1218, 2211, 2700, 3741
Bst6I	CTCTTC	7 cut(s)	917, 1013, 2231, 3047, 3065, 3075, 3919
BstAFI	CTTAAG	1 cut(s)	422
BstAPI	GCANNNNNTGC	3 cut(s)	1295, 2672, 3479
BstAUI	TGTACA	1 cut(s)	1702
BstDSI	CCRYGG	7 cut(s)	2007, 2661, 3497, 3553, 3913, 4139, 4184
BstEII	GGTNACC	1 cut(s)	1775
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstH2I	RGCGCY	2 cut(s)	2275, 4117
BstHHI	GCGC	2 cut(s)	2274, 4116
BstMAI	GTCTC	6 cut(s)	434, 574, 1175, 1220, 1480, 1498
BstNI	CCWGG	6 cut(s)	865, 1122, 1218, 2211, 2700, 3741
BstNSI	RCATGY	4 cut(s)	1262, 1597, 2409, 3259
BstPAI	GACNNNNGTC	1 cut(s)	599
BstPI	GGTNACC	1 cut(s)	1775
BstSCI	CCNGG	8 cut(s)	863, 1120, 1216, 1869, 2209, 2387, 2698, 3739
BstSFI	CTRYAG	4 cut(s)	1176, 1203, 2676, 3159
BstSLI	GKGCMC	1 cut(s)	2995
BstX2I	RGATCY	5 cut(s)	847, 1331, 1395, 2443, 3778
BstXI	CCANNNNNNTGG	3 cut(s)	105, 350, 1808
BstYI	RGATCY	5 cut(s)	847, 1331, 1395, 2443, 3778
Bsu36I	CCTNAGG	1 cut(s)	4051
BsuI	GTATCC	3 cut(s)	1377, 1457, 4155
BtgI	CCRYGG	7 cut(s)	2007, 2661, 3497, 3553, 3913, 4139, 4184
BtsI	GCAGTG	5 cut(s)	113, 374, 3151, 3539, 4160
CaiI	CAGNNNCTG	2 cut(s)	61, 951
CciI	TCATGA	2 cut(s)	691, 1795
CfoI	GCGC	2 cut(s)	2274, 4116
CseI	GACGC	1 cut(s)	1688
Csp6I	GTAC	8 cut(s)	628, 764, 1703, 2135, 2727, 3237, 3891, 4135
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviQI	GTAC	8 cut(s)	628, 764, 1703, 2135, 2727, 3237, 3891, 4135
EaeI	YGGCCR	3 cut(s)	46, 2805, 2956
Eam1104I	CTCTTC	7 cut(s)	917, 1013, 2231, 3047, 3065, 3075, 3919
EarI	CTCTTC	7 cut(s)	917, 1013, 2231, 3047, 3065, 3075, 3919
EciI	GGCGGA	1 cut(s)	1827
Eco24I	GRGCYC	2 cut(s)	387, 1452
Eco31I	GGTCTC	1 cut(s)	1175
Eco32I	GATATC	3 cut(s)	883, 1867, 2965
Eco47I	GGWCC	6 cut(s)	77, 527, 751, 1156, 3736, 3743
Eco47III	AGCGCT	2 cut(s)	2273, 4115
Eco57I	CTGAAG	4 cut(s)	419, 2255, 2921, 3099
Eco81I	CCTNAGG	1 cut(s)	4051
Eco88I	CYCGRG	1 cut(s)	1072
Eco91I	GGTNACC	1 cut(s)	1775
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	8 cut(s)	58, 77, 1156, 1616, 2926, 3736, 3743, 4175
EcoO65I	GGTNACC	1 cut(s)	1775
EcoRII	CCWGG	6 cut(s)	863, 1120, 1216, 2209, 2698, 3739
EcoRV	GATATC	3 cut(s)	883, 1867, 2965
EcoT38I	GRGCYC	2 cut(s)	387, 1452
Esp3I	CGTCTC	1 cut(s)	1498
FaqI	GGGAC	7 cut(s)	124, 737, 1169, 1265, 3266, 3722, 3828
FauI	CCCGC	2 cut(s)	6, 123
FbaI	TGATCA	1 cut(s)	2616
FblI	GTMKAC	2 cut(s)	1148, 2292
FriOI	GRGCYC	2 cut(s)	387, 1452
FspBI	CTAG	6 cut(s)	144, 402, 1470, 3270, 3837, 4179
GlaI	GCGC	2 cut(s)	2273, 4115
GsaI	CCCAGC	2 cut(s)	724, 3015
GsuI	CTGGAG	3 cut(s)	2418, 3302, 3966
HaeII	RGCGCY	2 cut(s)	2275, 4117
HapII	CCGG	3 cut(s)	452, 1870, 2388
HgaI	GACGC	1 cut(s)	1688
HhaI	GCGC	2 cut(s)	2274, 4116
Hin6I	GCGC	2 cut(s)	2272, 4114
HinP1I	GCGC	2 cut(s)	2272, 4114
HincII	GTYRAC	2 cut(s)	469, 2394
HindII	GTYRAC	2 cut(s)	469, 2394
HindIII	AAGCTT	3 cut(s)	2158, 2558, 2768
HpaII	CCGG	3 cut(s)	452, 1870, 2388
Hpy166II	GTNNAC	7 cut(s)	32, 469, 715, 1149, 2293, 2394, 4073
Hpy8I	GTNNAC	7 cut(s)	32, 469, 715, 1149, 2293, 2394, 4073
HpyCH4IV	ACGT	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	302
HspAI	GCGC	2 cut(s)	2272, 4114
KflI	GGGWCCC	1 cut(s)	3736
Ksp22I	TGATCA	1 cut(s)	2616
LguI	GCTCTTC	4 cut(s)	1013, 3047, 3075, 3919
LmnI	GCTCC	9 cut(s)	1345, 1805, 2122, 2419, 2701, 3969, 3985, 4018, 4226
MaeI	CTAG	6 cut(s)	144, 402, 1470, 3270, 3837, 4179
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	9 cut(s)	139, 601, 647, 1775, 2302, 2506, 2752, 3178, 3217
MfeI	CAATTG	2 cut(s)	1103, 1875
MflI	RGATCY	5 cut(s)	847, 1331, 1395, 2443, 3778
MhlI	GDGCHC	6 cut(s)	387, 1025, 1452, 2995, 3966, 4223
MlsI	TGGCCA	2 cut(s)	48, 2958
MluNI	TGGCCA	2 cut(s)	48, 2958
MlyI	GAGTC	4 cut(s)	1482, 3818, 3848, 4226
MmeI	TCCRAC	7 cut(s)	773, 920, 954, 2344, 2421, 2452, 3550
Mox20I	TGGCCA	2 cut(s)	48, 2958
MroXI	GAANNNNTTC	1 cut(s)	154
MscI	TGGCCA	2 cut(s)	48, 2958
MslI	CAYNNNNRTG	4 cut(s)	163, 1763, 2222, 3768
Msp20I	TGGCCA	2 cut(s)	48, 2958
MspA1I	CMGCKG	4 cut(s)	191, 2173, 3280, 3470
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	3 cut(s)	452, 1870, 2388
MspR9I	CCNGG	8 cut(s)	865, 1122, 1218, 1871, 2211, 2389, 2700, 3741
MunI	CAATTG	2 cut(s)	1103, 1875
Mva1269I	GAATGC	1 cut(s)	4210
MvaI	CCWGG	6 cut(s)	865, 1122, 1218, 2211, 2700, 3741
NciI	CCSGG	2 cut(s)	1871, 2389
NcoI	CCATGG	7 cut(s)	2007, 2661, 3497, 3553, 3913, 4139, 4184
NlaIV	GGNNCC	8 cut(s)	753, 1157, 2445, 2697, 3737, 3738, 3780, 3981
NmeAIII	GCCGAG	1 cut(s)	3816
NmuCI	GTSAC	2 cut(s)	601, 2506
NspI	RCATGY	4 cut(s)	1262, 1597, 2409, 3259
PaeI	GCATGC	1 cut(s)	1597
PaeR7I	CTCGAG	1 cut(s)	1072
PagI	TCATGA	2 cut(s)	691, 1795
PasI	CCCWGGG	1 cut(s)	1217
PciI	ACATGT	1 cut(s)	3255
PciSI	GCTCTTC	4 cut(s)	1013, 3047, 3075, 3919
PcsI	WCGNNNNNNNCGW	1 cut(s)	1747
PctI	GAATGC	1 cut(s)	4210
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	8 cut(s)	286, 688, 892, 1245, 1315, 1352, 1456, 3599
PflMI	CCANNNNNTGG	4 cut(s)	1853, 2176, 4155, 4215
PfoI	TCCNGGA	1 cut(s)	2698
PleI	GAGTC	4 cut(s)	1482, 3817, 3848, 4226
PpsI	GAGTC	4 cut(s)	1482, 3817, 3848, 4226
PpuMI	RGGWCCY	4 cut(s)	77, 1156, 3736, 3743
PscI	ACATGT	1 cut(s)	3255
PshAI	GACNNNNGTC	1 cut(s)	599
PshBI	ATTAAT	3 cut(s)	669, 813, 3027
Psp5II	RGGWCCY	4 cut(s)	77, 1156, 3736, 3743
Psp6I	CCWGG	6 cut(s)	863, 1120, 1216, 2209, 2698, 3739
PspEI	GGTNACC	1 cut(s)	1775
PspFI	CCCAGC	2 cut(s)	720, 3011
PspGI	CCWGG	6 cut(s)	863, 1120, 1216, 2209, 2698, 3739
PspN4I	GGNNCC	8 cut(s)	753, 1157, 2445, 2697, 3737, 3738, 3780, 3981
PspPPI	RGGWCCY	4 cut(s)	77, 1156, 3736, 3743
PspXI	VCTCGAGB	1 cut(s)	1072
PstI	CTGCAG	3 cut(s)	1180, 2680, 3163
PstNI	CAGNNNCTG	2 cut(s)	61, 951
PsuI	RGATCY	5 cut(s)	847, 1331, 1395, 2443, 3778
PvuII	CAGCTG	2 cut(s)	191, 3280
RsaI	GTAC	8 cut(s)	629, 765, 1704, 2136, 2728, 3238, 3892, 4136
RsaNI	GTAC	8 cut(s)	628, 764, 1703, 2135, 2727, 3237, 3891, 4135
RseI	CAYNNNNRTG	4 cut(s)	163, 1763, 2222, 3768
SapI	GCTCTTC	4 cut(s)	1013, 3047, 3075, 3919
ScaI	AGTACT	2 cut(s)	2136, 3238
SchI	GAGTC	4 cut(s)	1482, 3818, 3848, 4226
ScrFI	CCNGG	8 cut(s)	865, 1122, 1218, 1871, 2211, 2389, 2700, 3741
SduI	GDGCHC	6 cut(s)	387, 1025, 1452, 2995, 3966, 4223
SfcI	CTRYAG	4 cut(s)	1176, 1203, 2676, 3159
Sfr274I	CTCGAG	1 cut(s)	1072
SinI	GGWCC	6 cut(s)	77, 527, 751, 1156, 3736, 3743
SlaI	CTCGAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	4 cut(s)	163, 1763, 2222, 3768
SmlI	CTYRAG	6 cut(s)	422, 1072, 2126, 2882, 2996, 3747
SmoI	CTYRAG	6 cut(s)	422, 1072, 2126, 2882, 2996, 3747
SpeI	ACTAGT	2 cut(s)	3269, 3836
SphI	GCATGC	1 cut(s)	1597
SspMI	CTAG	6 cut(s)	144, 402, 1470, 3270, 3837, 4179
StyD4I	CCNGG	8 cut(s)	863, 1120, 1216, 1869, 2209, 2387, 2698, 3739
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	5 cut(s)	338, 915, 1073, 2285, 3433
TatI	WGTACW	4 cut(s)	1702, 2134, 2726, 3236
TauI	GCSGC	8 cut(s)	591, 683, 2810, 2821, 3473, 3485, 3831, 4064
TfiI	GAWTC	8 cut(s)	286, 688, 892, 1245, 1315, 1352, 1456, 3599
TseFI	GTSAC	2 cut(s)	601, 2506
Tsp45I	GTSAC	2 cut(s)	601, 2506
TspDTI	ATGAA	6 cut(s)	147, 680, 1784, 2955, 3402, 3787
TspGWI	ACGGA	4 cut(s)	2883, 3363, 4031, 4207
Van91I	CCANNNNNTGG	4 cut(s)	1853, 2176, 4155, 4215
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	6 cut(s)	77, 527, 751, 1156, 3736, 3743
VspI	ATTAAT	3 cut(s)	669, 813, 3027
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	5 cut(s)	457, 969, 1375, 1439, 2346
XceI	RCATGY	4 cut(s)	1262, 1597, 2409, 3259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3418
XhoI	CTCGAG	1 cut(s)	1072
XmiI	GTMKAC	2 cut(s)	1148, 2292
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	6 cut(s)	144, 402, 1470, 3270, 3837, 4179
ZrmI	AGTACT	2 cut(s)	2136, 3238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.