pycom04g01890

phosphoribosylformylglycinamidine synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
1697194 .. 1698420
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01890.1

Sequence Viewer

Length: 1227 bp
ATGGCATTTTCTGGGAATTGTGGCATAACTTTGGACTTGACTTCACATGGGAAGGGCCTATTCCAAACGCTTTTTGCTGAAGAACTTGGTCTGGTTATTGAGGTAAGCCGGAATGACTTAGATTTGGTGTTGGAAAAACTGAGCAGTTACAATATTTTGGCTGAGAATATTGGTCAAGTAAGTGCCACACCCTCAGTAGAGTTAAAGGTTGATGGGGTTACACATTTGAATGAGAGTACTTCTTTTCTAAGGGACTTGTGGGAGGACACTAGTTTTCAGCTGGAAAGACTTCAAAGGTTGGCTTCTTGTGTGGATCTAGAAAAAGAAGGGTTGAAAGATAGGCATGAGCCCTCATGGGATTTGTCTTTCACTCCTTCTTTCACAGATGAAAAGTATATGACCATCGCTTGCAAACCAAAAGTGGCTATAATCCGAGAAGAAGGCAGCAATGGGGACAGAGAAATGTCGGCAGCATTTTATGCTTCTGGTTTTGAACCATGGGATGTTACAATGTCAGACCTTCTTAATGGAACCATTTCATTGCATGAATTCCGTGGAATTGCGTTTGTTGGAGGTTTTAGCTACGCCGATGTGCTTGATTCTGCAAAAGGTTGGTCTGCATCGATTCGATTTAATCAGCCCCTTCTAAATCAATTTCAAGAGTTTTACAAGCGGCCAGACACTTTTAGTCTTGGAGTTTGCAACGGGTGTCAGCTTATGGCCCTTTTGGGGTGGGTCCCGGGTCCTCAAGTTGGTGGTGTGCTAGGTGGTGGTGGGGACCCTTCGCAGCCCAGGTTCATTCACAACGAGTCTGGACGGTTTGAATGCCGATTCACCAGTGTGGCAATAAAGGACTCGCCAGCTATAATGTTTAAAGGAATGGAGGGCAGTACATTGGGTGTGTGGGCTGCACATGGTGAAGGAAGAGCATATTTCCCCGATGATGGTGTTCTTGATCGTTTGCTTCACTCAAAGTTGGCACCAGTAAGGTATTGCGATGATGATGGTAATGAGACAGAAGTTTACCCTTTCAACGTCAATGGCTCTCCCTTGGGGGTTGCAGCAATTTGTTCTCCAGATGGGAGGCATCTAGCCATGATGCCTCATCCAGAGCGTTGCTTCTTAATGTGGCAATTCCCCTGGTATCCCAAGCAATGGGATGTGGAAAAGAAAGGCCCTAGTCCCTGGTTGCGAATGTTCCAGAATGCTAGAGAGTGGTGTTCTTGA

Protein Analysis

409

Amino Acids

45.44

Weight (kDa)

4.94

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_5 PF13507 138 - 407 1e-106 CobB/CobQ-like glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 979
AccB7I CCANNNNNTGG 1 cut(s) 1155
AciI CCGC 1 cut(s) 673
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 917
AfaI GTAC 2 cut(s) 238, 892
AfiI CCNNNNNNNGG 4 cut(s) 729, 752, 944, 1155
AgsI TTSAA 7 cut(s) 229, 293, 334, 494, 659, 824, 1033
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 3 cut(s) 791, 1139, 1184
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 4 cut(s) 280, 582, 715, 863
AluI AGCT 4 cut(s) 280, 582, 715, 863
Alw26I GTCTC 1 cut(s) 1007
AlwI GGATC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 739
AoxI GGCC 4 cut(s) 55, 674, 720, 1174
ApeKI GCWGC 5 cut(s) 444, 470, 787, 908, 1061
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 2 cut(s) 288, 535
AspS9I GGNCC 6 cut(s) 55, 721, 736, 743, 778, 1175
AsuC2I CCSGG 2 cut(s) 740, 741
AsuHPI GGTGA 2 cut(s) 826, 929
AvaI CYCGRG 1 cut(s) 739
AvaII GGWCC 3 cut(s) 736, 743, 778
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 456, 482, 799, 895, 1073
BccI CCATC 5 cut(s) 206, 410, 938, 998, 1073
BciT130I CCWGG 3 cut(s) 793, 1141, 1186
BciVI GTATCC 1 cut(s) 1155
BcnI CCSGG 2 cut(s) 740, 741
BcoDI GTCTC 1 cut(s) 1007
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 6 cut(s) 270, 317, 764, 1091, 1179, 1209
BfuI GTATCC 1 cut(s) 1155
BisI GCNGC 6 cut(s) 445, 471, 674, 788, 909, 1062
BlsI GCNGC 6 cut(s) 446, 472, 675, 789, 910, 1063
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 5 cut(s) 740, 741, 793, 1141, 1186
Bme18I GGWCC 3 cut(s) 736, 743, 778
BmeT110I CYCGRG 1 cut(s) 739
BmgT120I GGNCC 6 cut(s) 55, 721, 736, 743, 778, 1175
BmiI GGNNCC 7 cut(s) 532, 737, 738, 744, 779, 780, 981
BmrFI CCNGG 5 cut(s) 740, 741, 793, 1141, 1186
BmsI GCATC 3 cut(s) 629, 1089, 1096
BpmI CTGGAG 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 732
BpuMI CCSGG 2 cut(s) 740, 741
Bsa29I ATCGAT 1 cut(s) 623
BsaJI CCNNGG 7 cut(s) 497, 553, 739, 791, 1050, 1139, 1184
Bsc4I CCNNNNNNNGG 4 cut(s) 729, 752, 944, 1155
Bse1I ACTGG 2 cut(s) 837, 983
Bse3DI GCAATG 3 cut(s) 454, 539, 1160
BseBI CCWGG 3 cut(s) 793, 1141, 1186
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 7 cut(s) 497, 553, 739, 791, 1050, 1139, 1184
BseGI GGATG 3 cut(s) 508, 1105, 1165
BseLI CCNNNNNNNGG 4 cut(s) 729, 752, 944, 1155
BseMI GCAATG 3 cut(s) 454, 539, 1160
BseMII CTCAG 3 cut(s) 131, 153, 207
BseNI ACTGG 2 cut(s) 837, 983
BseXI GCAGC 5 cut(s) 456, 482, 799, 895, 1073
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 4 cut(s) 57, 676, 722, 1176
BshNI GGYRCC 1 cut(s) 979
BshVI ATCGAT 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 739
BsiSI CCGG 2 cut(s) 109, 740
BslFI GGGAC 5 cut(s) 266, 467, 722, 791, 1167
BslI CCNNNNNNNGG 4 cut(s) 729, 752, 944, 1155
BsmAI GTCTC 1 cut(s) 1007
BsmFI GGGAC 5 cut(s) 266, 467, 722, 791, 1167
BsmI GAATGC 2 cut(s) 830, 1210
BsnI GGCC 4 cut(s) 57, 676, 722, 1176
BsoBI CYCGRG 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 313, 955
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 1 cut(s) 673
BspANI GGCC 4 cut(s) 57, 676, 722, 1176
BspCNI CTCAG 3 cut(s) 132, 154, 206
BspDI ATCGAT 1 cut(s) 623
BspLI GGNNCC 7 cut(s) 532, 737, 738, 744, 779, 780, 981
BspPI GGATC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 979
BsrDI GCAATG 3 cut(s) 454, 539, 1160
BsrI ACTGG 2 cut(s) 837, 983
BssECI CCNNGG 7 cut(s) 497, 553, 739, 791, 1050, 1139, 1184
BssMI GATC 2 cut(s) 313, 955
BssT1I CCWWGG 2 cut(s) 497, 1050
Bst2UI CCWGG 3 cut(s) 793, 1141, 1186
Bst4CI ACNGT 1 cut(s) 819
Bst6I CTCTTC 1 cut(s) 919
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 409, 861
BstDEI CTNAG 5 cut(s) 118, 140, 162, 193, 248
BstDSI CCRYGG 2 cut(s) 497, 553
BstF5I GGATG 3 cut(s) 508, 1105, 1165
BstKTI GATC 2 cut(s) 316, 958
BstMAI GTCTC 1 cut(s) 1007
BstMBI GATC 2 cut(s) 313, 955
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 3 cut(s) 793, 1141, 1186
BstSCI CCNGG 5 cut(s) 738, 739, 791, 1139, 1184
BstV1I GCAGC 5 cut(s) 456, 482, 799, 895, 1073
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 623
BsuI GTATCC 1 cut(s) 1155
BsuRI GGCC 4 cut(s) 57, 676, 722, 1176
BsuTUI ATCGAT 1 cut(s) 623
BtgI CCRYGG 2 cut(s) 497, 553
BtgZI GCGATG 2 cut(s) 388, 1011
BtsCI GGATG 3 cut(s) 508, 1105, 1165
BtsIMutI CAGTG 1 cut(s) 844
Cac8I GCNNGC 2 cut(s) 409, 861
Cfr13I GGNCC 6 cut(s) 55, 721, 736, 743, 778, 1175
Cfr9I CCCGGG 1 cut(s) 739
ClaI ATCGAT 1 cut(s) 623
Csp6I GTAC 2 cut(s) 237, 891
CviAII CATG 7 cut(s) 47, 344, 354, 498, 545, 914, 1096
CviQI GTAC 2 cut(s) 237, 891
DdeI CTNAG 5 cut(s) 118, 140, 162, 193, 248
DpnI GATC 2 cut(s) 315, 957
DpnII GATC 2 cut(s) 313, 955
DraI TTTAAA 1 cut(s) 874
DraIII CACNNNGTG 1 cut(s) 917
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 919
Eco130I CCWWGG 2 cut(s) 497, 1050
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 3 cut(s) 736, 743, 778
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 739
EcoO109I RGGNCCY 5 cut(s) 55, 736, 743, 778, 1175
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 791, 1139, 1184
EcoT14I CCWWGG 2 cut(s) 497, 1050
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 497, 1050
FaeI CATG 7 cut(s) 50, 347, 357, 501, 548, 917, 1099
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 5 cut(s) 266, 467, 722, 791, 1167
FatI CATG 7 cut(s) 46, 343, 353, 497, 544, 913, 1095
Fnu4HI GCNGC 6 cut(s) 445, 471, 674, 788, 909, 1062
FokI GGATG 3 cut(s) 515, 1092, 1172
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 6 cut(s) 445, 471, 674, 788, 909, 1062
FspBI CTAG 6 cut(s) 270, 317, 764, 1091, 1179, 1209
GluI GCNGC 6 cut(s) 445, 471, 674, 788, 909, 1062
GsuI CTGGAG 1 cut(s) 1059
HaeIII GGCC 4 cut(s) 57, 676, 722, 1176
HapII CCGG 2 cut(s) 109, 740
Hin1II CATG 7 cut(s) 50, 347, 357, 501, 548, 917, 1099
HinfI GANTC 5 cut(s) 599, 625, 809, 831, 854
HpaII CCGG 2 cut(s) 109, 740
HphI GGTGA 2 cut(s) 826, 929
Hpy166II GTNNAC 1 cut(s) 1024
Hpy188I TCNGA 2 cut(s) 434, 517
Hpy188III TCNNGA 8 cut(s) 317, 659, 813, 953, 1076, 1109, 1201, 1224
Hpy8I GTNNAC 1 cut(s) 1024
HpyAV CCTTC 8 cut(s) 46, 320, 384, 434, 530, 653, 792, 914
HpyCH4III ACNGT 1 cut(s) 819
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 7 cut(s) 411, 544, 605, 620, 702, 911, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 5 cut(s) 118, 140, 162, 193, 248
HpySE526I ACGT 1 cut(s) 1035
Hsp92II CATG 7 cut(s) 50, 347, 357, 501, 548, 917, 1099
KflI GGGWCCC 2 cut(s) 736, 778
Kzo9I GATC 2 cut(s) 313, 955
LguI GCTCTTC 1 cut(s) 919
Lsp1109I GCAGC 5 cut(s) 456, 482, 799, 895, 1073
LweI GCATC 3 cut(s) 629, 1089, 1096
MaeI CTAG 6 cut(s) 270, 317, 764, 1091, 1179, 1209
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 3 cut(s) 146, 217, 505
MalI GATC 2 cut(s) 315, 957
MboI GATC 2 cut(s) 313, 955
MboII GAAGA 3 cut(s) 92, 449, 936
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 6 cut(s) 16, 548, 558, 653, 1065, 1133
MlyI GAGTC 2 cut(s) 818, 848
MmeI TCCRAC 2 cut(s) 111, 550
MnlI CCTC 9 cut(s) 94, 202, 256, 361, 566, 756, 877, 1077, 1113
MroXI GAANNNNTTC 2 cut(s) 288, 535
MseI TTAA 5 cut(s) 203, 525, 633, 873, 1124
MslI CAYNNNNRTG 2 cut(s) 228, 839
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 2 cut(s) 109, 740
MspR9I CCNGG 5 cut(s) 740, 741, 793, 1141, 1186
Mva1269I GAATGC 2 cut(s) 830, 1210
MvaI CCWGG 3 cut(s) 793, 1141, 1186
MwoI GCNNNNNNNGC 1 cut(s) 479
NciI CCSGG 2 cut(s) 740, 741
NcoI CCATGG 1 cut(s) 497
NdeII GATC 2 cut(s) 313, 955
NlaIII CATG 7 cut(s) 50, 347, 357, 501, 548, 917, 1099
NlaIV GGNNCC 7 cut(s) 532, 737, 738, 744, 779, 780, 981
OliI CACNNNNGTG 1 cut(s) 839
PciSI GCTCTTC 1 cut(s) 919
PctI GAATGC 2 cut(s) 830, 1210
PdmI GAANNNNTTC 2 cut(s) 288, 535
PfeI GAWTC 3 cut(s) 599, 625, 831
PflMI CCANNNNNTGG 1 cut(s) 1155
PkrI GCNGC 6 cut(s) 446, 472, 675, 789, 910, 1063
PleI GAGTC 2 cut(s) 817, 848
PpsI GAGTC 2 cut(s) 817, 848
PpuMI RGGWCCY 3 cut(s) 736, 743, 778
Psp5II RGGWCCY 3 cut(s) 736, 743, 778
Psp6I CCWGG 3 cut(s) 791, 1139, 1184
PspGI CCWGG 3 cut(s) 791, 1139, 1184
PspN4I GGNNCC 7 cut(s) 532, 737, 738, 744, 779, 780, 981
PspPI GGNCC 6 cut(s) 55, 721, 736, 743, 778, 1175
PspPPI RGGWCCY 3 cut(s) 736, 743, 778
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 238, 892
RsaNI GTAC 2 cut(s) 237, 891
RseI CAYNNNNRTG 2 cut(s) 228, 839
SapI GCTCTTC 1 cut(s) 919
SaqAI TTAA 5 cut(s) 203, 525, 633, 873, 1124
SatI GCNGC 6 cut(s) 445, 471, 674, 788, 909, 1062
Sau3AI GATC 2 cut(s) 313, 955
Sau96I GGNCC 6 cut(s) 55, 721, 736, 743, 778, 1175
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 2 cut(s) 818, 848
ScrFI CCNGG 5 cut(s) 740, 741, 793, 1141, 1186
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 3 cut(s) 629, 1089, 1096
SinI GGWCC 3 cut(s) 736, 743, 778
SmaI CCCGGG 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 228, 839
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 6 cut(s) 16, 548, 558, 653, 1065, 1133
SsiI CCGC 1 cut(s) 673
SspI AATATT 2 cut(s) 154, 169
SspMI CTAG 6 cut(s) 270, 317, 764, 1091, 1179, 1209
StyD4I CCNGG 5 cut(s) 738, 739, 791, 1139, 1184
StyI CCWWGG 2 cut(s) 497, 1050
TaaI ACNGT 1 cut(s) 819
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 2 cut(s) 623, 628
TasI AATT 6 cut(s) 16, 548, 558, 653, 1065, 1133
TatI WGTACW 2 cut(s) 236, 890
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 3 cut(s) 599, 625, 831
Tru1I TTAA 5 cut(s) 203, 525, 633, 873, 1124
Tru9I TTAA 5 cut(s) 203, 525, 633, 873, 1124
TscAI CASTG 1 cut(s) 844
TseI GCWGC 5 cut(s) 444, 470, 787, 908, 1061
TspDTI ATGAA 4 cut(s) 402, 528, 561, 787
TspGWI ACGGA 1 cut(s) 542
TspMI CCCGGG 1 cut(s) 739
TspRI CASTG 1 cut(s) 844
Van91I CCANNNNNTGG 1 cut(s) 1155
VpaK11BI GGWCC 3 cut(s) 736, 743, 778
XapI RAATTY 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 739
XmnI GAANNNNTTC 2 cut(s) 288, 535
XspI CTAG 6 cut(s) 270, 317, 764, 1091, 1179, 1209
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.