Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005762

Physical Location & Seq

Genomic Coordinates Forward (+)

19375835 .. 19382139

Gene Structure 6305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG211000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4353 bp

ATGTTAGTGATCAAACAGATGATTAGTTCTTACTGTAGGTGTGTTTGTTTCATTGGAAAAACAGATTGTAATTCAATTTATTTGGATTTTCTTTGGTTCTTGAAGGTTGAGGAGATGGCTGGTGTTCGGGAGATCACTGCTGGTGAATTCATAAAAGGTGGCCATAAACAGGGCCTGTTTTCTCACAGAGGTGCTTTGAAAGGAAGAAGCCCTATGCTTTGGGGCACGCTGCACAGTTCAGTGCGGGGTTCTGCCAATAGGAGAAATGCTTCATTGAGATGTCGTGCTCAAGAGAAGCCCACAGCTGTTGTTTCGGCTGTCAGCAGTTCGGTGGAGGCGCTACCGACTGTGGTTGAGAAGCCTTCTTCCTCAGTTATCCATTTTTATCGTGTCCCTCTCATTCAGGAGAGTGCAACGTCTGAGCTTCTCAAAACTGTGCAGTCAAAGATTTCGAGCCAGATAGTTGGTTTGAAAACTGAGCAGTGTTTCAACATTGGGCTCATTTCACAGCTTTCTAGTGACAAGCTTTCAGTGCTTAACTGGCTTCTTCAGGAGACTTATGAGCCGGAGAATTTGGGGGTCGACAGCTTTCTTGAAAAGAAGAGGCAGGAAGGGCTGAACACAGTTATTGTTGAGGTTGGTCCTCGGTTGTCGTTTACAACAGCGTGGTCTTCCAATGCTGTCTCGATATGTAGAGCTTGTGGCTTGACAGAGGTGACTCGTTTGGAACGGTCGAGGAGGTACTTGTTGTTTAGTAAGGGAAACTTGCAGGATCAACAGATTAATGAGTTTGCTGCAATGGTTCATGATCGGATGACGGAGTGTGTTTACACCCAGCAGCTCACTTCTTTTGAAACAAGTTTGGTTCCCGACAAAGTACGCCATATTCCCGTCATGGAGAGAGGTCGGAAGGCGTTAGAGGAGATTAATCAGGAAATGGGTTTGGCATTTGATGAGCAAGATCTCCAATACTACACCAGGCTATTCAAGGAAGAGATCAAGCGGAATCCAACAACAGTTGAACTCTTTGATATTGCACAGTCCAACAGTGAGCATAGCAGGCACTGGTTTTTTACTGGTAAAATTTTTATAGATGGACAGCCCATGGACAAAACTCTAATGCAAATTGTGAAGAGCACTTTGCAAGCAAACCCAAACAATTCTGTCATTGGGTTTAAGGACAACTCGAGTGCAATCAGAGGATTTCTTGTGAAGCAATTGCGACCGGTTCAGCCAGGTTCAACATCTCCATTGCACATGTCTGCACGTGACCTTGATATATTATTTACTGCAGAGACCCATAATTTTCCATGTGCTGTAGCACCTTACCCTGGTGCAGAGACAGGTGCAGGAGGTAGAATCAGAGACACCCATGCAACTGGAAGGGGCTCTTTTGTGGTAGCATCTACTGCTGGTTATTGTGTCGGAAATCTCAATATGGAAGGATCTTATGCTCCTTGGGAAGATCCGTCTTTCCTGTATCCATCAAATTTGGCCTCACCTTTGCAGATCCTCATAGATGCTAGTAATGGTGCATCAGACTACGGCAACAAATTTGGTGAGCCCTTGATTCAGGGCTACACTAGAACCTTTGGAATGAGACTCCCAAGTGGTGAGAGGCGGGAATGGTTGAAGCCAATCATGTTCAGTGCAGGAATTGGACAGATTGATCACACCCATATAACAAAGGGAGAGCCTGATATTGGCATGCTAGTTGTAAAGATTGGAGGCCCTGCTTATCGTATTGGTATGGGTGGTGGGGCTGCATCGAGCATGGTTAGTGGCCAAAATGATGCGGAGCTTGATTTCAATGCTGTACAGCGTGGGGATGCAGAGATGGCACAAAAATTGTATCGTGTTGTTCGTGCCTGCATTGAGATGGGGGAGAGTAACCCAATCATTAGCATTCATGACCAAGGAGCTGGTGGAAACTGCAACGTGGTTAAGGAAATTATTTATCCGAAGGGTGGTGAGATTGATATCCGGGCAATTGTGGTTGGTGATTACACAATGTCTGTCTTGGAGATATGGGGCGCAGAATATCAGGAACAAGATGCTATCTTGGTTAAACCTGAAAGTCGCGAACTTTTGCAATCAATATGTGAAAGAGAAAGGTGTTCTATGGCAGTTATTGGAACAATAAATGGTGAGGGACGTATTGTTTTAATTGATAGCTTAGCTATTGAAAAATCTAAATCAAGTGGCCTCCCTCCACCTGATCCTGCTGTCGATTTGGAGCTTGAGAAAGTACTTGGTGATATGCCACAAAAAAGCTTTAAATTCGAGCGGATGGCAGATGCACGAGAGCCACTTGATATCGCCCCTGGAATCACAGTAATGGATGCTCTTAAGAGAGTTTTAAGACTTCCATCCATCTGTTCAAAGCGCTTCTTGACCTCGAAAGTAGACAGGTGTGTTACAGGTCTGGTAGCTCAGCAGCAAACTGTCGGGCCCCTGCAAATTCCTCTCTCTGATGTTGGAGTAATTGCTCAGACTTTTACCGGCTTGACTGGAGGTGCATGTGCCATTGGGGAGCAGCCAATCAAAGGTTTGTTGGATCCAAAAGCAATGGCTAGATTGGCAGTTGGAGAAGCACTCACAAATCTTGTTTGGGCAAAGGTCACTTCTCTATCTGATGTTAAAGCAAGTGGGAATTGGATGTATGCAGCCAAGCTTGATGGTGAAGGAGCAGCCATGTATGATGCTGCTAATGCTCTTTCAGAGGCGATGATCAAACTTGGTATTGCTATTGATGGGGGAAAGGACAGTCTTTCCATGGCAGCCCATGCTGCAGGAGAAGTTGTCAAGGCTCCTGGAAATCTTGTAATCAGTGTTTATTGTACTTGTCCTGACATAACAAAAACAGTAACCCCAGATTTGACGCTTGGAGATGATGGTGTTCTGCTTCACATTGATTTGGCCGCAGGAAAGCGGCGATTAGGTGGCTCTGCTCTTGCTCAGGTTTTTGACCAGATTGGGAACGATTGTCCTGACCTTGAGGATGTTCCGTATCTGAGGCGAGTGTTTGAGGGAGTTCAAGGCCTTCTTGATGATGAACTGATCTCTTCTGGCCATGATATCAGTGATGGTGGGCTTCTGGTCTGCGCCCTTGAGATGGCATTTGCTGGCAATCGTGGCATTAATTTGGACTTGACTACGCACCGGAAAAGCCTCTTCCAAACAATTTTTTCTGAAGAGCTTGGTCTGGTTATTGAGGTCAGCAAGAAAAACTTAGATATGGTAATAGGAAAGCTAAGCAGTGGAGGTATTTCTGCAGAGATTATTGGACAGGTAACTGCCACACCTTCAATAGTGTTAAAGGTGGATGGGGTAACTCATTTGAACGAAAGTACTTATTTTGTAAGGGACATGTGGGAGGATACTAGTTTTCAGCTGGAAAAATTTCAGAGATTGGCTTCTTGTGTTGATCTAGAGAAAGAAGGGTTGAAAGATAGGCATGAGCCTTCATGGAAGTTGTCTTTTACTCCATCCTTCACAGATGAAAAGTATATGACCACGACCTCCAAACCGAAGGTGGCTGTTATTCGAGAAGAAGGAAGCAATGGGGATAGAGAAATGGCTGCGGCATTTTATGCTGCTGGCTTTGAGCCATGGGATATTACAATGTCAGACCTTCTTAATGGAGCTGTATCACTGCAAGAGTTCCGTGGAATTGTGTTTGTTGGAGGTTTTAGCTATGCTGATGTCCTTGATTCTGCAAAAGGTTGGTCTGCTTCAATTAGATTTAATCAGCCCCTTCTAAATCAATTTCAGGAGTTTTACAAGAGGCACGACACTTTCAGTCTTGGCGTTTGCAATGGGTGTCAGCTTATGGCTCTTTTGGGCTGGGTCCCAGGTCCTCAAGTTGGGGGCGTGCATGGTGGTGGTGGGGATCCATCACAGCCGAGGTTCATTCACAATGAGTCAGGCCGGTTTGAGTGTCGCTTTACTAGTGTAAAAATTGAGGACTCACCTTCTATAATGTTAAAAGGAATGGAAGGCAGTACTTTGGGCGTGTGGGCTGCCCATGGTGAGGGAAGAGCCTATTTTCCTGATGATGGTGTTTTTGATCGTGTGCTCCACTCCAAGTTGGCTCCAGTAAGATATTGTGATGATGATGGGATTGAAACGGAACTTTATCCCTTCAACCTGAATGGCTCTCCCTTGGGAGTTGCGGCAATTTGTTCACCAGATGGGAGGCATCTTGCCATGATGCCTCATCCAGAGCGCTGCTTCTTAATGTGGCAGTACCCATGGTATCCCAAGCAGTGGGATGTTGAAAAGAAAGGCCCTAGTCCATGGATACGGATGTTCCAGAATGCCAGAGAGTGGTGCTCCAGAAATGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

1450

Amino Acids

158.94

Weight (kDa)

5.55

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGAR-AT_N	PF18076	163 - 280	3.2e-21	Formylglycinamide ribonucleotide amidotransferase N-terminal
FGAR-AT_linker	PF18072	306 - 355	5e-11	Formylglycinamide ribonucleotide amidotransferase linker domain
AIRS_C	PF02769	569 - 723	1.9e-27	AIR synthase related protein, C-terminal domain
FGAR-AT_PurM_N-like	PF22689	794 - 947	2.1e-52	FGAR-AT PurM_N-like domain
AIRS_C	PF02769	978 - 1108	2.5e-17	AIR synthase related protein, C-terminal domain
GATase_5	PF13507	1176 - 1445	2.1e-105	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74260
fragaria_vesca	FvH4_5g19530 FvH4_5g19530 FvH4_5g19530
malus_domestica	MD03G1203100.v1.1 MD04G1022300.v1.1
prunus_persica	Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1
pyrus_communis	pycom04g01890 pycom04g01930
rosa_chinensis	RchiOBHm_Chr7g0204141
rosa_laevigata	RLG00000003485
rosa_multiflora	Rmu_sc0001311.1_g000031
rosa_roxburghii	Rroxscaffold_3G00253310
rosa_rugosa	Rorug07G0081100 Rorug07G0081200 Rorug07G0081200
rosa_samantha	Rh7AG211000 Rh7BG209600 Rh7CG223500 Rh7DG217800
rosa_wichuraiana	Rw7G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	4269, 4329
AccBSI	CCGCTC	1 cut(s)	2287
AccI	GTMKAC	2 cut(s)	582, 2406
AccII	CGCG	1 cut(s)	2082
AciI	CCGC	9 cut(s)	244, 1003, 1621, 1796, 2287, 2922, 2932, 3584, 4175
AclWI	GGATC	9 cut(s)	780, 1453, 1460, 1504, 2213, 2552, 2565, 3887, 3900
AcoI	YGGCCR	4 cut(s)	160, 1783, 2919, 3070
AcsI	RAATTY	8 cut(s)	146, 571, 1083, 1489, 1553, 2279, 2460, 3401
AcuI	CTGAAG	2 cut(s)	533, 3213
AcvI	CACGTG	1 cut(s)	1268
AfaI	GTAC	8 cut(s)	743, 879, 1818, 2250, 2842, 3352, 4006, 4250
AfeI	AGCGCT	2 cut(s)	2387, 4229
AflII	CTTAAG	1 cut(s)	2348
AflIII	ACRYGT	2 cut(s)	1257, 3369
AgeI	ACCGGT	1 cut(s)	1225
AhlI	ACTAGT	2 cut(s)	3383, 3950
AjnI	CCWGG	6 cut(s)	977, 1234, 1330, 2323, 2812, 3853
AleI	CACNNNNGTG	1 cut(s)	189
Alw21I	GWGCWC	4 cut(s)	289, 1139, 4080, 4337
Alw26I	GTCTC	6 cut(s)	548, 688, 1289, 1334, 1359, 1594
AlwI	GGATC	9 cut(s)	780, 1453, 1460, 1504, 2213, 2552, 2565, 3887, 3900
AlwNI	CAGNNNCTG	2 cut(s)	175, 1065
Ama87I	CYCGRG	1 cut(s)	1186
Aor51HI	AGCGCT	2 cut(s)	2387, 4229
ApaI	GGGCCC	1 cut(s)	2454
ApoI	RAATTY	8 cut(s)	146, 571, 1083, 1489, 1553, 2279, 2460, 3401
ArsI	GACNNNNNNTTYG	2 cut(s)	3713, 3745
AseI	ATTAAT	3 cut(s)	783, 927, 3141
AsiGI	ACCGGT	1 cut(s)	1225
Asp700I	GAANNNNTTC	2 cut(s)	268, 3402
AspLEI	GCGC	5 cut(s)	340, 2036, 2388, 3107, 4230
AspS9I	GGNCC	8 cut(s)	172, 641, 1730, 2450, 2451, 3850, 3857, 4289
AsuC2I	CCSGG	1 cut(s)	1985
AvaI	CYCGRG	1 cut(s)	1186
AvaII	GGWCC	3 cut(s)	641, 3850, 3857
BaeGI	GKGCMC	2 cut(s)	227, 2454
BaeI	ACNNNNGTAYC	2 cut(s)	4295, 4328
BalI	TGGCCA	3 cut(s)	162, 1785, 3072
BamHI	GGATCC	2 cut(s)	2557, 3892
BanII	GRGCYC	4 cut(s)	501, 1391, 1566, 2454
BauI	CACGAG	1 cut(s)	2301
BbrPI	CACGTG	1 cut(s)	1268
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	4 cut(s)	289, 1139, 4080, 4337
BceAI	ACGGC	1 cut(s)	1561
BciT130I	CCWGG	6 cut(s)	979, 1236, 1332, 2325, 2814, 3855
BciVI	GTATCC	4 cut(s)	1491, 3373, 4269, 4296
BclI	TGATCA	3 cut(s)	9, 1669, 2730
BcnI	CCSGG	1 cut(s)	1985
BcoDI	GTCTC	6 cut(s)	548, 688, 1289, 1334, 1359, 1594
BcuI	ACTAGT	2 cut(s)	3383, 3950
BfaI	CTAG	9 cut(s)	516, 1524, 1584, 1712, 2574, 3384, 3431, 3951, 4293
BfmI	CTRYAG	5 cut(s)	34, 1290, 1317, 2790, 3273
BfoI	RGCGCY	3 cut(s)	341, 2389, 4231
BfrI	CTTAAG	1 cut(s)	2348
BfuI	GTATCC	4 cut(s)	1491, 3373, 4269, 4296
BglII	AGATCT	1 cut(s)	961
BlpI	GCTNAGC	3 cut(s)	2176, 2433, 3254
BmcAI	AGTACT	3 cut(s)	2250, 3352, 4006
Bme1390I	CCNGG	7 cut(s)	979, 1236, 1332, 1985, 2325, 2814, 3855
Bme18I	GGWCC	3 cut(s)	641, 3850, 3857
BmeT110I	CYCGRG	1 cut(s)	1186
BmgT120I	GGNCC	8 cut(s)	172, 641, 1730, 2450, 2451, 3850, 3857, 4289
BmiI	GGNNCC	9 cut(s)	867, 2452, 2453, 2559, 2811, 3851, 3852, 3894, 4095
BmrFI	CCNGG	7 cut(s)	979, 1236, 1332, 1985, 2325, 2814, 3855
BpiI	GAAGAC	1 cut(s)	663
BplI	GAGNNNNNCTC	4 cut(s)	2580, 2612, 4319, 4351
BpmI	CTGGAG	3 cut(s)	2532, 4080, 4321
Bpu10I	CCTNAGC	1 cut(s)	2958
Bpu1102I	GCTNAGC	3 cut(s)	2176, 2433, 3254
BpuEI	CTTGAG	5 cut(s)	273, 2261, 3017, 3131, 3846
BpuMI	CCSGG	1 cut(s)	1985
BsaAI	YACGTR	1 cut(s)	1268
BsaBI	GATNNNNATC	1 cut(s)	1979
BsaI	GGTCTC	1 cut(s)	1289
BsaWI	WCCGGW	2 cut(s)	1225, 3162
BsaXI	ACNNNNNCTCC	2 cut(s)	2787, 2817
Bse118I	RCCGGY	3 cut(s)	1225, 2501, 3930
Bse1I	ACTGG	6 cut(s)	545, 1070, 1081, 1384, 2515, 4097
Bse3DI	GCAATG	5 cut(s)	804, 1250, 2574, 3568, 3823
Bse8I	GATNNNNATC	1 cut(s)	1979
BseBI	CCWGG	6 cut(s)	979, 1236, 1332, 2325, 2814, 3855
BseJI	GATNNNNATC	1 cut(s)	1979
BseMI	GCAATG	5 cut(s)	804, 1250, 2574, 3568, 3823
BseMII	CTCAG	7 cut(s)	384, 411, 468, 2447, 2504, 2972, 3005
BseNI	ACTGG	6 cut(s)	545, 1070, 1081, 1384, 2515, 4097
BseRI	GAGGAG	3 cut(s)	125, 751, 935
BseSI	GKGCMC	2 cut(s)	227, 2454
BseYI	CCCAGC	2 cut(s)	834, 3846
BsgI	GTGCAG	6 cut(s)	215, 458, 1248, 1356, 1368, 1671
Bsh1236I	CGCG	1 cut(s)	2082
Bsh1285I	CGRYCG	2 cut(s)	734, 1226
BshTI	ACCGGT	1 cut(s)	1225
BsiEI	CGRYCG	2 cut(s)	734, 1226
BsiHKAI	GWGCWC	4 cut(s)	289, 1139, 4080, 4337
BsiHKCI	CYCGRG	1 cut(s)	1186
BsiSI	CCGG	6 cut(s)	566, 1226, 1984, 2502, 3163, 3931
BslFI	GGGAC	4 cut(s)	377, 2166, 3380, 3836
BsmAI	GTCTC	6 cut(s)	548, 688, 1289, 1334, 1359, 1594
BsmFI	GGGAC	4 cut(s)	377, 2166, 3380, 3836
BsmI	GAATGC	2 cut(s)	1905, 4324
Bso31I	GGTCTC	1 cut(s)	1289
BsoBI	CYCGRG	1 cut(s)	1186
Bsp120I	GGGCCC	1 cut(s)	2450
Bsp1286I	GDGCHC	9 cut(s)	227, 289, 501, 1139, 1391, 1566, 2454, 4080, 4337
Bsp1407I	TGTACA	1 cut(s)	1816
Bsp1720I	GCTNAGC	3 cut(s)	2176, 2433, 3254
Bsp19I	CCATGG	6 cut(s)	1104, 2775, 3611, 4027, 4253, 4298
Bsp68I	TCGCGA	1 cut(s)	2082
BspACI	CCGC	9 cut(s)	244, 1003, 1621, 1796, 2287, 2922, 2932, 3584, 4175
BspCNI	CTCAG	7 cut(s)	383, 412, 469, 2446, 2503, 2971, 3006
BspFNI	CGCG	1 cut(s)	2082
BspHI	TCATGA	2 cut(s)	805, 1909
BspLI	GGNNCC	9 cut(s)	867, 2452, 2453, 2559, 2811, 3851, 3852, 3894, 4095
BspMAI	CTGCAG	3 cut(s)	1294, 2794, 3277
BspPI	GGATC	9 cut(s)	780, 1453, 1460, 1504, 2213, 2552, 2565, 3887, 3900
BspQI	GCTCTTC	3 cut(s)	1127, 3189, 4033
BspTI	CTTAAG	1 cut(s)	2348
BspTNI	GGTCTC	1 cut(s)	1289
BsrBI	CCGCTC	1 cut(s)	2287
BsrDI	GCAATG	5 cut(s)	804, 1250, 2574, 3568, 3823
BsrFI	RCCGGY	3 cut(s)	1225, 2501, 3930
BsrGI	TGTACA	1 cut(s)	1816
BsrI	ACTGG	6 cut(s)	545, 1070, 1081, 1384, 2515, 4097
BssAI	RCCGGY	3 cut(s)	1225, 2501, 3930
BssSI	CACGAG	1 cut(s)	2301
BssT1I	CCWWGG	9 cut(s)	1104, 1457, 1915, 2775, 3611, 4027, 4164, 4253, 4298
Bst2BI	CACGAG	1 cut(s)	2301
Bst2UI	CCWGG	6 cut(s)	979, 1236, 1332, 2325, 2814, 3855
Bst6I	CTCTTC	7 cut(s)	596, 987, 1127, 3070, 3179, 3189, 4033
BstAFI	CTTAAG	1 cut(s)	2348
BstAPI	GCANNNNNTGC	3 cut(s)	1409, 2786, 3593
BstAUI	TGTACA	1 cut(s)	1816
BstBAI	YACGTR	1 cut(s)	1268
BstC8I	GCNNGC	8 cut(s)	227, 1061, 1146, 1709, 1870, 3127, 3601, 3875
BstDSI	CCRYGG	7 cut(s)	1104, 2775, 3611, 3667, 4027, 4253, 4298
BstFNI	CGCG	1 cut(s)	2082
BstH2I	RGCGCY	3 cut(s)	341, 2389, 4231
BstHHI	GCGC	5 cut(s)	340, 2036, 2388, 3107, 4230
BstMAI	GTCTC	6 cut(s)	548, 688, 1289, 1334, 1359, 1594
BstMCI	CGRYCG	2 cut(s)	734, 1226
BstNI	CCWGG	6 cut(s)	979, 1236, 1332, 2325, 2814, 3855
BstNSI	RCATGY	4 cut(s)	1261, 1711, 2523, 3373
BstSCI	CCNGG	7 cut(s)	977, 1234, 1330, 1983, 2323, 2812, 3853
BstSFI	CTRYAG	5 cut(s)	34, 1290, 1317, 2790, 3273
BstSLI	GKGCMC	2 cut(s)	227, 2454
BstUI	CGCG	1 cut(s)	2082
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	6 cut(s)	961, 1445, 1465, 1509, 2557, 3892
BstXI	CCANNNNNNTGG	3 cut(s)	464, 1379, 1922
BstYI	RGATCY	6 cut(s)	961, 1445, 1465, 1509, 2557, 3892
BsuI	GTATCC	4 cut(s)	1491, 3373, 4269, 4296
BtgI	CCRYGG	7 cut(s)	1104, 2775, 3611, 3667, 4027, 4253, 4298
BtgZI	GCGATG	1 cut(s)	2741
BtsI	GCAGTG	5 cut(s)	135, 488, 3265, 3653, 4274
BtuMI	TCGCGA	1 cut(s)	2082
Cac8I	GCNNGC	8 cut(s)	227, 1061, 1146, 1709, 1870, 3127, 3601, 3875
CaiI	CAGNNNCTG	2 cut(s)	175, 1065
CciI	TCATGA	2 cut(s)	805, 1909
CfoI	GCGC	5 cut(s)	340, 2036, 2388, 3107, 4230
Cfr10I	RCCGGY	3 cut(s)	1225, 2501, 3930
Cfr13I	GGNCC	8 cut(s)	172, 641, 1730, 2450, 2451, 3850, 3857, 4289
CseI	GACGC	1 cut(s)	2890
Csp6I	GTAC	8 cut(s)	742, 878, 1817, 2249, 2841, 3351, 4005, 4249
CspAI	ACCGGT	1 cut(s)	1225
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	8 cut(s)	742, 878, 1817, 2249, 2841, 3351, 4005, 4249
DraI	TTTAAA	1 cut(s)	2278
EaeI	YGGCCR	4 cut(s)	160, 1783, 2919, 3070
Eam1104I	CTCTTC	7 cut(s)	596, 987, 1127, 3070, 3179, 3189, 4033
EarI	CTCTTC	7 cut(s)	596, 987, 1127, 3070, 3179, 3189, 4033
Eco130I	CCWWGG	9 cut(s)	1104, 1457, 1915, 2775, 3611, 4027, 4164, 4253, 4298
Eco147I	AGGCCT	1 cut(s)	3042
Eco24I	GRGCYC	4 cut(s)	501, 1391, 1566, 2454
Eco31I	GGTCTC	1 cut(s)	1289
Eco32I	GATATC	3 cut(s)	1981, 2317, 3079
Eco47I	GGWCC	3 cut(s)	641, 3850, 3857
Eco47III	AGCGCT	2 cut(s)	2387, 4229
Eco57I	CTGAAG	2 cut(s)	533, 3213
Eco72I	CACGTG	1 cut(s)	1268
Eco88I	CYCGRG	1 cut(s)	1186
EcoO109I	RGGNCCY	6 cut(s)	172, 1730, 2451, 3850, 3857, 4289
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	6 cut(s)	977, 1234, 1330, 2323, 2812, 3853
EcoRV	GATATC	3 cut(s)	1981, 2317, 3079
EcoT14I	CCWWGG	9 cut(s)	1104, 1457, 1915, 2775, 3611, 4027, 4164, 4253, 4298
EcoT38I	GRGCYC	4 cut(s)	501, 1391, 1566, 2454
ErhI	CCWWGG	9 cut(s)	1104, 1457, 1915, 2775, 3611, 4027, 4164, 4253, 4298
FaqI	GGGAC	4 cut(s)	377, 2166, 3380, 3836
FauI	CCCGC	2 cut(s)	237, 1614
FbaI	TGATCA	3 cut(s)	9, 1669, 2730
FblI	GTMKAC	2 cut(s)	582, 2406
FriOI	GRGCYC	4 cut(s)	501, 1391, 1566, 2454
FspBI	CTAG	9 cut(s)	516, 1524, 1584, 1712, 2574, 3384, 3431, 3951, 4293
GlaI	GCGC	5 cut(s)	339, 2035, 2387, 3106, 4229
GsaI	CCCAGC	2 cut(s)	838, 3850
GsuI	CTGGAG	3 cut(s)	2532, 4080, 4321
HaeII	RGCGCY	3 cut(s)	341, 2389, 4231
HapII	CCGG	6 cut(s)	566, 1226, 1984, 2502, 3163, 3931
HgaI	GACGC	1 cut(s)	2890
HhaI	GCGC	5 cut(s)	340, 2036, 2388, 3107, 4230
Hin6I	GCGC	5 cut(s)	338, 2034, 2386, 3105, 4228
HinP1I	GCGC	5 cut(s)	338, 2034, 2386, 3105, 4228
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	3 cut(s)	524, 2272, 2672
HinfI	GANTC	9 cut(s)	718, 1006, 1359, 1570, 1602, 2328, 3713, 3923, 3968
HpaII	CCGG	6 cut(s)	566, 1226, 1984, 2502, 3163, 3931
Hpy166II	GTNNAC	5 cut(s)	583, 657, 829, 2407, 4187
Hpy8I	GTNNAC	5 cut(s)	583, 657, 829, 2407, 4187
HpyCH4IV	ACGT	4 cut(s)	416, 1267, 1938, 2155
HpySE526I	ACGT	4 cut(s)	416, 1267, 1938, 2155
HspAI	GCGC	5 cut(s)	338, 2034, 2386, 3105, 4228
KflI	GGGWCCC	1 cut(s)	3850
Ksp22I	TGATCA	3 cut(s)	9, 1669, 2730
LguI	GCTCTTC	3 cut(s)	1127, 3189, 4033
MaeI	CTAG	9 cut(s)	516, 1524, 1584, 1712, 2574, 3384, 3431, 3951, 4293
MaeII	ACGT	4 cut(s)	416, 1267, 1938, 2155
MaeIII	GTNAC	9 cut(s)	518, 715, 1268, 1889, 2416, 2620, 2866, 3292, 3331
MbiI	CCGCTC	1 cut(s)	2287
MfeI	CAATTG	2 cut(s)	1217, 1989
MflI	RGATCY	6 cut(s)	961, 1445, 1465, 1509, 2557, 3892
MhlI	GDGCHC	9 cut(s)	227, 289, 501, 1139, 1391, 1566, 2454, 4080, 4337
MlsI	TGGCCA	3 cut(s)	162, 1785, 3072
MluNI	TGGCCA	3 cut(s)	162, 1785, 3072
MlyI	GAGTC	4 cut(s)	712, 1596, 3932, 3962
MmeI	TCCRAC	8 cut(s)	887, 1034, 1068, 1405, 2458, 2535, 2566, 3664
Mox20I	TGGCCA	3 cut(s)	162, 1785, 3072
MroXI	GAANNNNTTC	2 cut(s)	268, 3402
MscI	TGGCCA	3 cut(s)	162, 1785, 3072
MslI	CAYNNNNRTG	5 cut(s)	189, 277, 1877, 2336, 3882
Msp20I	TGGCCA	3 cut(s)	162, 1785, 3072
MspA1I	CMGCKG	2 cut(s)	305, 3394
MspCI	CTTAAG	1 cut(s)	2348
MspI	CCGG	6 cut(s)	566, 1226, 1984, 2502, 3163, 3931
MspR9I	CCNGG	7 cut(s)	979, 1236, 1332, 1985, 2325, 2814, 3855
MunI	CAATTG	2 cut(s)	1217, 1989
Mva1269I	GAATGC	2 cut(s)	1905, 4324
MvaI	CCWGG	6 cut(s)	979, 1236, 1332, 2325, 2814, 3855
MvnI	CGCG	1 cut(s)	2082
NciI	CCSGG	1 cut(s)	1985
NcoI	CCATGG	6 cut(s)	1104, 2775, 3611, 4027, 4253, 4298
NlaIV	GGNNCC	9 cut(s)	867, 2452, 2453, 2559, 2811, 3851, 3852, 3894, 4095
NmeAIII	GCCGAG	1 cut(s)	3930
NmuCI	GTSAC	4 cut(s)	518, 715, 1268, 2620
NruI	TCGCGA	1 cut(s)	2082
NspI	RCATGY	4 cut(s)	1261, 1711, 2523, 3373
OliI	CACNNNNGTG	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	1711
PaeR7I	CTCGAG	1 cut(s)	1186
PagI	TCATGA	2 cut(s)	805, 1909
PceI	AGGCCT	1 cut(s)	3042
PciI	ACATGT	2 cut(s)	1257, 3369
PciSI	GCTCTTC	3 cut(s)	1127, 3189, 4033
PcsI	WCGNNNNNNNCGW	1 cut(s)	1861
PctI	GAATGC	2 cut(s)	1905, 4324
PdmI	GAANNNNTTC	2 cut(s)	268, 3402
PfeI	GAWTC	5 cut(s)	1006, 1359, 1570, 2328, 3713
PflMI	CCANNNNNTGG	2 cut(s)	4269, 4329
PfoI	TCCNGGA	1 cut(s)	2812
PinAI	ACCGGT	1 cut(s)	1225
PleI	GAGTC	4 cut(s)	712, 1596, 3931, 3962
PmaCI	CACGTG	1 cut(s)	1268
PmlI	CACGTG	1 cut(s)	1268
PpsI	GAGTC	4 cut(s)	712, 1596, 3931, 3962
Ppu21I	YACGTR	1 cut(s)	1268
PpuMI	RGGWCCY	2 cut(s)	3850, 3857
PscI	ACATGT	2 cut(s)	1257, 3369
PshBI	ATTAAT	3 cut(s)	783, 927, 3141
Psp5II	RGGWCCY	2 cut(s)	3850, 3857
Psp6I	CCWGG	6 cut(s)	977, 1234, 1330, 2323, 2812, 3853
PspCI	CACGTG	1 cut(s)	1268
PspFI	CCCAGC	2 cut(s)	834, 3846
PspGI	CCWGG	6 cut(s)	977, 1234, 1330, 2323, 2812, 3853
PspN4I	GGNNCC	9 cut(s)	867, 2452, 2453, 2559, 2811, 3851, 3852, 3894, 4095
PspOMI	GGGCCC	1 cut(s)	2450
PspPI	GGNCC	8 cut(s)	172, 641, 1730, 2450, 2451, 3850, 3857, 4289
PspPPI	RGGWCCY	2 cut(s)	3850, 3857
PspXI	VCTCGAGB	1 cut(s)	1186
PstI	CTGCAG	3 cut(s)	1294, 2794, 3277
PstNI	CAGNNNCTG	2 cut(s)	175, 1065
PsuI	RGATCY	6 cut(s)	961, 1445, 1465, 1509, 2557, 3892
PvuII	CAGCTG	2 cut(s)	305, 3394
RruI	TCGCGA	1 cut(s)	2082
RsaI	GTAC	8 cut(s)	743, 879, 1818, 2250, 2842, 3352, 4006, 4250
RsaNI	GTAC	8 cut(s)	742, 878, 1817, 2249, 2841, 3351, 4005, 4249
RseI	CAYNNNNRTG	5 cut(s)	189, 277, 1877, 2336, 3882
SalI	GTCGAC	1 cut(s)	581
SapI	GCTCTTC	3 cut(s)	1127, 3189, 4033
Sau96I	GGNCC	8 cut(s)	172, 641, 1730, 2450, 2451, 3850, 3857, 4289
ScaI	AGTACT	3 cut(s)	2250, 3352, 4006
SchI	GAGTC	4 cut(s)	712, 1596, 3932, 3962
ScrFI	CCNGG	7 cut(s)	979, 1236, 1332, 1985, 2325, 2814, 3855
SduI	GDGCHC	9 cut(s)	227, 289, 501, 1139, 1391, 1566, 2454, 4080, 4337
SfcI	CTRYAG	5 cut(s)	34, 1290, 1317, 2790, 3273
Sfr274I	CTCGAG	1 cut(s)	1186
SinI	GGWCC	3 cut(s)	641, 3850, 3857
SlaI	CTCGAG	1 cut(s)	1186
SmiMI	CAYNNNNRTG	5 cut(s)	189, 277, 1877, 2336, 3882
SmlI	CTYRAG	7 cut(s)	288, 1186, 2240, 2348, 2996, 3110, 3861
SmoI	CTYRAG	7 cut(s)	288, 1186, 2240, 2348, 2996, 3110, 3861
SpeI	ACTAGT	2 cut(s)	3383, 3950
SphI	GCATGC	1 cut(s)	1711
SseBI	AGGCCT	1 cut(s)	3042
SsiI	CCGC	9 cut(s)	244, 1003, 1621, 1796, 2287, 2922, 2932, 3584, 4175
SspMI	CTAG	9 cut(s)	516, 1524, 1584, 1712, 2574, 3384, 3431, 3951, 4293
StuI	AGGCCT	1 cut(s)	3042
StyD4I	CCNGG	7 cut(s)	977, 1234, 1330, 1983, 2323, 2812, 3853
StyI	CCWWGG	9 cut(s)	1104, 1457, 1915, 2775, 3611, 4027, 4164, 4253, 4298
TaiI	ACGT	4 cut(s)	419, 1270, 1941, 2158
TatI	WGTACW	5 cut(s)	1816, 2248, 2840, 3350, 4004
TauI	GCSGC	4 cut(s)	2924, 2935, 3587, 4178
TfiI	GAWTC	5 cut(s)	1006, 1359, 1570, 2328, 3713
TseFI	GTSAC	4 cut(s)	518, 715, 1268, 2620
Tsp45I	GTSAC	4 cut(s)	518, 715, 1268, 2620
TspDTI	ATGAA	9 cut(s)	40, 139, 261, 794, 1898, 3069, 3456, 3516, 3901
TspGWI	ACGGA	6 cut(s)	833, 1458, 2997, 3656, 4145, 4321
Van91I	CCANNNNNTGG	2 cut(s)	4269, 4329
Vha464I	CTTAAG	1 cut(s)	2348
VpaK11BI	GGWCC	3 cut(s)	641, 3850, 3857
VspI	ATTAAT	3 cut(s)	783, 927, 3141
XapI	RAATTY	8 cut(s)	146, 571, 1083, 1489, 1553, 2279, 2460, 3401
XbaI	TCTAGA	1 cut(s)	3430
XceI	RCATGY	4 cut(s)	1261, 1711, 2523, 3373
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1922, 3532
XhoI	CTCGAG	1 cut(s)	1186
XmiI	GTMKAC	2 cut(s)	582, 2406
XmnI	GAANNNNTTC	2 cut(s)	268, 3402
XspI	CTAG	9 cut(s)	516, 1524, 1584, 1712, 2574, 3384, 3431, 3951, 4293
ZrmI	AGTACT	3 cut(s)	2250, 3352, 4006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.