Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005762

Physical Location & Seq

Genomic Coordinates Forward (+)

19739661 .. 19744946

Gene Structure 5286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4191 bp

ATGGCTGGTATTCGGGAGATCACTGCTGGTGAATTCATAAAAGGTGGCCATAAACTGGGCCTGTTTTCTCAGAGAGGTCCTTTGAAAGGAAGAAGCCCTATGCTTTGGGGCACGCTGCACAGTTCAGTGCGGGGTTCTGCTAATAGGAGAAATGCTTCATTGAGATGTCGTGCTCAAGAAAAGCCCACAGCTGTTGTTTCGGCTGTGAGCAAAGCCTTTTCGTCAGTTATCCATTTTTATCGTGTCCCTCTCATTCAGGAGAGTGCAACATCTGAGCTTCTCAAAACCGTGCAGTCAAAGATTTCGAGCCAGATAGTTGGTTTGAAAACTGAGCAGTGTTTCAACATTGGGCTCAGTTCGCAGCTCTCTAGTGAAAAGCTTTTGGTGCTTAAGTGGCTTCTTCAGGAGACTTATGAGCCGGAGAATTTGGGGGTCAACAGCTTTCTTGAAAAGAAAAGGCATGAAGGACTGAACACAGTTATTGTTGAGGTTGGTCCTCGGTTGTCGTTTACAACAGCATGGTCTTCCAATGCTGTTTCGATATGTAGAGCTTGTGGCTTGACAGAGGTGACTCGTTTGGAACGGTCAAGGAGGTACTTGCTGTTTAGTAAGGGGAACTTGCAGGACCAACAGATTAATGAGTTTGCTGCAATGGTTCATGATCGGATGACGGAGTGTGTTTACACCCAGCAGCTCACTTCTTTTGAAACAAGTGTGGTTCCCGACAAAGTACGTCATATTCCTGTTATGGAGAGAGGTCGGAAGGCATTAGAGGAGATTAATCAGGAAATGGGTTTAGCATTTGATGAGCAAGATCTCCAATACTACACCAGGCTATTCAAGGAAGAAATCAAACGGAATCCAACAACAGTTGAACTTTTTGATATTGCACAGTCCAACAGTGAGCATAGCAGGCACTGGTTTTTTACTGGTAAAATTTTTATAGATGGACAGCCTATGGACAAAACTCTAATGCAAATTGTGAAGAGCACTTTGCAAGCAAACCCAAACAATTCTGTCATTGGGTTTAAGGACAACTCAAGTGCAATTAGGGGATTTCTTGTGAAGCAATTGCGACCAGTTCAGCCAGGTTCAACATCTCCGTTGCATATGTCCACACGTGACCTGGATATATTATTTACTGCAGAGACCCATAATTTTCCATGTGCTGTAGCACCTTACCCTGGTGCAGAGACAGGTGCAGGAGGTAGAATCAGGGACACTCATGCAACTGGAAGGGGTTCTTTTGTGGTAGCATCTACTGCTGGTTATTGTGTCGGGAATCTCAATATGGAAGGGTCTTATGCTCCTTGGGAAGATTCATCTTTCTTGTATCCATCAAATTTGGCCTCACCTTTGCAGATCCTCATAGATGCTAGCAATGGTGCATCAGACTACGGCAACAAATTTGGTGAGCCATTGATTCAGGGATACACTAGAACCTTTGGAATGAGGCTCCCAAGTGGTGAGAGGCGGGAATGGTTGAAGCCAATCATGTTCAGTGCAGGAATTGGACAAATTGATCACGCCCATATAACAAAAGGAGAGCCTGATATTGGCATGCTGGTTGTAAAGATTGGAGGCCCTGCCTATCGTATTGGTATGGGCGGTGGGGCTGCATCGAGCATGGTTAGTGGTCAAAATGACGTGGAGCTGGATTTCAATGCTGTACAGCGTGGGGATGCAGAGATGGCCCAAAAATTGTATCGTGTTGTTCGTGCCTGCATTGAGATGGGGGACAGTAATCCAATCATTAGCATTCATGACCAAGGAGCTGGTGGAAACTGCAACGTGGTTAAGGAAATTATTTACCCGAAGGGTGGTGAGATTGATATCCGGGCAATTGTGGTTGGTGATTACACAATGTCTGTCTTGGAGATATGGGGTGCAGAATATCAGGAACAAGATGCCATCTTGGTTAAGCCTGAAAGTCACGAACTTTTGCAATCAATATGTGAAAGAGAAAGGTGTTCTATGGCTGTTATTGGAACAATCAATGGTGAGGGACGTATTGTTTTAATTGATAGCTTAGCTATTGAAAAATCTAAATCAAGTGGCCTCCCTCTCCCGGATCCTGCTGTCGATTTGGAGCTTGAGAAAGTACTTGGTGATATGCCACAGAAAAGCTTTGAGTTCGAGCGGATGGCAGATGCACGAGAGCCACTTGATATTGCCCCTGGAATCACTGTAATGGATGCTCTTAAGAGAGTTTTAAGACTTCCATCCATCTGTTCAAAGCGGTTCTTGACCTCGAAAGTAGACAGGTGTGTTACAGGTCTGGTAGCTCAGCAGCAAACTGTCGGCCCCCTACAAATTCCTCTCTCTGATGTTGGAGTAATTGCTCAGACTTTTACCGGCTTGACTGGAGGTGCATGTGCTATTGGGGAGCAGCCAATCAAAGGTTTGTTGGATCCAAAAGCAATGGCGAGATTGGCAGTTGGGGAAGCACTCACAAACCTTGTTTGGGCAAAGGTCACTTCTCTATCTGATGTTAAAGCAAGTGGGAATTGGATGTTTGCGGCCAAGCTTGATGGTGAAGGAGCAGCTATGTATGATGCTGCTAATGCTCTTTCAGACGCAATGATCAAACTTGGTATTGCTATTGATGGGGGAAAGGACAGTCTTTCCATGGCAGCCCATGCTGCAGGAGAGGTTGTTAAGGCTCCTGGAAATCTTGTAATCAGTGTTTATTGTACTTATTTGAAGCTTGGAGATGATGGTGTTCTGCTTCACATTGATTTGGCTGCAGGAAAGCGGCGATTAGGTGGCTCTGCTCTTGCTCAGGTTTTTGACCAGATTGGGAACGATTGTCCTGACCTTGAGGATGTTCCATATCTGAAGCGAGTGTTTGAGGGAGTTCAGGGCCTTCTTGACGATGAACTGATCTCTGCTGGCCATGATATCAGTGATGGTGGGCTTCTGGTCTCTGCCCTTGAGATGGCATTTGCTGGAAATTGTGGCATTAATTTGGACTTGACTTCGCACCATAAGAGCCTCTTCCAAACAATTTTTTCTGAAGAGCTTGGTCTGATTATTGAGGTGAGCAAGAAAAACTTAGATATGGTAATGGGAAAGCTAAGCAGTGGAGGTGTTTCTGCAGAGATGATTGGACAGGTAACTGCCACACCTTCAATAGAGTTAAAGGTGGATGGGGTAACTCATTTGAACGAAAGTACTTCTTTTGTAAGGGACATGTGGGAGGATACTAGTTTTCAGCTGGAAAAATTTCAGAGATTGGCTTCTTGTGTTGATCTAGAGAAAGAAGGGTTGAAAGATAGGCATGAGCCTTCATGGCAGTTGTCTTTTACTCCGTCCTTCACAGATGAAAAGTATATGACCACAACCTCCAAACCAAAGGTGGCTGTTATTCGAGAAGAAGGAAGCAATGGGGATAGAGAAATGGCTGCGGCATTTTATGCTGCTGGCTTTGAGCCATGGGATATTACAATGTCAGACCTTCTTAATGGAGCTGTATCACTGCAAGAGTTCCGTGGAATTGTGTTTGTTGGAGGCTTTAGCTATGCTGATGTCCTTGATTCTGCAAAAGGTTGGTCTGCTTCAATTAGATTTAATCAGCCCCTTCTGAATCAATTTCAGGAGTTTTACAAGAGGCACGACACTTTCAGTCTTGGCGTTTGCAATGGGTGTCAGCTTATGGCTCTTTTGGGGTGGGTCCCAGGTCCTCAAGTTGGGGGCGTGCATGGTGGTGGTGGGGATCCATCACAGCCGAGGTTCATTCACAACGAGTCAGGCCGGTTTGAGTGTCGATTTACTAGTGTAAAAATTAAGGACTCACCATCTATAATGTTAAAAGGAATGGAAGGAAGTACCTTGGGCGTGTGGGCTGCCCATGGTGAGGGAAGAGCCTATTTTCCTGATGATGGTGTTTTTGATCGTGTGCTCCACTCCAAGTTGGCTCCAGTAAGATATTGTGATGATGATGGGATTGAAACGGAACTTTATCCCTTCAACCTGAATGGCTCTCCCTTGGGAGTTGCAGCAATTTGTTCACCAGATGGGAGGCATCTTGCCATGATGCCTCATCCAGAGCGCTGCTTCTTAATGTGGCAGTATCCATGGTATCCCAAGCAGTGGGATGTTGAAAAGAAAGGCCCTAGTCCATGGCTACGGATGTTCCAGAATGCCAGAGAGTGGTGCACCAGAAATGAGGAGTTCACTCTTTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

1396

Amino Acids

152.89

Weight (kDa)

5.59

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGAR-AT_N	PF18076	113 - 231	2.5e-21	Formylglycinamide ribonucleotide amidotransferase N-terminal
FGAR-AT_linker	PF18072	257 - 306	4.8e-11	Formylglycinamide ribonucleotide amidotransferase linker domain
AIRS_C	PF02769	520 - 674	1.3e-26	AIR synthase related protein, C-terminal domain
FGAR-AT_PurM_N-like	PF22689	745 - 898	2.8e-52	FGAR-AT PurM_N-like domain
AIRS_C	PF02769	919 - 1049	1.6e-17	AIR synthase related protein, C-terminal domain
GATase_5	PF13507	1117 - 1386	2.5e-105	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74260
fragaria_vesca	FvH4_5g19530 FvH4_5g19530 FvH4_5g19530
malus_domestica	MD03G1203100.v1.1 MD04G1022300.v1.1
prunus_persica	Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1
pyrus_communis	pycom04g01890 pycom04g01930
rosa_chinensis	RchiOBHm_Chr7g0204141
rosa_laevigata	RLG00000003485
rosa_multiflora	Rmu_sc0001311.1_g000031
rosa_roxburghii	Rroxscaffold_3G00253310
rosa_rugosa	Rorug07G0081100 Rorug07G0081200 Rorug07G0081200
rosa_samantha	Rh7AG211000 Rh7BG209600 Rh7CG223500 Rh7DG217800
rosa_wichuraiana	Rw7G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	55, 4092, 4152
AccBSI	CCGCTC	1 cut(s)	2140
AccI	GTMKAC	1 cut(s)	2259
AciI	CCGC	8 cut(s)	130, 1474, 1608, 2140, 2239, 2519, 2755, 3407
AclWI	GGATC	7 cut(s)	1357, 2066, 2079, 2405, 2418, 3710, 3723
AcoI	YGGCCR	3 cut(s)	46, 2520, 2893
AcsI	RAATTY	7 cut(s)	32, 424, 936, 1342, 1406, 2313, 3224
AcuI	CTGAAG	3 cut(s)	386, 2858, 3036
AcvI	CACGTG	1 cut(s)	1121
AfaI	GTAC	7 cut(s)	596, 732, 1671, 2103, 2695, 3175, 3829
AfeI	AGCGCT	1 cut(s)	4052
AflII	CTTAAG	2 cut(s)	389, 2201
AflIII	ACRYGT	2 cut(s)	1118, 3192
AhlI	ACTAGT	2 cut(s)	3206, 3773
AjiI	CACGTC	1 cut(s)	1648
AjnI	CCWGG	7 cut(s)	830, 1087, 1125, 1183, 2176, 2665, 3676
Alw21I	GWGCWC	4 cut(s)	175, 992, 3903, 4160
Alw26I	GTCTC	4 cut(s)	401, 1142, 1187, 2929
Alw44I	GTGCAC	1 cut(s)	4156
AlwI	GGATC	7 cut(s)	1357, 2066, 2079, 2405, 2418, 3710, 3723
AlwNI	CAGNNNCTG	1 cut(s)	918
Aor51HI	AGCGCT	1 cut(s)	4052
ApaLI	GTGCAC	1 cut(s)	4156
ApoI	RAATTY	7 cut(s)	32, 424, 936, 1342, 1406, 2313, 3224
ArsI	GACNNNNNNTTYG	2 cut(s)	3536, 3568
AseI	ATTAAT	3 cut(s)	636, 780, 2964
Asp700I	GAANNNNTTC	3 cut(s)	154, 1240, 3225
AspLEI	GCGC	1 cut(s)	4053
AsuC2I	CCSGG	2 cut(s)	1838, 2069
AsuNHI	GCTAGC	1 cut(s)	1376
AvaII	GGWCC	5 cut(s)	77, 494, 625, 3673, 3680
BaeGI	GKGCMC	2 cut(s)	113, 4160
BalI	TGGCCA	2 cut(s)	48, 2895
BamHI	GGATCC	3 cut(s)	2071, 2410, 3715
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	2154
BbrPI	CACGTG	1 cut(s)	1121
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	4 cut(s)	175, 992, 3903, 4160
BceAI	ACGGC	1 cut(s)	1414
BciT130I	CCWGG	7 cut(s)	832, 1089, 1127, 1185, 2178, 2667, 3678
BciVI	GTATCC	5 cut(s)	1344, 1424, 3196, 4083, 4092
BclI	TGATCA	2 cut(s)	1522, 2583
BcnI	CCSGG	2 cut(s)	1838, 2069
BcoDI	GTCTC	4 cut(s)	401, 1142, 1187, 2929
BcuI	ACTAGT	2 cut(s)	3206, 3773
BfaI	CTAG	8 cut(s)	369, 1377, 1437, 3207, 3254, 3774, 4116, 4189
BfmI	CTRYAG	5 cut(s)	1143, 1170, 2643, 2745, 3096
BfoI	RGCGCY	1 cut(s)	4054
BfrI	CTTAAG	2 cut(s)	389, 2201
BfuI	GTATCC	5 cut(s)	1344, 1424, 3196, 4083, 4092
BglI	GCCNNNNNGGC	1 cut(s)	3292
BglII	AGATCT	1 cut(s)	814
BlpI	GCTNAGC	3 cut(s)	2029, 2286, 3077
BmcAI	AGTACT	2 cut(s)	2103, 3175
Bme1390I	CCNGG	9 cut(s)	832, 1089, 1127, 1185, 1838, 2069, 2178, 2667, 3678
Bme18I	GGWCC	5 cut(s)	77, 494, 625, 3673, 3680
BmgBI	CACGTC	1 cut(s)	1648
BmrFI	CCNGG	9 cut(s)	832, 1089, 1127, 1185, 1838, 2069, 2178, 2667, 3678
BmrI	ACTGGG	1 cut(s)	65
BmtI	GCTAGC	1 cut(s)	1380
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	2385, 3903
Bpu10I	CCTNAGC	1 cut(s)	2781
Bpu1102I	GCTNAGC	3 cut(s)	2029, 2286, 3077
BpuEI	CTTGAG	6 cut(s)	159, 1024, 2114, 2840, 2954, 3669
BpuMI	CCSGG	2 cut(s)	1838, 2069
BsaAI	YACGTR	1 cut(s)	1121
BsaBI	GATNNNNATC	1 cut(s)	1832
BsaI	GGTCTC	2 cut(s)	1142, 2929
BsaXI	ACNNNNNCTCC	2 cut(s)	2640, 2670
Bse118I	RCCGGY	2 cut(s)	2354, 3753
Bse1I	ACTGG	7 cut(s)	60, 923, 934, 1079, 1237, 2368, 3920
Bse3DI	GCAATG	6 cut(s)	657, 1387, 2427, 2586, 3391, 3646
Bse8I	GATNNNNATC	1 cut(s)	1832
BseBI	CCWGG	7 cut(s)	832, 1089, 1127, 1185, 2178, 2667, 3678
BseJI	GATNNNNATC	1 cut(s)	1832
BseMI	GCAATG	6 cut(s)	657, 1387, 2427, 2586, 3391, 3646
BseMII	CTCAG	7 cut(s)	83, 264, 321, 367, 2300, 2357, 2795
BseNI	ACTGG	7 cut(s)	60, 923, 934, 1079, 1237, 2368, 3920
BseRI	GAGGAG	2 cut(s)	788, 4184
BseSI	GKGCMC	2 cut(s)	113, 4160
BseYI	CCCAGC	1 cut(s)	687
BsgI	GTGCAG	6 cut(s)	101, 311, 1209, 1221, 1524, 1908
BsiHKAI	GWGCWC	4 cut(s)	175, 992, 3903, 4160
BsiSI	CCGG	5 cut(s)	419, 1837, 2069, 2355, 3754
BslFI	GGGAC	6 cut(s)	230, 1232, 1751, 2019, 3203, 3659
BsmAI	GTCTC	4 cut(s)	401, 1142, 1187, 2929
BsmFI	GGGAC	6 cut(s)	230, 1232, 1751, 2019, 3203, 3659
BsmI	GAATGC	2 cut(s)	1758, 4147
Bso31I	GGTCTC	2 cut(s)	1142, 2929
Bsp1286I	GDGCHC	6 cut(s)	113, 175, 354, 992, 3903, 4160
Bsp1407I	TGTACA	1 cut(s)	1669
Bsp1720I	GCTNAGC	3 cut(s)	2029, 2286, 3077
Bsp19I	CCATGG	5 cut(s)	2628, 3434, 3850, 4076, 4121
BspACI	CCGC	8 cut(s)	130, 1474, 1608, 2140, 2239, 2519, 2755, 3407
BspCNI	CTCAG	7 cut(s)	82, 265, 322, 366, 2299, 2356, 2794
BspHI	TCATGA	2 cut(s)	658, 1762
BspMAI	CTGCAG	4 cut(s)	1147, 2647, 2749, 3100
BspOI	GCTAGC	1 cut(s)	1380
BspPI	GGATC	7 cut(s)	1357, 2066, 2079, 2405, 2418, 3710, 3723
BspQI	GCTCTTC	3 cut(s)	980, 3012, 3856
BspTI	CTTAAG	2 cut(s)	389, 2201
BspTNI	GGTCTC	2 cut(s)	1142, 2929
BsrBI	CCGCTC	1 cut(s)	2140
BsrDI	GCAATG	6 cut(s)	657, 1387, 2427, 2586, 3391, 3646
BsrFI	RCCGGY	2 cut(s)	2354, 3753
BsrGI	TGTACA	1 cut(s)	1669
BsrI	ACTGG	7 cut(s)	60, 923, 934, 1079, 1237, 2368, 3920
BssAI	RCCGGY	2 cut(s)	2354, 3753
BssSI	CACGAG	1 cut(s)	2154
BssT1I	CCWWGG	9 cut(s)	1310, 1768, 2628, 3434, 3831, 3850, 3987, 4076, 4121
Bst2BI	CACGAG	1 cut(s)	2154
Bst2UI	CCWGG	7 cut(s)	832, 1089, 1127, 1185, 2178, 2667, 3678
Bst6I	CTCTTC	4 cut(s)	980, 3002, 3012, 3856
BstAFI	CTTAAG	2 cut(s)	389, 2201
BstAPI	GCANNNNNTGC	3 cut(s)	1262, 2639, 3416
BstAUI	TGTACA	1 cut(s)	1669
BstBAI	YACGTR	1 cut(s)	1121
BstC8I	GCNNGC	9 cut(s)	113, 914, 999, 1378, 1562, 1723, 2893, 3424, 3698
BstDSI	CCRYGG	6 cut(s)	2628, 3434, 3490, 3850, 4076, 4121
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	4054
BstHHI	GCGC	1 cut(s)	4053
BstMAI	GTCTC	4 cut(s)	401, 1142, 1187, 2929
BstNI	CCWGG	7 cut(s)	832, 1089, 1127, 1185, 2178, 2667, 3678
BstNSI	RCATGY	3 cut(s)	1564, 2376, 3196
BstSCI	CCNGG	9 cut(s)	830, 1087, 1125, 1183, 1836, 2067, 2176, 2665, 3676
BstSFI	CTRYAG	5 cut(s)	1143, 1170, 2643, 2745, 3096
BstSLI	GKGCMC	2 cut(s)	113, 4160
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	5 cut(s)	814, 1362, 2071, 2410, 3715
BstXI	CCANNNNNNTGG	2 cut(s)	317, 1775
BstYI	RGATCY	5 cut(s)	814, 1362, 2071, 2410, 3715
BsuI	GTATCC	5 cut(s)	1344, 1424, 3196, 4083, 4092
BtgI	CCRYGG	6 cut(s)	2628, 3434, 3490, 3850, 4076, 4121
BtrI	CACGTC	1 cut(s)	1648
BtsI	GCAGTG	5 cut(s)	21, 341, 3088, 3476, 4097
Cac8I	GCNNGC	9 cut(s)	113, 914, 999, 1378, 1562, 1723, 2893, 3424, 3698
CaiI	CAGNNNCTG	1 cut(s)	918
CciI	TCATGA	2 cut(s)	658, 1762
CfoI	GCGC	1 cut(s)	4053
Cfr10I	RCCGGY	2 cut(s)	2354, 3753
CseI	GACGC	1 cut(s)	2585
Csp6I	GTAC	7 cut(s)	595, 731, 1670, 2102, 2694, 3174, 3828
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviQI	GTAC	7 cut(s)	595, 731, 1670, 2102, 2694, 3174, 3828
EaeI	YGGCCR	3 cut(s)	46, 2520, 2893
Eam1104I	CTCTTC	4 cut(s)	980, 3002, 3012, 3856
EarI	CTCTTC	4 cut(s)	980, 3002, 3012, 3856
Eco130I	CCWWGG	9 cut(s)	1310, 1768, 2628, 3434, 3831, 3850, 3987, 4076, 4121
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	2 cut(s)	1142, 2929
Eco32I	GATATC	2 cut(s)	1834, 2902
Eco47I	GGWCC	5 cut(s)	77, 494, 625, 3673, 3680
Eco47III	AGCGCT	1 cut(s)	4052
Eco57I	CTGAAG	3 cut(s)	386, 2858, 3036
Eco72I	CACGTG	1 cut(s)	1121
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	6 cut(s)	77, 1583, 2863, 3673, 3680, 4112
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	7 cut(s)	830, 1087, 1125, 1183, 2176, 2665, 3676
EcoRV	GATATC	2 cut(s)	1834, 2902
EcoT14I	CCWWGG	9 cut(s)	1310, 1768, 2628, 3434, 3831, 3850, 3987, 4076, 4121
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	9 cut(s)	1310, 1768, 2628, 3434, 3831, 3850, 3987, 4076, 4121
FaqI	GGGAC	6 cut(s)	230, 1232, 1751, 2019, 3203, 3659
FauI	CCCGC	2 cut(s)	123, 1467
FauNDI	CATATG	1 cut(s)	1110
FbaI	TGATCA	2 cut(s)	1522, 2583
FblI	GTMKAC	1 cut(s)	2259
FriOI	GRGCYC	1 cut(s)	354
FspBI	CTAG	8 cut(s)	369, 1377, 1437, 3207, 3254, 3774, 4116, 4189
GlaI	GCGC	1 cut(s)	4052
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	2 cut(s)	2385, 3903
HaeII	RGCGCY	1 cut(s)	4054
HapII	CCGG	5 cut(s)	419, 1837, 2069, 2355, 3754
HgaI	GACGC	1 cut(s)	2585
HhaI	GCGC	1 cut(s)	4053
Hin6I	GCGC	1 cut(s)	4051
HinP1I	GCGC	1 cut(s)	4051
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	4 cut(s)	377, 2125, 2525, 2705
HpaII	CCGG	5 cut(s)	419, 1837, 2069, 2355, 3754
Hpy166II	GTNNAC	8 cut(s)	436, 510, 682, 1116, 2260, 4010, 4158, 4176
Hpy8I	GTNNAC	8 cut(s)	436, 510, 682, 1116, 2260, 4010, 4158, 4176
HpyCH4IV	ACGT	5 cut(s)	733, 1120, 1647, 1791, 2008
HpySE526I	ACGT	5 cut(s)	733, 1120, 1647, 1791, 2008
HspAI	GCGC	1 cut(s)	4051
KflI	GGGWCCC	1 cut(s)	3673
Ksp22I	TGATCA	2 cut(s)	1522, 2583
LguI	GCTCTTC	3 cut(s)	980, 3012, 3856
MaeI	CTAG	8 cut(s)	369, 1377, 1437, 3207, 3254, 3774, 4116, 4189
MaeII	ACGT	5 cut(s)	733, 1120, 1647, 1791, 2008
MaeIII	GTNAC	7 cut(s)	568, 1121, 1931, 2269, 2473, 3115, 3154
MbiI	CCGCTC	1 cut(s)	2140
MfeI	CAATTG	2 cut(s)	1070, 1842
MflI	RGATCY	5 cut(s)	814, 1362, 2071, 2410, 3715
MhlI	GDGCHC	6 cut(s)	113, 175, 354, 992, 3903, 4160
MlsI	TGGCCA	2 cut(s)	48, 2895
MluNI	TGGCCA	2 cut(s)	48, 2895
MlyI	GAGTC	3 cut(s)	565, 3755, 3785
MmeI	TCCRAC	6 cut(s)	740, 887, 921, 2311, 2388, 3487
Mox20I	TGGCCA	2 cut(s)	48, 2895
MroXI	GAANNNNTTC	3 cut(s)	154, 1240, 3225
MscI	TGGCCA	2 cut(s)	48, 2895
MslI	CAYNNNNRTG	4 cut(s)	163, 1730, 2189, 3705
Msp20I	TGGCCA	2 cut(s)	48, 2895
MspA1I	CMGCKG	2 cut(s)	191, 3217
MspCI	CTTAAG	2 cut(s)	389, 2201
MspI	CCGG	5 cut(s)	419, 1837, 2069, 2355, 3754
MspR9I	CCNGG	9 cut(s)	832, 1089, 1127, 1185, 1838, 2069, 2178, 2667, 3678
MunI	CAATTG	2 cut(s)	1070, 1842
Mva1269I	GAATGC	2 cut(s)	1758, 4147
MvaI	CCWGG	7 cut(s)	832, 1089, 1127, 1185, 2178, 2667, 3678
NciI	CCSGG	2 cut(s)	1838, 2069
NcoI	CCATGG	5 cut(s)	2628, 3434, 3850, 4076, 4121
NdeI	CATATG	1 cut(s)	1110
NheI	GCTAGC	1 cut(s)	1376
NmeAIII	GCCGAG	1 cut(s)	3753
NmuCI	GTSAC	4 cut(s)	568, 1121, 1931, 2473
NspI	RCATGY	3 cut(s)	1564, 2376, 3196
PaeI	GCATGC	1 cut(s)	1564
PagI	TCATGA	2 cut(s)	658, 1762
PciI	ACATGT	1 cut(s)	3192
PciSI	GCTCTTC	3 cut(s)	980, 3012, 3856
PcsI	WCGNNNNNNNCGW	1 cut(s)	1714
PctI	GAATGC	2 cut(s)	1758, 4147
PdmI	GAANNNNTTC	3 cut(s)	154, 1240, 3225
PfeI	GAWTC	8 cut(s)	859, 1212, 1282, 1319, 1423, 2181, 3536, 3586
PflMI	CCANNNNNTGG	3 cut(s)	55, 4092, 4152
PfoI	TCCNGGA	2 cut(s)	2067, 2665
PleI	GAGTC	3 cut(s)	565, 3754, 3785
PmaCI	CACGTG	1 cut(s)	1121
PmlI	CACGTG	1 cut(s)	1121
PpsI	GAGTC	3 cut(s)	565, 3754, 3785
Ppu21I	YACGTR	1 cut(s)	1121
PpuMI	RGGWCCY	3 cut(s)	77, 3673, 3680
PscI	ACATGT	1 cut(s)	3192
PshBI	ATTAAT	3 cut(s)	636, 780, 2964
Psp5II	RGGWCCY	3 cut(s)	77, 3673, 3680
Psp6I	CCWGG	7 cut(s)	830, 1087, 1125, 1183, 2176, 2665, 3676
PspCI	CACGTG	1 cut(s)	1121
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	7 cut(s)	830, 1087, 1125, 1183, 2176, 2665, 3676
PspPPI	RGGWCCY	3 cut(s)	77, 3673, 3680
PstI	CTGCAG	4 cut(s)	1147, 2647, 2749, 3100
PstNI	CAGNNNCTG	1 cut(s)	918
PsuI	RGATCY	5 cut(s)	814, 1362, 2071, 2410, 3715
PvuII	CAGCTG	2 cut(s)	191, 3217
RsaI	GTAC	7 cut(s)	596, 732, 1671, 2103, 2695, 3175, 3829
RsaNI	GTAC	7 cut(s)	595, 731, 1670, 2102, 2694, 3174, 3828
RseI	CAYNNNNRTG	4 cut(s)	163, 1730, 2189, 3705
SapI	GCTCTTC	3 cut(s)	980, 3012, 3856
ScaI	AGTACT	2 cut(s)	2103, 3175
SchI	GAGTC	3 cut(s)	565, 3755, 3785
ScrFI	CCNGG	9 cut(s)	832, 1089, 1127, 1185, 1838, 2069, 2178, 2667, 3678
SduI	GDGCHC	6 cut(s)	113, 175, 354, 992, 3903, 4160
SfcI	CTRYAG	5 cut(s)	1143, 1170, 2643, 2745, 3096
SinI	GGWCC	5 cut(s)	77, 494, 625, 3673, 3680
SmiMI	CAYNNNNRTG	4 cut(s)	163, 1730, 2189, 3705
SmlI	CTYRAG	8 cut(s)	174, 389, 1039, 2093, 2201, 2819, 2933, 3684
SmoI	CTYRAG	8 cut(s)	174, 389, 1039, 2093, 2201, 2819, 2933, 3684
SpeI	ACTAGT	2 cut(s)	3206, 3773
SphI	GCATGC	1 cut(s)	1564
SsiI	CCGC	8 cut(s)	130, 1474, 1608, 2140, 2239, 2519, 2755, 3407
SspMI	CTAG	8 cut(s)	369, 1377, 1437, 3207, 3254, 3774, 4116, 4189
StyD4I	CCNGG	9 cut(s)	830, 1087, 1125, 1183, 1836, 2067, 2176, 2665, 3676
StyI	CCWWGG	9 cut(s)	1310, 1768, 2628, 3434, 3831, 3850, 3987, 4076, 4121
TaiI	ACGT	5 cut(s)	736, 1123, 1650, 1794, 2011
TaqI	TCGA	8 cut(s)	305, 539, 1622, 2082, 2136, 2252, 3370, 3766
TatI	WGTACW	4 cut(s)	1669, 2101, 2693, 3173
TauI	GCSGC	3 cut(s)	2522, 2758, 3410
TfiI	GAWTC	8 cut(s)	859, 1212, 1282, 1319, 1423, 2181, 3536, 3586
TseFI	GTSAC	4 cut(s)	568, 1121, 1931, 2473
Tsp45I	GTSAC	4 cut(s)	568, 1121, 1931, 2473
TspGWI	ACGGA	7 cut(s)	686, 871, 1092, 3300, 3479, 3968, 4144
Van91I	CCANNNNNTGG	3 cut(s)	55, 4092, 4152
Vha464I	CTTAAG	2 cut(s)	389, 2201
VneI	GTGCAC	1 cut(s)	4156
VpaK11BI	GGWCC	5 cut(s)	77, 494, 625, 3673, 3680
VspI	ATTAAT	3 cut(s)	636, 780, 2964
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	7 cut(s)	32, 424, 936, 1342, 1406, 2313, 3224
XbaI	TCTAGA	1 cut(s)	3253
XceI	RCATGY	3 cut(s)	1564, 2376, 3196
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1123, 1775, 3355
XmiI	GTMKAC	1 cut(s)	2259
XmnI	GAANNNNTTC	3 cut(s)	154, 1240, 3225
XspI	CTAG	8 cut(s)	369, 1377, 1437, 3207, 3254, 3774, 4116, 4189
ZrmI	AGTACT	2 cut(s)	2103, 3175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.