FvH4_5g20000

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012319
Physical Location & Seq
Reverse (-)
11803102 .. 11805564
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20000.t1

Sequence Viewer

Length: 423 bp
ATGTTCATATCAAAGCAAGTCAAGCAATCCCTATACATCTCTGTATCTCTAGCACTAGTAATAATTGTAGTCCCACTCTTTCTCTCCCTCAATCCCTCAGCACCAGACTCAAAGCAAGAGAAAACCCCAATGGCCACCAACGCATTTGGCGTGAAGGTTGAAAAGAATCCAACTCAATCCCAACTCACTGAGCTTGGAGTCACCACATGGCCAAAGTGGGAATGCGGTCCAAGCAAATTCCCATGGAGCTTCACTGCTACAGAGACTATGTACTTGCTGAAGGGGAAGGTGAATGTAGAAGTAGACGGGCATGAAGGATCTTTTGAGATTGGGGCAGGTGATTTGGTTGTTTTCCCTAAAGGAATGAAGGTCACCTGGGATGTCATTGAAGGTGTGAACAAGCACTATAGCTTGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

141

Amino Acids

15.49

Weight (kDa)

6.73

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 63 - 136 5.8e-26 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 326
Acc36I ACCTGC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 303
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 2 cut(s) 132, 209
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 2 cut(s) 161, 389
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 3 cut(s) 193, 249, 411
AluI AGCT 3 cut(s) 193, 249, 411
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 325
AoxI GGCC 2 cut(s) 132, 209
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 193, 301, 350, 364
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 134, 211
BbvCI CCTCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 2 cut(s) 50, 56
BfmI CTRYAG 2 cut(s) 258, 406
BfuAI ACCTGC 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 242, 375
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 242, 375
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 111, 180
BshFI GGCC 2 cut(s) 134, 211
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 2 cut(s) 134, 211
Bsp143I GATC 1 cut(s) 317
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 134, 211
BspCNI CTCAG 2 cut(s) 110, 181
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 242, 375
BssMI GATC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 97, 189
BstDSI CCRYGG 1 cut(s) 242
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 320
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 22, 140, 231
BstNI CCWGG 1 cut(s) 376
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 2 cut(s) 258, 406
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 2 cut(s) 134, 211
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 186, 252
BveI ACCTGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 207, 243, 311
CviJI RGCY 5 cut(s) 134, 193, 211, 249, 411
CviKI_1 RGCY 5 cut(s) 134, 193, 211, 249, 411
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 97, 189
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 132, 209
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 3 cut(s) 210, 246, 314
FaiI YATR 7 cut(s) 8, 34, 208, 244, 269, 312, 408
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 206, 242, 310
FblI GTMKAC 1 cut(s) 303
FokI GGATG 1 cut(s) 392
FspBI CTAG 2 cut(s) 50, 56
HaeIII GGCC 2 cut(s) 134, 211
Hin1II CATG 3 cut(s) 210, 246, 314
HinfI GANTC 3 cut(s) 107, 166, 198
HphI GGTGA 4 cut(s) 193, 301, 350, 364
Hpy166II GTNNAC 2 cut(s) 304, 397
Hpy8I GTNNAC 2 cut(s) 304, 397
HpyAV CCTTC 6 cut(s) 148, 274, 280, 308, 361, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 140, 231
HpyF3I CTNAG 2 cut(s) 97, 189
Hsp92II CATG 3 cut(s) 210, 246, 314
Kzo9I GATC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 4 cut(s) 117, 321, 361, 388
MaeI CTAG 2 cut(s) 50, 56
MaeIII GTNAC 2 cut(s) 199, 370
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MflI RGATCY 1 cut(s) 317
MlsI TGGCCA 2 cut(s) 134, 211
MluCI AATT 2 cut(s) 63, 236
MluNI TGGCCA 2 cut(s) 134, 211
MlyI GAGTC 2 cut(s) 101, 207
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 2 cut(s) 98, 106
Mox20I TGGCCA 2 cut(s) 134, 211
MscI TGGCCA 2 cut(s) 134, 211
Msp20I TGGCCA 2 cut(s) 134, 211
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 22, 140, 231
NcoI CCATGG 1 cut(s) 242
NdeII GATC 1 cut(s) 317
NlaIII CATG 3 cut(s) 210, 246, 314
NmuCI GTSAC 2 cut(s) 199, 370
PaqCI CACCTGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 166
PleI GAGTC 2 cut(s) 101, 206
PpsI GAGTC 2 cut(s) 101, 206
Psp6I CCWGG 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 317
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
Sau3AI GATC 1 cut(s) 317
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 101, 207
ScrFI CCNGG 1 cut(s) 376
SetI ASST 9 cut(s) 159, 195, 251, 291, 340, 372, 377, 394, 413
SfcI CTRYAG 2 cut(s) 258, 406
SinI GGWCC 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 2 cut(s) 63, 236
SsiI CCGC 1 cut(s) 225
SspMI CTAG 2 cut(s) 50, 56
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 242
TasI AATT 2 cut(s) 63, 236
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 2 cut(s) 193, 259
TseFI GTSAC 2 cut(s) 199, 370
Tsp45I GTSAC 2 cut(s) 199, 370
TspDTI ATGAA 2 cut(s) 327, 380
TspRI CASTG 2 cut(s) 193, 259
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 2 cut(s) 50, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.