RLG00000017011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012319
Physical Location & Seq
Forward (+)
12086672 .. 12087763
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017011

Sequence Viewer

Length: 492 bp
ATGGATTTCAAGGAGGCGATGGTTCTGGGGGCGATGAGACTTCTTGACTTCCGAGCAGCTTTGGTGGACACGCGCGGTTACCAAACCGCGGCTGATTATTGGATGGGTACAGTTGACATGGGAGGCAGTGAGGCACGCCGATTCGAAGCTTCTTCCATTAAACCACCTGCAGAACAGAAACAACCGGTCGGCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGCAGAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCCCATTCTGGCCTACACTTCCGTCTGCCAGGGCAGAGATTGAGCAACTGCAGTGGTGTTCTTCTCAGCCCGATTGCGGCTGAGCCGAAGCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGGGGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

10.6

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccII CGCG 3 cut(s) 73, 75, 89
AciI CCGC 6 cut(s) 75, 87, 89, 205, 428, 452
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 6 cut(s) 88, 260, 307, 308, 339, 427
AgeI ACCGGT 1 cut(s) 184
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 2 cut(s) 59, 149
AluI AGCT 2 cut(s) 59, 149
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 345
AoxI GGCC 6 cut(s) 239, 263, 298, 326, 344, 361
ApeKI GCWGC 1 cut(s) 56
AsiGI ACCGGT 1 cut(s) 184
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 263, 299, 311, 326
AsuC2I CCSGG 2 cut(s) 284, 483
AsuHPI GGTGA 1 cut(s) 478
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 346
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 13, 97
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 381
BcnI CCSGG 2 cut(s) 284, 483
BcoDI GTCTC 1 cut(s) 31
BfmI CTRYAG 2 cut(s) 168, 400
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 4 cut(s) 57, 90, 429, 452
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 4 cut(s) 58, 91, 430, 453
Bme1390I CCNGG 3 cut(s) 284, 381, 483
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 263, 299, 311, 326
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 3 cut(s) 284, 381, 483
Bpu1102I GCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 144
BpuMI CCSGG 2 cut(s) 284, 483
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 6 cut(s) 87, 283, 322, 380, 473, 482
BsaWI WCCGGW 2 cut(s) 184, 220
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 260, 307, 308, 339, 427
Bse118I RCCGGY 1 cut(s) 184
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 6 cut(s) 87, 283, 322, 380, 473, 482
BseGI GGATG 3 cut(s) 108, 201, 217
BseLI CCNNNNNNNGG 6 cut(s) 88, 260, 307, 308, 339, 427
BseMII CTCAG 2 cut(s) 423, 430
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 3 cut(s) 73, 75, 89
Bsh1285I CGRYCG 2 cut(s) 189, 225
BshFI GGCC 6 cut(s) 241, 265, 300, 328, 346, 363
BshTI ACCGGT 1 cut(s) 184
BsiEI CGRYCG 2 cut(s) 189, 225
BsiSI CCGG 5 cut(s) 185, 221, 283, 455, 482
BslFI GGGAC 2 cut(s) 300, 324
BslI CCNNNNNNNGG 6 cut(s) 88, 260, 307, 308, 339, 427
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 300, 324
BsnI GGCC 6 cut(s) 241, 265, 300, 328, 346, 363
Bsp119I TTCGAA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 350, 461
Bsp1720I GCTNAGC 1 cut(s) 432
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 6 cut(s) 75, 87, 89, 205, 428, 452
BspANI GGCC 6 cut(s) 241, 265, 300, 328, 346, 363
BspCNI CTCAG 2 cut(s) 424, 429
BspFNI CGCG 3 cut(s) 73, 75, 89
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 2 cut(s) 172, 404
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 6 cut(s) 87, 283, 322, 380, 473, 482
BssMI GATC 2 cut(s) 350, 461
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 136, 243
BstDEI CTNAG 2 cut(s) 416, 432
BstDSI CCRYGG 2 cut(s) 87, 322
BstEII GGTNACC 2 cut(s) 77, 477
BstF5I GGATG 3 cut(s) 108, 201, 217
BstFNI CGCG 3 cut(s) 73, 75, 89
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 353, 464
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 350, 461
BstMCI CGRYCG 2 cut(s) 189, 225
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 381
BstPI GGTNACC 2 cut(s) 77, 477
BstSCI CCNGG 3 cut(s) 282, 379, 481
BstSFI CTRYAG 2 cut(s) 168, 400
BstUI CGCG 3 cut(s) 73, 75, 89
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 6 cut(s) 241, 265, 300, 328, 346, 363
BtgI CCRYGG 2 cut(s) 87, 322
BtgZI GCGATG 2 cut(s) 32, 47
BtsCI GGATG 3 cut(s) 108, 201, 217
BtsI GCAGTG 3 cut(s) 133, 277, 409
BtsIMutI CAGTG 3 cut(s) 133, 277, 409
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 136, 243
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 4 cut(s) 263, 299, 311, 326
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 2 cut(s) 181, 234
Csp6I GTAC 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 2 cut(s) 118, 323
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 416, 432
DpnI GATC 2 cut(s) 352, 463
DpnII GATC 2 cut(s) 350, 461
EaeI YGGCCR 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 311
Eco91I GGTNACC 2 cut(s) 77, 477
EcoO109I RGGNCCY 2 cut(s) 299, 311
EcoO65I GGTNACC 2 cut(s) 77, 477
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 121, 326
FaiI YATR 2 cut(s) 119, 324
FaqI GGGAC 2 cut(s) 300, 324
FatI CATG 2 cut(s) 117, 322
Fnu4HI GCNGC 4 cut(s) 57, 90, 429, 452
FokI GGATG 3 cut(s) 115, 188, 204
Fsp4HI GCNGC 4 cut(s) 57, 90, 429, 452
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 57, 90, 429, 452
HaeIII GGCC 6 cut(s) 241, 265, 300, 328, 346, 363
HapII CCGG 5 cut(s) 185, 221, 283, 455, 482
HgaI GACGC 2 cut(s) 181, 234
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 121, 326
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 2 cut(s) 141, 291
HpaII CCGG 5 cut(s) 185, 221, 283, 455, 482
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 67, 115
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 67, 115
Hpy99I CGWCG 2 cut(s) 230, 339
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 170, 235, 277, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 2 cut(s) 416, 432
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 121, 326
HspAI GCGC 1 cut(s) 73
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 350, 461
Lsp1109I GCAGC 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 77, 477
MalI GATC 2 cut(s) 352, 463
MboI GATC 2 cut(s) 350, 461
MboII GAAGA 2 cut(s) 144, 404
MlsI TGGCCA 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 185, 221, 283, 455, 482
MspR9I CCNGG 3 cut(s) 284, 381, 483
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 3 cut(s) 73, 75, 89
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 2 cut(s) 284, 483
NcoI CCATGG 1 cut(s) 322
NdeII GATC 2 cut(s) 350, 461
NlaIII CATG 2 cut(s) 121, 326
NlaIV GGNNCC 1 cut(s) 312
NspV TTCGAA 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 470
PfeI GAWTC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 184
PkrI GCNGC 4 cut(s) 58, 91, 430, 453
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 379
PspEI GGTNACC 2 cut(s) 77, 477
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 4 cut(s) 263, 299, 311, 326
PspPPI RGGWCCY 1 cut(s) 311
PstI CTGCAG 2 cut(s) 172, 404
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 4 cut(s) 57, 90, 429, 452
Sau3AI GATC 2 cut(s) 350, 461
Sau96I GGNCC 4 cut(s) 263, 299, 311, 326
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 3 cut(s) 284, 381, 483
SetI ASST 5 cut(s) 61, 151, 169, 316, 479
SfcI CTRYAG 2 cut(s) 168, 400
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 311
SsiI CCGC 6 cut(s) 75, 87, 89, 205, 428, 452
StyD4I CCNGG 3 cut(s) 282, 379, 481
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 4 cut(s) 144, 198, 228, 337
TauI GCSGC 3 cut(s) 92, 431, 454
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 3 cut(s) 133, 284, 409
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 3 cut(s) 133, 284, 409
VpaK11BI GGWCC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.