Rmu_co8494705.1_g000001

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8494705.1
OG0012319
Physical Location & Seq
Reverse (-)
1 .. 393
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8494705.1_g000001.1.cds

Sequence Viewer

Length: 212 bp
atgaccaggtgggagtgtggtccaagcaaattcccatggagtttcactgctacagagactatgtatctgctaaaggggaaggtgaatgtacaagttgacgggcatgaaggatcttttgagattggggccggtcatttggttgtgttccctaaaggaatgaaggtcacctgggatgtcattgaaggcgtgaacaagcattatagcttggagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

70

Amino Acids

7.9

Weight (kDa)

6.26

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 2 cut(s) 5, 167
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 20, 126
AsuHPI GGTGA 2 cut(s) 94, 157
AvaII GGWCC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 7, 169
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 7, 169
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 20, 126
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 7, 169
BsaJI CCNNGG 2 cut(s) 35, 168
Bse118I RCCGGY 1 cut(s) 128
BseBI CCWGG 2 cut(s) 7, 169
BseDI CCNNGG 2 cut(s) 35, 168
BseGI GGATG 1 cut(s) 178
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 35
BspANI GGCC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 35, 168
BssMI GATC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 7, 169
BstAUI TGTACA 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 35
BstEII GGTNACC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 7, 169
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 5, 167
BstSFI CTRYAG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 20, 126
CsiI ACCWGGT 1 cut(s) 5
Csp6I GTAC 1 cut(s) 89
CviAII CATG 2 cut(s) 36, 104
CviJI RGCY 2 cut(s) 128, 204
CviKI_1 RGCY 2 cut(s) 128, 204
CviQI GTAC 1 cut(s) 89
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 5, 167
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 39, 107
FaiI YATR 4 cut(s) 37, 62, 105, 201
FatI CATG 2 cut(s) 35, 103
FokI GGATG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 39, 107
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 94, 157
Hpy166II GTNNAC 2 cut(s) 97, 190
Hpy8I GTNNAC 2 cut(s) 97, 190
HpyAV CCTTC 4 cut(s) 73, 101, 154, 176
Hsp92II CATG 2 cut(s) 39, 107
Kzo9I GATC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 19, 142, 154, 181
MabI ACCWGGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MflI RGATCY 1 cut(s) 110
MluCI AATT 1 cut(s) 29
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 7, 169
MvaI CCWGG 2 cut(s) 7, 169
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 110
NlaIII CATG 2 cut(s) 39, 107
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 5, 167
PspEI GGTNACC 1 cut(s) 163
PspGI CCWGG 2 cut(s) 5, 167
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 20, 126
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 2 cut(s) 20, 126
ScrFI CCNGG 2 cut(s) 7, 169
SetI ASST 5 cut(s) 11, 84, 165, 170, 206
SexAI ACCWGGT 1 cut(s) 5
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 20
Sse9I AATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 5, 167
StyI CCWWGG 1 cut(s) 35
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 88
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 120, 173
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.