Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012319

Physical Location & Seq

Genomic Coordinates Forward (+)

6814076 .. 6816845

Gene Structure 2770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTTTCAATTCTTCTCAAAGCAAAAGCAATCCCAAATACTTGCTCTAATGCTAGTAGTTGCAGTCCCTCTGTATTTCTCCTTCAATTTTACACAACCCAGACCGAAAGCAATCACTTCATCCGGGTCTGAAGAAGAAACTCCCATGGCCGCCAACGAATTTGGTGTAAAAGTTGAAAAAAATCCCACTCAATCCAAACTGACTGAGCTTGGAGTCGCAACTTGGCCCAAGTGGAGTTGTGGTCCAAGCAAATTTCCATGGTCATTCAGTGCCACGGAGACTATGTATCTGCTGGAGGGGAAAGTGAATGTTGAAGTTGATGGGAAAGAAGGATCTTTCACAATCGGGGCCGGTGATTTTGTTGTCTTCCCTAAAGGAATGAAGGTCACTTGGGATGTCATTGAAGCTGTGAACAAGCATTATAGCTTGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

146

Amino Acids

16.19

Weight (kDa)

5.51

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_3	PF05899	68 - 141	3.3e-26	EutQ-like cupin domain
Cupin_2	PF07883	92 - 127	6.2e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10280
fragaria_vesca	FvH4_5g20000
malus_domestica	MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica	Prupe.5G060300_v2.0.a1
pyrus_communis	pycom04g04400
rosa_chinensis	RchiOBHm_Chr7g0204821
rosa_laevigata	RLG00000003430 RLG00000017011
rosa_multiflora	Rmu_co8494705.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252740
rosa_rugosa	Rorug07G0086000
rosa_samantha	Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana	Rw7G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	158, 251
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	8, 85, 176, 314, 404
AluBI	AGCT	3 cut(s)	208, 407, 426
AluI	AGCT	3 cut(s)	208, 407, 426
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	3 cut(s)	147, 224, 348
ApoI	RAATTY	2 cut(s)	158, 251
AspS9I	GGNCC	3 cut(s)	225, 242, 348
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	1 cut(s)	358
BccI	CCATC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	225, 242, 348
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	144, 257, 273
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 269, 299
Bse118I	RCCGGY	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	144, 257, 273
BseGI	GGATG	2 cut(s)	119, 400
BseMII	CTCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	149, 226, 350
BsiSI	CCGG	2 cut(s)	123, 351
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	149, 226, 350
Bsp143I	GATC	1 cut(s)	332
Bsp19I	CCATGG	2 cut(s)	144, 257
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	149, 226, 350
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	144, 257, 273
BssMI	GATC	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	144, 257
Bst6I	CTCTTC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	3 cut(s)	144, 257, 273
BstF5I	GGATG	2 cut(s)	119, 400
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	149, 226, 350
BtgI	CCRYGG	3 cut(s)	144, 257, 273
BtsCI	GGATG	2 cut(s)	119, 400
BtsIMutI	CAGTG	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	225, 242, 348
CviAII	CATG	2 cut(s)	145, 258
CviJI	RGCY	6 cut(s)	149, 208, 226, 350, 407, 426
CviKI_1	RGCY	6 cut(s)	149, 208, 226, 350, 407, 426
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	144, 257
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	144, 257
ErhI	CCWWGG	2 cut(s)	144, 257
FaeI	CATG	2 cut(s)	148, 261
FaiI	YATR	4 cut(s)	146, 259, 284, 423
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	144, 257
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	106, 407
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	149, 226, 350
HapII	CCGG	2 cut(s)	123, 351
Hin1II	CATG	2 cut(s)	148, 261
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	123, 351
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	91, 323, 376
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	148, 261
Kzo9I	GATC	1 cut(s)	332
LpnPI	CCDG	4 cut(s)	112, 136, 278, 364
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	4, 143, 146, 358
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	4 cut(s)	8, 85, 158, 251
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	78, 289
MspI	CCGG	2 cut(s)	123, 351
MspR9I	CCNGG	1 cut(s)	124
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	2 cut(s)	144, 257
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	2 cut(s)	148, 261
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	225, 242, 348
PsuI	RGATCY	1 cut(s)	332
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	3 cut(s)	225, 242, 348
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	4 cut(s)	210, 387, 409, 428
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	4 cut(s)	8, 85, 158, 251
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	2 cut(s)	144, 257
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	8, 85, 158, 251
TauI	GCSGC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	108, 395
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	158, 251
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.