Rh4DG119500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012319
Physical Location & Seq
Forward (+)
18947695 .. 18947982
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG119500.1

Sequence Viewer

Length: 288 bp
ATGGGATGGGTACAGTTCAGATACACATGGGTGGCAGTGAGGCACGCCGATTCGAACCATCTGCAGAACAGAGACAACCGGTCGGCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGGCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCGCATTCTGGCCTACACTTCCGTCTGCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

12.0

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 4 cut(s) 208, 209, 240, 280
AgeI ACCGGT 1 cut(s) 78
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 6 cut(s) 140, 164, 199, 227, 245, 262
AsiGI ACCGGT 1 cut(s) 78
AspS9I GGNCC 4 cut(s) 164, 200, 212, 227
AsuC2I CCSGG 2 cut(s) 185, 282
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 247
BanI GGYRCC 1 cut(s) 134
BccI CCATC 1 cut(s) 66
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 139
BcnI CCSGG 2 cut(s) 185, 282
BcoDI GTCTC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 139, 185, 282
Bme18I GGWCC 1 cut(s) 212
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 4 cut(s) 164, 200, 212, 227
BmiI GGNNCC 2 cut(s) 136, 213
BmrFI CCNGG 3 cut(s) 139, 185, 282
Bpu14I TTCGAA 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 185, 282
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 184, 223, 281
BsaWI WCCGGW 2 cut(s) 78, 114
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 209, 240, 280
Bse118I RCCGGY 1 cut(s) 78
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 184, 223, 281
BseGI GGATG 3 cut(s) 11, 95, 111
BseLI CCNNNNNNNGG 4 cut(s) 208, 209, 240, 280
BseRI GAGGAG 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 161
Bsh1285I CGRYCG 3 cut(s) 83, 119, 254
BshFI GGCC 6 cut(s) 142, 166, 201, 229, 247, 264
BshNI GGYRCC 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 78
BsiEI CGRYCG 3 cut(s) 83, 119, 254
BsiSI CCGG 4 cut(s) 79, 115, 184, 281
BslFI GGGAC 2 cut(s) 201, 225
BslI CCNNNNNNNGG 4 cut(s) 208, 209, 240, 280
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 201, 225
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 6 cut(s) 142, 166, 201, 229, 247, 264
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 1 cut(s) 99
BspANI GGCC 6 cut(s) 142, 166, 201, 229, 247, 264
BspLI GGNNCC 2 cut(s) 136, 213
BspMAI CTGCAG 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 184, 223, 281
BssMI GATC 1 cut(s) 251
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 45, 144
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 11, 95, 111
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 251
BstMCI CGRYCG 3 cut(s) 83, 119, 254
BstMWI GCNNNNNNNGC 2 cut(s) 152, 253
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 3 cut(s) 137, 183, 280
BstSFI CTRYAG 1 cut(s) 62
BsuRI GGCC 6 cut(s) 142, 166, 201, 229, 247, 264
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 11, 95, 111
BtsI GCAGTG 2 cut(s) 42, 178
BtsIMutI CAGTG 2 cut(s) 42, 178
Cac8I GCNNGC 2 cut(s) 45, 144
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 4 cut(s) 164, 200, 212, 227
CseI GACGC 2 cut(s) 75, 135
Csp6I GTAC 1 cut(s) 11
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 2 cut(s) 27, 224
CviJI RGCY 6 cut(s) 142, 166, 201, 229, 247, 264
CviKI_1 RGCY 6 cut(s) 142, 166, 201, 229, 247, 264
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 200, 212
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 30, 227
FaiI YATR 2 cut(s) 28, 225
FaqI GGGAC 2 cut(s) 201, 225
FatI CATG 2 cut(s) 26, 223
FokI GGATG 3 cut(s) 18, 82, 98
HaeIII GGCC 6 cut(s) 142, 166, 201, 229, 247, 264
HapII CCGG 4 cut(s) 79, 115, 184, 281
HgaI GACGC 2 cut(s) 75, 135
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 30, 227
HinfI GANTC 2 cut(s) 50, 192
HpaII CCGG 4 cut(s) 79, 115, 184, 281
Hpy188I TCNGA 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 124, 240
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 64, 129, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 253
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 30, 227
Kzo9I GATC 1 cut(s) 251
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 247
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 7 cut(s) 33, 100, 125, 213, 225, 230, 233
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 247
MspI CCGG 4 cut(s) 79, 115, 184, 281
MspR9I CCNGG 3 cut(s) 139, 185, 282
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 152, 253
NciI CCSGG 2 cut(s) 185, 282
NcoI CCATGG 1 cut(s) 223
NdeII GATC 1 cut(s) 251
NlaIII CATG 2 cut(s) 30, 227
NlaIV GGNNCC 2 cut(s) 136, 213
NspV TTCGAA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 78
Ple19I CGATCG 1 cut(s) 254
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 136, 213
PspPI GGNCC 4 cut(s) 164, 200, 212, 227
PspPPI RGGWCCY 1 cut(s) 212
PstI CTGCAG 1 cut(s) 66
PvuI CGATCG 1 cut(s) 254
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 29
Sau3AI GATC 1 cut(s) 251
Sau96I GGNCC 4 cut(s) 164, 200, 212, 227
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 139, 185, 282
SetI ASST 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 29
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 137, 183, 280
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 53, 92, 122, 238
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 2 cut(s) 42, 185
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 42, 185
VpaK11BI GGWCC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.