Rh2CG328500

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012319
Physical Location & Seq
Forward (+)
42856044 .. 42858192
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG328500.1

Sequence Viewer

Length: 588 bp
ATGTATCTGCTAAAGGGGAAGGTGAATGTACAAGTTGACGGGCATGAAGGATCTTTTGAGATTGGGGCTGGTGATTTGGTTGTGTTCCCTAAAGGAATGAAGGTCACCTGGGATGTCATTGAAGGCGTGAACAAGCACTATAGCTTGGAGAAGTCCACCTGCACCAAGCCATTACGGTGCGTCTGTAGGACACGCGCGGTGACCAAACCGCGACTGATTATTGGATGGGTACAGTTGACATGGGAGGCAGTGAGGCACGCTGATTCGAAGCCTCTTCCATTAAACCACCTGCAGAACAGAGATAACCGGTCGGCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCATCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCCCACTATGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGAGCAACTGCAGTGGTGTTCTTCTCAGCCCGATTGCGGCGGAGCCGAAGCCGACTTTGCCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

195

Amino Acids

21.48

Weight (kDa)

10.5

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 2 - 47 2.3e-13 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 167, 297
Acc36I ACCTGC 2 cut(s) 167, 297
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 3 cut(s) 195, 197, 211
AciI CCGC 5 cut(s) 197, 209, 327, 557, 560
AclWI GGATC 2 cut(s) 58, 474
AcoI YGGCCR 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 30, 231
AfiI CCNNNNNNNGG 6 cut(s) 389, 436, 437, 468, 508, 556
AgeI ACCGGT 1 cut(s) 306
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 2 cut(s) 107, 365
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwI GGATC 2 cut(s) 58, 474
AoxI GGCC 6 cut(s) 368, 392, 427, 455, 473, 490
AsiGI ACCGGT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 4 cut(s) 392, 428, 440, 455
AsuC2I CCSGG 2 cut(s) 413, 510
AsuHPI GGTGA 4 cut(s) 34, 83, 97, 211
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 475
BanI GGYRCC 1 cut(s) 362
BccI CCATC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 109, 367
BcnI CCSGG 2 cut(s) 413, 510
BfmI CTRYAG 4 cut(s) 139, 184, 290, 529
BfuAI ACCTGC 2 cut(s) 167, 297
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 4 cut(s) 109, 367, 413, 510
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 4 cut(s) 392, 428, 440, 455
BmiI GGNNCC 3 cut(s) 364, 441, 564
BmrFI CCNGG 4 cut(s) 109, 367, 413, 510
Bpu14I TTCGAA 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 413, 510
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 4 cut(s) 108, 412, 451, 509
BsaWI WCCGGW 2 cut(s) 306, 342
BsaXI ACNNNNNCTCC 3 cut(s) 432, 462, 565
Bsc4I CCNNNNNNNGG 6 cut(s) 389, 436, 437, 468, 508, 556
Bse118I RCCGGY 1 cut(s) 306
BseBI CCWGG 2 cut(s) 109, 367
BseDI CCNNGG 4 cut(s) 108, 412, 451, 509
BseGI GGATG 4 cut(s) 118, 230, 323, 339
BseLI CCNNNNNNNGG 6 cut(s) 389, 436, 437, 468, 508, 556
BseMII CTCAG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 437
BsgI GTGCAG 2 cut(s) 145, 389
Bsh1236I CGCG 3 cut(s) 195, 197, 211
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 6 cut(s) 370, 394, 429, 457, 475, 492
BshNI GGYRCC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 311
BsiSI CCGG 4 cut(s) 307, 343, 412, 509
BslFI GGGAC 2 cut(s) 429, 453
BslI CCNNNNNNNGG 6 cut(s) 389, 436, 437, 468, 508, 556
BsmFI GGGAC 2 cut(s) 429, 453
BsnI GGCC 6 cut(s) 370, 394, 429, 457, 475, 492
Bsp119I TTCGAA 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 2 cut(s) 50, 479
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 5 cut(s) 197, 209, 327, 557, 560
BspANI GGCC 6 cut(s) 370, 394, 429, 457, 475, 492
BspCNI CTCAG 1 cut(s) 558
BspFNI CGCG 3 cut(s) 195, 197, 211
BspLI GGNNCC 3 cut(s) 364, 441, 564
BspMAI CTGCAG 2 cut(s) 294, 533
BspMI ACCTGC 2 cut(s) 167, 297
BspPI GGATC 2 cut(s) 58, 474
BspT104I TTCGAA 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 4 cut(s) 108, 412, 451, 509
BssMI GATC 2 cut(s) 50, 479
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 109, 367
Bst4CI ACNGT 2 cut(s) 177, 234
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 258, 372
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 1 cut(s) 451
BstEII GGTNACC 2 cut(s) 103, 199
BstF5I GGATG 4 cut(s) 118, 230, 323, 339
BstFNI CGCG 3 cut(s) 195, 197, 211
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 53, 482
BstMBI GATC 2 cut(s) 50, 479
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNI CCWGG 2 cut(s) 109, 367
BstPI GGTNACC 2 cut(s) 103, 199
BstSCI CCNGG 4 cut(s) 107, 365, 411, 508
BstSFI CTRYAG 4 cut(s) 139, 184, 290, 529
BstUI CGCG 3 cut(s) 195, 197, 211
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 6 cut(s) 370, 394, 429, 457, 475, 492
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 4 cut(s) 118, 230, 323, 339
BtsI GCAGTG 3 cut(s) 255, 406, 538
BtsIMutI CAGTG 3 cut(s) 255, 406, 538
BveI ACCTGC 2 cut(s) 167, 297
Cac8I GCNNGC 2 cut(s) 258, 372
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 392, 428, 440, 455
CseI GACGC 3 cut(s) 169, 303, 363
Csp6I GTAC 2 cut(s) 29, 230
CspAI ACCGGT 1 cut(s) 306
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 3 cut(s) 44, 240, 452
CviQI GTAC 2 cut(s) 29, 230
DdeI CTNAG 1 cut(s) 545
DpnI GATC 2 cut(s) 52, 481
DpnII GATC 2 cut(s) 50, 479
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 440
Eco91I GGTNACC 2 cut(s) 103, 199
EcoO109I RGGNCCY 2 cut(s) 428, 440
EcoO65I GGTNACC 2 cut(s) 103, 199
EcoRII CCWGG 2 cut(s) 107, 365
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 3 cut(s) 47, 243, 455
FaiI YATR 5 cut(s) 45, 141, 241, 453, 489
FaqI GGGAC 2 cut(s) 429, 453
FatI CATG 3 cut(s) 43, 239, 451
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 4 cut(s) 125, 237, 310, 326
Fsp4HI GCNGC 1 cut(s) 558
GlaI GCGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 558
HaeIII GGCC 6 cut(s) 370, 394, 429, 457, 475, 492
HapII CCGG 4 cut(s) 307, 343, 412, 509
HgaI GACGC 3 cut(s) 169, 303, 363
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 3 cut(s) 47, 243, 455
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 37, 237
HindII GTYRAC 2 cut(s) 37, 237
HinfI GANTC 2 cut(s) 263, 420
HpaII CCGG 4 cut(s) 307, 343, 412, 509
HphI GGTGA 4 cut(s) 34, 83, 97, 211
Hpy166II GTNNAC 4 cut(s) 37, 130, 156, 237
Hpy8I GTNNAC 4 cut(s) 37, 130, 156, 237
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 4 cut(s) 13, 41, 94, 116
HpyCH4III ACNGT 2 cut(s) 177, 234
HpyCH4V TGCA 5 cut(s) 162, 292, 357, 406, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 1 cut(s) 545
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 3 cut(s) 47, 243, 455
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 50, 479
LmnI GCTCC 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 103, 199
MalI GATC 2 cut(s) 52, 481
MboI GATC 2 cut(s) 50, 479
MboII GAAGA 2 cut(s) 266, 533
MflI RGATCY 1 cut(s) 50
MlsI TGGCCA 1 cut(s) 475
MluNI TGGCCA 1 cut(s) 475
MlyI GAGTC 1 cut(s) 414
MnlI CCTC 9 cut(s) 238, 246, 282, 328, 353, 441, 453, 458, 461
Mox20I TGGCCA 1 cut(s) 475
MscI TGGCCA 1 cut(s) 475
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 475
MspI CCGG 4 cut(s) 307, 343, 412, 509
MspR9I CCNGG 4 cut(s) 109, 367, 413, 510
MvaI CCWGG 2 cut(s) 109, 367
MvnI CGCG 3 cut(s) 195, 197, 211
MwoI GCNNNNNNNGC 1 cut(s) 577
NciI CCSGG 2 cut(s) 413, 510
NcoI CCATGG 1 cut(s) 451
NdeII GATC 2 cut(s) 50, 479
NlaIII CATG 3 cut(s) 47, 243, 455
NlaIV GGNNCC 3 cut(s) 364, 441, 564
NmuCI GTSAC 2 cut(s) 103, 199
NspV TTCGAA 1 cut(s) 266
PaqCI CACCTGC 2 cut(s) 167, 297
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PfeI GAWTC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 306
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 107, 365
PspEI GGTNACC 2 cut(s) 103, 199
PspGI CCWGG 2 cut(s) 107, 365
PspN4I GGNNCC 3 cut(s) 364, 441, 564
PspPI GGNCC 4 cut(s) 392, 428, 440, 455
PspPPI RGGWCCY 1 cut(s) 440
PstI CTGCAG 2 cut(s) 294, 533
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 2 cut(s) 30, 231
RsaNI GTAC 2 cut(s) 29, 230
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 2 cut(s) 50, 479
Sau96I GGNCC 4 cut(s) 392, 428, 440, 455
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 4 cut(s) 109, 367, 413, 510
SetI ASST 7 cut(s) 24, 105, 110, 146, 161, 291, 445
SfcI CTRYAG 4 cut(s) 139, 184, 290, 529
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 175
SsiI CCGC 5 cut(s) 197, 209, 327, 557, 560
StyD4I CCNGG 4 cut(s) 107, 365, 411, 508
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 177, 234
TaqI TCGA 4 cut(s) 266, 320, 350, 466
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 3 cut(s) 255, 413, 538
TseFI GTSAC 2 cut(s) 103, 199
Tsp45I GTSAC 2 cut(s) 103, 199
TspDTI ATGAA 2 cut(s) 60, 113
TspGWI ACGGA 2 cut(s) 491, 573
TspRI CASTG 3 cut(s) 255, 413, 538
VpaK11BI GGWCC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.