RLG00000003430

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012319
Physical Location & Seq
Forward (+)
48304646 .. 48308749
4104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003430

Sequence Viewer

Length: 534 bp
ATGGCCACCAACACATTTGGAGTCAAGGTCGAAAAGAATCCAACTCAATCCCAACTGACTGAGCTTGGAGTCACCACATGGCCAAAGTGGGAGTGTGGTCCAAGCAAATTCCCATGGAGTTTCACTGCTACAGAGACTATGTATCTGCTAAAGGGGAAGGTGAATGTACAAGTTGACGGGCATGAAGGATCTTTTGAGATTGGGGCTGGTGATTTGGTTGTGTTCCCTAAAGGAATGAAGGTCACCTGGGATGTCATTGAAGGCGTGAACAAGCATTATAGCTTGGAGAAGAAGCTACAGAGTGGTGATCATTTGGTTGGTGAGGTGGGGATGTGGTCCAAGAAAATTTCCATACTGTCACAGCCAGAGACTCACAGAGGCTATATATCTGCTACAGGGAAGGTGCATGTGATTGTTGACGGGCATGAAGGATCTTTTGAAATTGGGGCTGGTGATTTGGTTGTGTTCCCTAAAGGAATGAAGGTCACGTGGGATGCCACTGAAACTGTGAAGAAGCACTATTATATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

178

Amino Acids

19.6

Weight (kDa)

6.65

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 20 - 93 1.1e-25 EutQ-like cupin domain
Cupin_3 PF05899 132 - 174 4.2e-12 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 196, 439
AcoI YGGCCR 2 cut(s) 3, 80
AcsI RAATTY 2 cut(s) 107, 345
AcvI CACGTG 1 cut(s) 489
AfaI GTAC 1 cut(s) 168
AgsI TTSAA 2 cut(s) 260, 440
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 64, 282, 295
AluI AGCT 3 cut(s) 64, 282, 295
Alw26I GTCTC 2 cut(s) 128, 362
AlwI GGATC 2 cut(s) 196, 439
AoxI GGCC 2 cut(s) 3, 80
ApoI RAATTY 2 cut(s) 107, 345
AspS9I GGNCC 2 cut(s) 98, 336
AsuHPI GGTGA 7 cut(s) 64, 172, 221, 235, 317, 332, 464
AvaII GGWCC 2 cut(s) 98, 336
BalI TGGCCA 2 cut(s) 5, 82
BbrPI CACGTG 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 247
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 128, 362
BfmI CTRYAG 3 cut(s) 129, 296, 393
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 98, 336
BmgT120I GGNCC 2 cut(s) 98, 336
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 484
BsaAI YACGTR 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 113, 246
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 113, 246
BseGI GGATG 3 cut(s) 256, 336, 499
BseMII CTCAG 1 cut(s) 51
BshFI GGCC 2 cut(s) 5, 82
BsmAI GTCTC 2 cut(s) 128, 362
BsnI GGCC 2 cut(s) 5, 82
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 3 cut(s) 188, 307, 431
Bsp19I CCATGG 1 cut(s) 113
BspANI GGCC 2 cut(s) 5, 82
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 196, 439
BsrGI TGTACA 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 113, 246
BssMI GATC 3 cut(s) 188, 307, 431
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 357, 508
BstAUI TGTACA 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 3 cut(s) 256, 336, 499
BstKTI GATC 3 cut(s) 191, 310, 434
BstMAI GTCTC 2 cut(s) 128, 362
BstMBI GATC 3 cut(s) 188, 307, 431
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 3 cut(s) 129, 296, 393
BstX2I RGATCY 2 cut(s) 188, 431
BstYI RGATCY 2 cut(s) 188, 431
BsuRI GGCC 2 cut(s) 5, 82
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 3 cut(s) 256, 336, 499
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 498
Cfr13I GGNCC 2 cut(s) 98, 336
Csp6I GTAC 1 cut(s) 167
CviAII CATG 5 cut(s) 78, 114, 182, 407, 425
CviJI RGCY 9 cut(s) 5, 64, 82, 206, 282, 295, 364, 381, 449
CviKI_1 RGCY 9 cut(s) 5, 64, 82, 206, 282, 295, 364, 381, 449
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 190, 309, 433
DpnII GATC 3 cut(s) 188, 307, 431
EaeI YGGCCR 2 cut(s) 3, 80
Eco130I CCWWGG 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 98, 336
Eco72I CACGTG 1 cut(s) 489
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 5 cut(s) 81, 117, 185, 410, 428
FatI CATG 5 cut(s) 77, 113, 181, 406, 424
FbaI TGATCA 1 cut(s) 307
FokI GGATG 3 cut(s) 263, 343, 506
HaeIII GGCC 2 cut(s) 5, 82
Hin1II CATG 5 cut(s) 81, 117, 185, 410, 428
HincII GTYRAC 2 cut(s) 175, 418
HindII GTYRAC 2 cut(s) 175, 418
HinfI GANTC 4 cut(s) 21, 37, 69, 370
HphI GGTGA 7 cut(s) 64, 172, 221, 235, 317, 332, 464
Hpy166II GTNNAC 3 cut(s) 175, 268, 418
Hpy8I GTNNAC 3 cut(s) 175, 268, 418
HpyAV CCTTC 7 cut(s) 151, 179, 232, 254, 394, 422, 475
HpyCH4III ACNGT 2 cut(s) 357, 508
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 5 cut(s) 81, 117, 185, 410, 428
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 188, 307, 431
LpnPI CCDG 6 cut(s) 192, 232, 259, 378, 381, 435
LweI GCATC 1 cut(s) 484
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 4 cut(s) 70, 241, 357, 484
MalI GATC 3 cut(s) 190, 309, 433
MboI GATC 3 cut(s) 188, 307, 431
MboII GAAGA 2 cut(s) 301, 523
MflI RGATCY 2 cut(s) 188, 431
MlsI TGGCCA 2 cut(s) 5, 82
MluCI AATT 3 cut(s) 107, 345, 441
MluNI TGGCCA 2 cut(s) 5, 82
MlyI GAGTC 3 cut(s) 30, 78, 364
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 316, 371
Mox20I TGGCCA 2 cut(s) 5, 82
MscI TGGCCA 2 cut(s) 5, 82
Msp20I TGGCCA 2 cut(s) 5, 82
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 113
NdeII GATC 3 cut(s) 188, 307, 431
NlaIII CATG 5 cut(s) 81, 117, 185, 410, 428
NmuCI GTSAC 4 cut(s) 70, 241, 357, 484
NspI RCATGY 1 cut(s) 410
PfeI GAWTC 1 cut(s) 37
PleI GAGTC 3 cut(s) 29, 77, 364
PmaCI CACGTG 1 cut(s) 489
PmlI CACGTG 1 cut(s) 489
PpsI GAGTC 3 cut(s) 29, 77, 364
Ppu21I YACGTR 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 245
PspCI CACGTG 1 cut(s) 489
PspEI GGTNACC 1 cut(s) 241
PspGI CCWGG 1 cut(s) 245
PspPI GGNCC 2 cut(s) 98, 336
PsuI RGATCY 2 cut(s) 188, 431
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
Sau3AI GATC 3 cut(s) 188, 307, 431
Sau96I GGNCC 2 cut(s) 98, 336
SchI GAGTC 3 cut(s) 30, 78, 364
ScrFI CCNGG 1 cut(s) 247
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 3 cut(s) 129, 296, 393
SinI GGWCC 2 cut(s) 98, 336
Sse9I AATT 3 cut(s) 107, 345, 441
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 357, 508
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 30
TasI AATT 3 cut(s) 107, 345, 441
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 2 cut(s) 130, 505
TseFI GTSAC 4 cut(s) 70, 241, 357, 484
Tsp45I GTSAC 4 cut(s) 70, 241, 357, 484
TspDTI ATGAA 4 cut(s) 198, 251, 441, 494
TspRI CASTG 2 cut(s) 130, 505
VpaK11BI GGWCC 2 cut(s) 98, 336
XapI RAATTY 2 cut(s) 107, 345
XceI RCATGY 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.