RchiOBHm_Chr7g0204821

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012319
Physical Location & Seq
Reverse (-)
22521257 .. 22523819
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18334

Sequence Viewer

Length: 465 bp
ATGACCATGTTTCAATTTTTATTGACAAAGCCAGTTAAGCAATCCCTCTACATCTCAGCATCTCTAATACTAGTAATTGTAGTCCCTCTGTATCTCTCCCTCAATTCCACAGCACCAGCACCAAAAGAAACCAGTTCCTCTGGGTCTGAAGAAAAAAGTCAAGAAACCCCAATGGCCACCAACACATTTGGAGTCAAGGTTGAAAAGAATCCAACTCAATCCCAACTGACTGAGCTTGGAGTCACCACATGGCCAAAGTGGGAGTGTGGTCCAAGCAAATTCCCATGGAGTTTCACTGCTACAGAGACTATGTATCTGCTAAAGGGGAAGGTGAATGTACAAGTTGACGGACATGAAGGATCTTTTGAGATTGGGGCCGGTGATTTGGTTGTGTTCCCTAAAGGAATGAAGGTCACCTGGGATGTCATTGAAGGCGTGAACAAGCATTATAGCTTGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

6.12

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 77 - 150 7.9e-26 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 2 cut(s) 174, 251
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 3 cut(s) 14, 203, 431
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 2 cut(s) 235, 453
AluI AGCT 2 cut(s) 235, 453
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 1 cut(s) 367
AoxI GGCC 3 cut(s) 174, 251, 375
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 269, 375
AsuHPI GGTGA 4 cut(s) 235, 343, 392, 406
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 2 cut(s) 176, 253
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 269, 375
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 284, 417
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 32, 132
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 284, 417
BseGI GGATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 69, 222
BseNI ACTGG 2 cut(s) 32, 132
BshFI GGCC 3 cut(s) 176, 253, 377
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 3 cut(s) 176, 253, 377
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 284
BspANI GGCC 3 cut(s) 176, 253, 377
BspCNI CTCAG 2 cut(s) 68, 223
BspLI GGNNCC 1 cut(s) 376
BspPI GGATC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 2 cut(s) 32, 132
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 284, 417
BssMI GATC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 55, 231
BstDSI CCRYGG 1 cut(s) 284
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 3 cut(s) 176, 253, 377
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 269, 375
Csp6I GTAC 1 cut(s) 338
CviAII CATG 4 cut(s) 7, 249, 285, 353
CviJI RGCY 6 cut(s) 31, 176, 235, 253, 377, 453
CviKI_1 RGCY 6 cut(s) 31, 176, 235, 253, 377, 453
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 55, 231
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
EaeI YGGCCR 2 cut(s) 174, 251
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 4 cut(s) 10, 252, 288, 356
FaiI YATR 6 cut(s) 8, 250, 286, 311, 354, 450
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 6, 248, 284, 352
FokI GGATG 1 cut(s) 434
FspBI CTAG 1 cut(s) 71
HaeIII GGCC 3 cut(s) 176, 253, 377
HapII CCGG 1 cut(s) 378
Hin1II CATG 4 cut(s) 10, 252, 288, 356
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 3 cut(s) 192, 208, 240
HpaII CCGG 1 cut(s) 378
HphI GGTGA 4 cut(s) 235, 343, 392, 406
Hpy166II GTNNAC 2 cut(s) 346, 439
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 346, 439
HpyAV CCTTC 4 cut(s) 322, 350, 403, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 55, 231
Hsp92II CATG 4 cut(s) 10, 252, 288, 356
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 7 cut(s) 45, 126, 129, 145, 391, 403, 430
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 241, 412
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 359
MlsI TGGCCA 2 cut(s) 176, 253
MluCI AATT 4 cut(s) 14, 75, 103, 278
MluNI TGGCCA 2 cut(s) 176, 253
MlyI GAGTC 2 cut(s) 201, 249
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 56, 96, 110, 148
Mox20I TGGCCA 2 cut(s) 176, 253
MscI TGGCCA 2 cut(s) 176, 253
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 2 cut(s) 176, 253
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 284
NdeII GATC 1 cut(s) 359
NlaIII CATG 4 cut(s) 10, 252, 288, 356
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 2 cut(s) 241, 412
PfeI GAWTC 1 cut(s) 208
PleI GAGTC 2 cut(s) 200, 248
PpsI GAGTC 2 cut(s) 200, 248
Psp6I CCWGG 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 2 cut(s) 269, 375
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 2 cut(s) 269, 375
SchI GAGTC 2 cut(s) 201, 249
ScrFI CCNGG 1 cut(s) 418
SetI ASST 6 cut(s) 201, 237, 333, 414, 419, 455
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 4 cut(s) 14, 75, 103, 278
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 284
TasI AATT 4 cut(s) 14, 75, 103, 278
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 241, 412
Tsp45I GTSAC 2 cut(s) 241, 412
TspDTI ATGAA 2 cut(s) 369, 422
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 278
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.