Rh7CG229700

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012319
Physical Location & Seq
Reverse (-)
21481707 .. 21484583
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG229700.1

Sequence Viewer

Length: 534 bp
ATGAAAAAGATTTCGACTATGTCCCCCAGTTCCCAGTTCCCAGAAAGAGCAGTTGCCATCGGTGAGGTGATGACCATGTTTCAATTTTTGTTGACAAAGCCAGTTAAGCAATCCCTCTACATCTCAGCATCTCTAATACTAGTAATTGTAGTCCCTCTGTATCTCTCCCTCAATTCCACAGCACCAGCACCAAAAGAAACCAGTTCCTCCGGGTCTGAAGAAAAAAGTCAAGAAACCCCAATGGCCACCAACACATTTGGAGTCAAGGTTGAAAAGAATCCAACTCAATCCCAACTGACTGAGCTTGGAGTCACCACATGGCCAAAGTGGGAGTGTGGTCCAAGCAAATTCCCATGGAGTTTCACTGCTACAGAGACTATGTATCTGCTAAAGGGGAAGGTGAATGTACAAGTTGACGGGCATGAAGGATCTTTTGAGATTGGGGCCGGTGATTTGGTTGTGTTCCCTAAAGGAATGAAGGTCACCTGGGATGTCATTGAAGGCGTGAACAAGCATTATAGCTTGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

177

Amino Acids

19.47

Weight (kDa)

6.74

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 100 - 173 1.1e-25 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10280
fragaria_vesca FvH4_5g20000
malus_domestica MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica Prupe.5G060300_v2.0.a1
pyrus_communis pycom04g04400
rosa_chinensis RchiOBHm_Chr7g0204821
rosa_laevigata RLG00000003430 RLG00000017011
rosa_multiflora Rmu_co8494705.1_g000001
rosa_roxburghii Rroxscaffold_3G00252740
rosa_rugosa Rorug07G0086000
rosa_samantha Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana Rw7G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 2 cut(s) 243, 320
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 408
AgsI TTSAA 3 cut(s) 83, 272, 500
AhlI ACTAGT 1 cut(s) 139
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 2 cut(s) 304, 522
AluI AGCT 2 cut(s) 304, 522
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 1 cut(s) 436
AoxI GGCC 3 cut(s) 243, 320, 444
ApoI RAATTY 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 338, 444
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 6 cut(s) 74, 79, 304, 412, 461, 475
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 2 cut(s) 245, 322
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 487
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 368
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 211, 487
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 338, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 2 cut(s) 211, 487
BmrI ACTGGG 2 cut(s) 21, 28
BmsI GCATC 1 cut(s) 137
BmuI ACTGGG 2 cut(s) 21, 28
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 353, 486
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 4 cut(s) 27, 34, 101, 201
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 353, 486
BseGI GGATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 138, 291
BseNI ACTGG 4 cut(s) 27, 34, 101, 201
BshFI GGCC 3 cut(s) 245, 322, 446
BsiSI CCGG 2 cut(s) 210, 447
BslFI GGGAC 2 cut(s) 7, 137
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 2 cut(s) 7, 137
BsnI GGCC 3 cut(s) 245, 322, 446
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 1 cut(s) 428
Bsp19I CCATGG 1 cut(s) 353
BspANI GGCC 3 cut(s) 245, 322, 446
BspCNI CTCAG 2 cut(s) 137, 292
BspLI GGNNCC 1 cut(s) 445
BspPI GGATC 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 4 cut(s) 27, 34, 101, 201
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 353, 486
BssMI GATC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 124, 300
BstDSI CCRYGG 1 cut(s) 353
BstEII GGTNACC 1 cut(s) 481
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 487
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 209, 485
BstSFI CTRYAG 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 3 cut(s) 245, 322, 446
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 338, 444
Csp6I GTAC 1 cut(s) 407
CviAII CATG 4 cut(s) 76, 318, 354, 422
CviJI RGCY 6 cut(s) 100, 245, 304, 322, 446, 522
CviKI_1 RGCY 6 cut(s) 100, 245, 304, 322, 446, 522
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 124, 300
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
EaeI YGGCCR 2 cut(s) 243, 320
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 481
EcoO65I GGTNACC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 4 cut(s) 79, 321, 357, 425
FaiI YATR 7 cut(s) 20, 77, 319, 355, 380, 423, 519
FaqI GGGAC 2 cut(s) 7, 137
FatI CATG 4 cut(s) 75, 317, 353, 421
FokI GGATG 1 cut(s) 503
FspBI CTAG 1 cut(s) 140
HaeIII GGCC 3 cut(s) 245, 322, 446
HapII CCGG 2 cut(s) 210, 447
Hin1II CATG 4 cut(s) 79, 321, 357, 425
HincII GTYRAC 2 cut(s) 93, 415
HindII GTYRAC 2 cut(s) 93, 415
HinfI GANTC 3 cut(s) 261, 277, 309
HpaII CCGG 2 cut(s) 210, 447
HphI GGTGA 6 cut(s) 74, 79, 304, 412, 461, 475
Hpy166II GTNNAC 3 cut(s) 93, 415, 508
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 3 cut(s) 93, 415, 508
HpyAV CCTTC 4 cut(s) 391, 419, 472, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 124, 300
Hsp92II CATG 4 cut(s) 79, 321, 357, 425
Kzo9I GATC 1 cut(s) 428
LweI GCATC 1 cut(s) 137
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 310, 481
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 1 cut(s) 230
MflI RGATCY 1 cut(s) 428
MlsI TGGCCA 2 cut(s) 245, 322
MluCI AATT 4 cut(s) 83, 144, 172, 347
MluNI TGGCCA 2 cut(s) 245, 322
MlyI GAGTC 2 cut(s) 270, 318
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 5 cut(s) 58, 125, 165, 179, 217
Mox20I TGGCCA 2 cut(s) 245, 322
MscI TGGCCA 2 cut(s) 245, 322
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 245, 322
MspI CCGG 2 cut(s) 210, 447
MspR9I CCNGG 2 cut(s) 211, 487
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 353
NdeII GATC 1 cut(s) 428
NlaIII CATG 4 cut(s) 79, 321, 357, 425
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 2 cut(s) 310, 481
PfeI GAWTC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 19
PleI GAGTC 2 cut(s) 269, 317
PpsI GAGTC 2 cut(s) 269, 317
Psp6I CCWGG 1 cut(s) 485
PspEI GGTNACC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 338, 444
PsuI RGATCY 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 1 cut(s) 428
Sau96I GGNCC 2 cut(s) 338, 444
SchI GAGTC 2 cut(s) 270, 318
ScrFI CCNGG 2 cut(s) 211, 487
SetI ASST 7 cut(s) 69, 270, 306, 402, 483, 488, 524
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 338
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 4 cut(s) 83, 144, 172, 347
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 209, 485
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 83, 144, 172, 347
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 310, 481
Tsp45I GTSAC 2 cut(s) 310, 481
TspDTI ATGAA 3 cut(s) 17, 438, 491
TspRI CASTG 1 cut(s) 370
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 347
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.