Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012319

Physical Location & Seq

Genomic Coordinates Forward (+)

6506849 .. 6508996

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTTCAAGTTTTATCAAAGCAATTCTTAGTGCTGCCTTTAATACTAGTAGTAATTGTAGTCCCTCTCTACATCTCATTCAATTTTAGAGAACCCAAACCAGCAGAAATCAGTTCTTCTCAGTCTGAAGAAACCCCAATGGCCACCAACGCTTTTGGTGTGAAGGTTGAAAATAATCCAGCTCAATCCAAACTCACCGAGCTTGGAGTCACAGCATGGCCCAAGTGGTCATGTGGTCCAAGCAAATTCCCATGGTCATTCACTGCCACAGAGACTATGTATCTGTTGGAGGGCAAAGTGATTGTCCAAGTAGATGGGCATGAAGGATCTTTCACAATTGGGGCTGGAGATTTGGCTGTGTTCCCAAAAGGCATGAAGGTCACTTGGGATGTCCTTGAAGCTGTAAACAAGCATTATAGCTTGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

144

Amino Acids

15.84

Weight (kDa)

5.67

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10280
fragaria_vesca	FvH4_5g20000
malus_domestica	MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica	Prupe.5G060300_v2.0.a1
pyrus_communis	pycom04g04400
rosa_chinensis	RchiOBHm_Chr7g0204821
rosa_laevigata	RLG00000003430 RLG00000017011
rosa_multiflora	Rmu_co8494705.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252740
rosa_rugosa	Rorug07G0086000
rosa_samantha	Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana	Rw7G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	147
AgsI	TTSAA	4 cut(s)	8, 82, 170, 398
AhlI	ACTAGT	1 cut(s)	46
AluBI	AGCT	4 cut(s)	182, 202, 401, 420
AluI	AGCT	4 cut(s)	182, 202, 401, 420
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	141, 218
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspS9I	GGNCC	2 cut(s)	219, 236
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	219, 236
BpmI	CTGGAG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	2 cut(s)	143, 220
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	143, 220
Bsp143I	GATC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	251
BspANI	GGCC	2 cut(s)	143, 220
BspCNI	CTCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	28, 120
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	143, 220
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	219, 236
CviAII	CATG	5 cut(s)	216, 231, 252, 320, 373
CviJI	RGCY	8 cut(s)	143, 182, 202, 220, 344, 356, 401, 420
CviKI_1	RGCY	8 cut(s)	143, 182, 202, 220, 344, 356, 401, 420
DdeI	CTNAG	2 cut(s)	28, 120
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	5 cut(s)	219, 234, 255, 323, 376
FaiI	YATR	7 cut(s)	217, 232, 253, 278, 321, 374, 417
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	215, 230, 251, 319, 372
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	143, 220
Hin1II	CATG	5 cut(s)	219, 234, 255, 323, 376
HinfI	GANTC	1 cut(s)	207
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	157, 317, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	28, 120
Hsp92II	CATG	5 cut(s)	219, 234, 255, 323, 376
Kzo9I	GATC	1 cut(s)	326
LpnPI	CCDG	3 cut(s)	114, 192, 330
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	208, 379
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	2 cut(s)	108, 140
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	5 cut(s)	23, 54, 82, 245, 336
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	75, 283
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	5 cut(s)	219, 234, 255, 323, 376
NmuCI	GTSAC	2 cut(s)	208, 379
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	219, 236
PsuI	RGATCY	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	2 cut(s)	219, 236
SchI	GAGTC	1 cut(s)	216
SetI	ASST	6 cut(s)	168, 184, 204, 381, 403, 422
SinI	GGWCC	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	5 cut(s)	23, 54, 82, 245, 336
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	251
TasI	AATT	5 cut(s)	23, 54, 82, 245, 336
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	208, 379
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	208, 379
TspDTI	ATGAA	2 cut(s)	336, 389
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.