Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012319

Physical Location & Seq

Genomic Coordinates Reverse (-)

3977695 .. 3980076

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCGATTGGGGAGTCGATGTTTGAATTGAAATCAAAGCAGTCGCTAATAATACTTCCTCTAATACTTGCAGTTGCAGTTTCTCTGTATCTCACCGTCAATTTTACACAATCCAGACCAAAAGCAATCAGTCTATCTGGGTCTGAAGAAGGATCTGCCATGGCCGCCAACGAATTTGGTGTAACAGTTGAAAAGAATCCTACTCAGTCCAAGCTCACTGAGCTAGGAGTCGCAACTTGGCCCAAGTGGAGTTGTGGTCCAAGCAAATTTCCGTGGTCATTCAGTGCCACAGAGACCATGTATCTGCTGGAGGGAAAAGTGAACGTTGAAGTTGATGGGAAAGAAGGATCGTTCACAATCGGGGCCGGTGATTTTGTTGTGTTCCCTAAAGGAATGAAGGTCACTTGGGATGTCATTGAAGCTGTGAACAAGCATTATAGCTTGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

5.1

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10280
fragaria_vesca	FvH4_5g20000
malus_domestica	MD04G1050000.v1.1 MD06G1049900.v1.1
prunus_persica	Prupe.5G060300_v2.0.a1
pyrus_communis	pycom04g04400
rosa_chinensis	RchiOBHm_Chr7g0204821
rosa_laevigata	RLG00000003430 RLG00000017011
rosa_multiflora	Rmu_co8494705.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252740
rosa_rugosa	Rorug07G0086000
rosa_samantha	Rh2CG328500 Rh4DG119500 Rh7AG216300 Rh7BG213500 Rh7CG229700 Rh7DG223900
rosa_wichuraiana	Rw7G018750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclI	AACGTT	1 cut(s)	324
AclWI	GGATC	2 cut(s)	160, 355
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	173, 266
AcuI	CTGAAG	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	26, 31, 191, 329, 419
AluBI	AGCT	4 cut(s)	214, 223, 422, 441
AluI	AGCT	4 cut(s)	214, 223, 422, 441
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	160, 355
AoxI	GGCC	3 cut(s)	162, 239, 363
ApoI	RAATTY	2 cut(s)	173, 266
AspS9I	GGNCC	3 cut(s)	240, 257, 363
AsuHPI	GGTGA	2 cut(s)	85, 380
AvaII	GGWCC	1 cut(s)	257
BccI	CCATC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	240, 257, 363
BmiI	GGNNCC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	159, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 241, 271
Bse118I	RCCGGY	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	159, 272
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	210, 218
BshFI	GGCC	3 cut(s)	164, 241, 365
BsiSI	CCGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	164, 241, 365
Bso31I	GGTCTC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	152, 347
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	164, 241, 365
BspCNI	CTCAG	2 cut(s)	211, 217
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	160, 355
BspTNI	GGTCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	159, 272
BssMI	GATC	2 cut(s)	152, 347
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	97, 187
Bst6I	CTCTTC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	204, 219
BstDSI	CCRYGG	2 cut(s)	159, 272
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	155, 350
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	152, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 220
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	164, 241, 365
BtgI	CCRYGG	2 cut(s)	159, 272
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	216, 289
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	240, 257, 363
CviAII	CATG	2 cut(s)	160, 298
CviJI	RGCY	7 cut(s)	164, 214, 223, 241, 365, 422, 441
CviKI_1	RGCY	7 cut(s)	164, 214, 223, 241, 365, 422, 441
DdeI	CTNAG	2 cut(s)	204, 219
DpnI	GATC	2 cut(s)	154, 349
DpnII	GATC	2 cut(s)	152, 347
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	163, 301
FaiI	YATR	3 cut(s)	161, 299, 438
FatI	CATG	2 cut(s)	159, 297
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	164, 241, 365
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	163, 301
HinfI	GANTC	3 cut(s)	14, 196, 228
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	85, 380
Hpy166II	GTNNAC	3 cut(s)	322, 354, 427
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	3 cut(s)	322, 354, 427
HpyAV	CCTTC	3 cut(s)	143, 338, 391
HpyCH4III	ACNGT	2 cut(s)	97, 187
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	71, 77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 220
HpyF3I	CTNAG	2 cut(s)	204, 219
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	163, 301
Kzo9I	GATC	2 cut(s)	152, 347
LpnPI	CCDG	4 cut(s)	123, 127, 293, 379
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	181, 400
MalI	GATC	2 cut(s)	154, 349
MboI	GATC	2 cut(s)	152, 347
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	4 cut(s)	26, 100, 173, 266
MlyI	GAGTC	2 cut(s)	23, 237
MnlI	CCTC	2 cut(s)	69, 304
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	164, 220
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	152, 347
NlaIII	CATG	2 cut(s)	163, 301
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	22, 236
PpsI	GAGTC	2 cut(s)	22, 236
Psp1406I	AACGTT	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	240, 257, 363
PsuI	RGATCY	1 cut(s)	152
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	152, 347
Sau96I	GGNCC	3 cut(s)	240, 257, 363
SchI	GAGTC	2 cut(s)	23, 237
SetI	ASST	6 cut(s)	216, 225, 327, 402, 424, 443
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	4 cut(s)	26, 100, 173, 266
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	97, 187
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	17
TasI	AATT	4 cut(s)	26, 100, 173, 266
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	2 cut(s)	223, 289
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	223, 289
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	173, 266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.