FvH4_5g21410

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003532
Physical Location & Seq
Reverse (-)
12895452 .. 12897539
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21410.t2

Sequence Viewer

Length: 210 bp
ATGGACGCCATAGACTCAGTCGTGGATCCCCTCAGAGAGTTCTCCAAGGACTCCATTCGTCTCGTCAAGCGCTGCCACAAGCCCGATCGCAAAGAATTCTCCAAGGTGGCTCTCCGGACCGCGATTGGATTCGTCGTCATGGGATTCGTCGGCTTCTTCGTCAAGCTCATCTTCATTCCTATCAACAACATCATCGTCGGATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

70

Amino Acids

7.78

Weight (kDa)

9.74

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 4.1e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 1 cut(s) 120
AclWI GGATC 3 cut(s) 20, 33, 208
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 6
AfeI AGCGCT 1 cut(s) 71
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 3 cut(s) 20, 33, 208
Aor13HI TCCGGA 1 cut(s) 114
Aor51HI AGCGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 117
AvaII GGWCC 1 cut(s) 117
BamHI GGATCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 45, 102
BsaWI WCCGGW 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 45, 102
BseMII CTCAG 2 cut(s) 30, 46
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 25, 85, 200
BspACI CCGC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 29, 45
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 3 cut(s) 20, 33, 208
BssECI CCNNGG 2 cut(s) 45, 102
BssMI GATC 3 cut(s) 25, 85, 200
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 45, 102
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 16, 32
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 28, 88, 203
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 25, 85, 200
BstMCI CGRYCG 1 cut(s) 88
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 25, 200
BstYI RGATCY 2 cut(s) 25, 200
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 117
CpoI CGGWCCG 1 cut(s) 117
CseI GACGC 1 cut(s) 14
CspI CGGWCCG 1 cut(s) 117
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 82, 110, 153, 166
CviKI_1 RGCY 4 cut(s) 82, 110, 153, 166
DdeI CTNAG 2 cut(s) 16, 32
DpnI GATC 3 cut(s) 27, 87, 202
DpnII GATC 3 cut(s) 25, 85, 200
Eco130I CCWWGG 2 cut(s) 45, 102
Eco47I GGWCC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 45, 102
ErhI CCWWGG 2 cut(s) 45, 102
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 11, 140
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 73
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 4 cut(s) 14, 50, 129, 144
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 35, 200
Hpy188III TCNNGA 1 cut(s) 115
Hpy99I CGWCG 3 cut(s) 137, 152, 200
HpyF3I CTNAG 2 cut(s) 16, 32
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 25, 85, 200
LpnPI CCDG 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 59
MalI GATC 3 cut(s) 27, 87, 202
MboI GATC 3 cut(s) 25, 85, 200
MboII GAAGA 2 cut(s) 148, 163
MflI RGATCY 2 cut(s) 25, 200
MluCI AATT 1 cut(s) 95
MlyI GAGTC 2 cut(s) 8, 44
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 41
MroI TCCGGA 1 cut(s) 114
MspI CCGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 122
NdeII GATC 3 cut(s) 25, 85, 200
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 2 cut(s) 129, 144
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 74
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 2 cut(s) 8, 44
PpsI GAGTC 2 cut(s) 8, 44
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 2 cut(s) 25, 200
PsyI GACNNNGTC 1 cut(s) 17
PvuI CGATCG 1 cut(s) 88
Rsr2I CGGWCCG 1 cut(s) 117
RsrII CGGWCCG 1 cut(s) 117
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 3 cut(s) 25, 85, 200
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 8, 44
SetI ASST 2 cut(s) 108, 168
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 120
StyI CCWWGG 2 cut(s) 45, 102
TasI AATT 1 cut(s) 95
TfiI GAWTC 2 cut(s) 129, 144
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.