Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041896.1

Orthogroup ID

OG0003532

Physical Location & Seq

Genomic Coordinates Reverse (-)

465 .. 961

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgagcaaccgtagcctggagatatgtgggcctagaacaacccaaacaattgagcctcactccaaaataaccttcaaaagaaagaaagaaagagaaaatcctccttatattgaccagtgtcctaacgcgtctaaaccactccgtcttcttctatacattctcagatcttctctcaattccctcacacagaagatggacgccatagactcagtcgtggatcccctcagagagttctccaaggactccatccgactcgtcaagcgctgccacaagcccgatcgcaaagaattctccaaggtggcgctccggaccgcgattggattcgtggtgatgggattcgttgggttcttcgtcaagctgatcttcattcccatcaacaacatcatcgtcggatctgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

SecE

Protein Analysis

133

Amino Acids

15.2

Weight (kDa)

10.02

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24920 AT5G50460
fragaria_vesca	FvH4_5g08390 FvH4_5g21410 FvH4_5g21410
malus_domestica	MD06G1028800.v1.1 MD16G1278200.v1.1
prunus_persica	Prupe.5G043000_v2.0.a1
pyrus_communis	pycom16g24850
rosa_chinensis	RchiOBHm_Chr2g0175721 RchiOBHm_Chr7g0190061 RchiOBHm_Chr7g0208811
rosa_multiflora	Rmu_co8387321.1_g000001 Rmu_sc0000998.1_g000013 Rmu_sc0004886.1_g000007 Rmu_sc0041896.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077120 Rroxscaffold_3G00250250
rosa_rugosa	Rorug06G0502100 Rorug07G0105900
rosa_samantha	Rh2AG666100 Rh2BG677300 Rh2CG640600 Rh2DG691200 Rh7AG107600 Rh7AG241100 Rh7BG109900 Rh7BG236000 Rh7CG112200 Rh7CG255700 Rh7DG110600 Rh7DG247100
rosa_wichuraiana	Rw2G054620 Rw7G009290 Rw7G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	128, 314
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	212, 225, 400
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	198
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AlwI	GGATC	3 cut(s)	212, 225, 400
Aor13HI	TCCGGA	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	264, 304
AspS9I	GGNCC	2 cut(s)	29, 309
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	4 cut(s)	187, 254, 325, 380
BciT130I	CCWGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	2 cut(s)	265, 305
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	29, 309
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	237, 294
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	237, 294
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	175, 222, 238
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	251
Bsh1236I	CGCG	2 cut(s)	128, 314
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	31
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	164, 217, 277, 360, 392
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	174, 221, 237
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	128, 314
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	212, 225, 400
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	237, 294
BssMI	GATC	5 cut(s)	164, 217, 277, 360, 392
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	237, 294
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	161, 208, 224
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	2 cut(s)	128, 314
BstH2I	RGCGCY	2 cut(s)	265, 305
BstHHI	GCGC	2 cut(s)	264, 304
BstKTI	GATC	5 cut(s)	167, 220, 280, 363, 395
BstMBI	GATC	5 cut(s)	164, 217, 277, 360, 392
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	17
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	2 cut(s)	128, 314
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	3 cut(s)	164, 217, 392
BstYI	RGATCY	3 cut(s)	164, 217, 392
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	122
CfoI	GCGC	2 cut(s)	264, 304
Cfr13I	GGNCC	2 cut(s)	29, 309
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	2 cut(s)	117, 206
CspI	CGGWCCG	1 cut(s)	309
CviJI	RGCY	5 cut(s)	15, 31, 55, 274, 358
CviKI_1	RGCY	5 cut(s)	15, 31, 55, 274, 358
DdeI	CTNAG	3 cut(s)	161, 208, 224
DpnI	GATC	5 cut(s)	166, 219, 279, 362, 394
DpnII	GATC	5 cut(s)	164, 217, 277, 360, 392
Eco130I	CCWWGG	2 cut(s)	237, 294
Eco47I	GGWCC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	237, 294
ErhI	CCWWGG	2 cut(s)	237, 294
FaiI	YATR	4 cut(s)	25, 108, 154, 203
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	263, 303
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	2 cut(s)	265, 305
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	2 cut(s)	117, 206
HhaI	GCGC	2 cut(s)	264, 304
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	2 cut(s)	262, 302
HinP1I	GCGC	2 cut(s)	262, 302
HinfI	GANTC	5 cut(s)	206, 242, 252, 321, 336
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	164, 227, 251, 392
Hpy188III	TCNNGA	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	3 cut(s)	161, 208, 224
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	2 cut(s)	262, 302
Kpn2I	TCCGGA	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	164, 217, 277, 360, 392
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	4 cut(s)	2, 29, 128, 320
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	33
MalI	GATC	5 cut(s)	166, 219, 279, 362, 394
MboI	GATC	5 cut(s)	164, 217, 277, 360, 392
MboII	GAAGA	6 cut(s)	137, 140, 159, 202, 340, 355
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	3 cut(s)	164, 217, 392
MluCI	AATT	3 cut(s)	48, 175, 287
MluI	ACGCGT	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	200, 236, 246
MmeI	TCCRAC	2 cut(s)	274, 370
MnlI	CCTC	4 cut(s)	66, 111, 191, 233
MroI	TCCGGA	1 cut(s)	306
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	2 cut(s)	128, 314
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	5 cut(s)	164, 217, 277, 360, 392
NlaIV	GGNNCC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	321, 336
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	266
Ple19I	CGATCG	1 cut(s)	280
PleI	GAGTC	3 cut(s)	200, 236, 246
PpsI	GAGTC	3 cut(s)	200, 236, 246
PshAI	GACNNNNGTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	29, 309
PsuI	RGATCY	3 cut(s)	164, 217, 392
PsyI	GACNNNGTC	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	280
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	5 cut(s)	164, 217, 277, 360, 392
Sau96I	GGNCC	2 cut(s)	29, 309
SchI	GAGTC	3 cut(s)	200, 236, 246
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	3 cut(s)	74, 300, 360
SinI	GGWCC	1 cut(s)	309
Sse9I	AATT	3 cut(s)	48, 175, 287
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	237, 294
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	3 cut(s)	48, 175, 287
TfiI	GAWTC	2 cut(s)	321, 336
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.