MD06G1028800.v1.1

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003532
Physical Location & Seq
Reverse (-)
3428684 .. 3430342
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1028800.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGACGCCATCGACTCAGTGGTGGATCCGCTCCGAGAGTTCTCCAAGGACAGCATTCGCCTCGTCAAGCGCTGCCACAAGCCCGATCGCAAAGAATTCTCCAAGGTCGCGCTCCGGACAGCGATCGGGTTCGTCGTGATGGGTTTCGTCGGGTTCTTCGTCAAGCTGATCTTCATCCCCATCAACAATATCATCGTCGGATCTGTCATGCTGAAGATCAAGTTAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

78

Amino Acids

8.78

Weight (kDa)

10.01

Isoelectric Point (pI)

20.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 5.8e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AccII CGCG 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 1 cut(s) 29
AclWI GGATC 3 cut(s) 20, 33, 208
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 6
AfeI AGCGCT 1 cut(s) 71
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 3 cut(s) 20, 33, 208
Aor13HI TCCGGA 1 cut(s) 114
Aor51HI AGCGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 2 cut(s) 72, 112
BamHI GGATCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 17, 133, 188
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 45, 102
BsaWI WCCGGW 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 45, 102
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 173
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 2 cut(s) 88, 126
BsiEI CGRYCG 2 cut(s) 88, 126
BsiSI CCGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 6 cut(s) 25, 85, 123, 168, 200, 216
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 29
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 3 cut(s) 20, 33, 208
BsrBI CCGCTC 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 45, 102
BssMI GATC 6 cut(s) 25, 85, 123, 168, 200, 216
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 45, 102
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 112
BstKTI GATC 6 cut(s) 28, 88, 126, 171, 203, 219
BstMBI GATC 6 cut(s) 25, 85, 123, 168, 200, 216
BstMCI CGRYCG 2 cut(s) 88, 126
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 25, 200
BstYI RGATCY 2 cut(s) 25, 200
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 24
CfoI GCGC 2 cut(s) 72, 112
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 208
CviJI RGCY 2 cut(s) 82, 166
CviKI_1 RGCY 2 cut(s) 82, 166
DdeI CTNAG 1 cut(s) 16
DpnI GATC 6 cut(s) 27, 87, 125, 170, 202, 218
DpnII GATC 6 cut(s) 25, 85, 123, 168, 200, 216
Eco130I CCWWGG 2 cut(s) 45, 102
Eco47III AGCGCT 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 45, 102
ErhI CCWWGG 2 cut(s) 45, 102
FaeI CATG 1 cut(s) 211
FaiI YATR 1 cut(s) 209
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 73
GlaI GCGC 2 cut(s) 71, 111
GluI GCNGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 73
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 72, 112
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 2 cut(s) 70, 110
HinP1I GCGC 2 cut(s) 70, 110
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 35, 200
Hpy188III TCNNGA 2 cut(s) 115, 136
Hpy99I CGWCG 3 cut(s) 137, 152, 200
HpyF3I CTNAG 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 2 cut(s) 70, 110
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 6 cut(s) 25, 85, 123, 168, 200, 216
LmnI GCTCC 2 cut(s) 36, 117
LpnPI CCDG 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 59
MalI GATC 6 cut(s) 27, 87, 125, 170, 202, 218
MbiI CCGCTC 1 cut(s) 31
MboI GATC 6 cut(s) 25, 85, 123, 168, 200, 216
MboII GAAGA 3 cut(s) 148, 163, 226
MflI RGATCY 2 cut(s) 25, 200
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 71
MroI TCCGGA 1 cut(s) 114
MspI CCGG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 54
MvnI CGCG 1 cut(s) 110
NdeII GATC 6 cut(s) 25, 85, 123, 168, 200, 216
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 156
PctI GAATGC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 74
Ple19I CGATCG 2 cut(s) 88, 126
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 2 cut(s) 25, 200
PvuI CGATCG 2 cut(s) 88, 126
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 6 cut(s) 25, 85, 123, 168, 200, 216
SchI GAGTC 1 cut(s) 8
SetI ASST 2 cut(s) 108, 168
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 29
StyI CCWWGG 2 cut(s) 45, 102
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 95
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.