RchiOBHm_Chr2g0175721

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003532
Physical Location & Seq
Reverse (-)
87773185 .. 87774183
999 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54277

Sequence Viewer

Length: 210 bp
ATGGACGCCATAGATTCAGTGTTTGAGCCTCTGAGAGAATTCTCCAAGGACAGCGTTCGCCTGGTTAAACGCTGCCACAAACCCGACCGGAAAGAATTCACAAAGGTGGCGGTACGGACGGCCATCGGGTTCGTGGTGATGGGATTCGTTGGCTTCTTTGTGAAGCTCATCTTCATTCCGATCAACAACATCATCGTCGGAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

69

Amino Acids

7.79

Weight (kDa)

9.74

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 1.1e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 38, 95
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 114
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 166, 203
AluI AGCT 2 cut(s) 166, 203
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 72, 203
ApoI RAATTY 2 cut(s) 38, 95
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 2 cut(s) 59, 190
BccI CCATC 2 cut(s) 131, 133
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 2 cut(s) 73, 204
BlsI GCNGC 2 cut(s) 74, 205
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 87
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 59, 190
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 32, 207
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 59, 190
BsuRI GGCC 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 24
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 5 cut(s) 28, 122, 153, 166, 203
CviKI_1 RGCY 5 cut(s) 28, 122, 153, 166, 203
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 32, 207
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 45
EcoRI GAATTC 2 cut(s) 38, 95
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 155, 187
Fnu4HI GCNGC 2 cut(s) 73, 204
Fsp4HI GCNGC 2 cut(s) 73, 204
GluI GCNGC 2 cut(s) 73, 204
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
HinfI GANTC 2 cut(s) 14, 144
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 33, 180, 200
Hpy99I CGWCG 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 32, 207
Hsp92I GRCGYC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 3 cut(s) 47, 74, 101
Lsp1109I GCAGC 2 cut(s) 59, 190
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 163
MluCI AATT 2 cut(s) 38, 95
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 180
OliI CACNNNNGTG 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 14, 144
PkrI GCNGC 2 cut(s) 74, 205
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 73, 204
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 62
SetI ASST 3 cut(s) 108, 168, 205
SgeI CNNG 7 cut(s) 58, 73, 74, 95, 100, 139, 145
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 2 cut(s) 38, 95
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 45
TasI AATT 2 cut(s) 38, 95
TfiI GAWTC 2 cut(s) 14, 144
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 72, 203
TspDTI ATGAA 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 38, 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.