Rw2G054620

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003532
Physical Location & Seq
Reverse (-)
82203811 .. 82204160
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054620.1

Sequence Viewer

Length: 210 bp
ATGGACGCCATAGATTCAGTGTTTGAGCCTCTGAGAGAATTCTCCAAGGACAGCGTTCGCCTGGTTAAACGCTGCCACAAACCCGACCGGAAAGAATTCACAAAGGTGGCGGTACGTACGGCCATCGGGTTCGTGGTGATGGGATTCGTTGGCTTCTTTGTGAAGCTCATCTTCATTCCGATCAACAACATCATCGTCGGAACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

69

Amino Acids

7.82

Weight (kDa)

9.74

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 1.1e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 38, 95
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 114, 118
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 166, 206
AluI AGCT 2 cut(s) 166, 206
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 38, 95
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 1 cut(s) 59
BccI CCATC 2 cut(s) 131, 133
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 87
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 88
BsiWI CGTACG 1 cut(s) 116
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 32, 207
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSNI TACGTA 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 24
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 113, 117
CviJI RGCY 5 cut(s) 28, 122, 153, 166, 206
CviKI_1 RGCY 5 cut(s) 28, 122, 153, 166, 206
CviQI GTAC 2 cut(s) 113, 117
DdeI CTNAG 2 cut(s) 32, 207
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 120
Eco105I TACGTA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 45
EcoRI GAATTC 2 cut(s) 38, 95
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 155, 187
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
HinfI GANTC 2 cut(s) 14, 144
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 33, 180, 200
Hpy99I CGWCG 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 32, 207
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 47, 74, 101
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 1 cut(s) 115
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 163
MluCI AATT 2 cut(s) 38, 95
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 180
OliI CACNNNNGTG 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 14, 144
Pfl23II CGTACG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspLI CGTACG 1 cut(s) 116
RsaI GTAC 2 cut(s) 114, 118
RsaNI GTAC 2 cut(s) 113, 117
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 62
SetI ASST 4 cut(s) 108, 118, 168, 208
SgeI CNNG 7 cut(s) 58, 73, 74, 95, 100, 139, 145
SmiMI CAYNNNNRTG 1 cut(s) 104
SnaBI TACGTA 1 cut(s) 116
Sse9I AATT 2 cut(s) 38, 95
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 118
TasI AATT 2 cut(s) 38, 95
TfiI GAWTC 2 cut(s) 14, 144
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 38, 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.