Rorug07G0105900

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003532
Physical Location & Seq
Reverse (-)
8308053 .. 8311346
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0105900.1

Sequence Viewer

Length: 870 bp
ATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGGTTGTGGACTGTTTGGTACAGTTTTTCATGATTGATCTCTGTCGAGTTGTTGGGTTGTGCGAGTTGTTTGAAGGTACTTCTGCATGCCCAGGTGGAAAGTTCTATTGTCGAAATGTGGGTCACACTCCTCTCCAGCTATTTTCATCCAGAGTCAATGATGGTATTTGTGACTGCTGTGATGGGAGTGATGAATATGATGGTAAAGTAAATTGCCCAAATACATGTTGGGAGGCTGGGAAAGTGGCTAGAGATAAGCTGAAAAAGAAGATTGCTACTTACCAAGAGGGAGTTGCAATACGAAAACAGGAAGTTGAACAAGCAAAAGTAGCTATGGCTAAAGACGAGGCAGAACTATCAAAGCTGCAAAAGCGTAAAGAACAAATAGAAAAGGCTGAGGAGAGGGAACGGTTACAGAAAGAAAAAGAAGAGCAGGAGAAAAAAGAAGCAGAAGAGAAAGCTAAGCAGGAGAACAGTGGTGGTGAAGACCAGGAGAAAACTAAAGCTGAAGAGGAAGCTAAGAAGGAAAAGGGTGAGGATGTGGAGGATGGCAGTGCTGAAGACAAACCTATAGAAAGTCAACATGATGATAATGTTGGGAATTTGGACGATTCTCATTCATACCAGGATACAGCAGAGAAACATGATGACTTAGGTACTAAAGATGGTAGTATTGATACTCCTGAACATATAGGGTCTCTGGTTGATGGTGTACAACAGGAAGCAGTAAAGCAGAAGAAAGAGTCTGTTGCTACATCTGAACCTGACTTTGATGGCGGAAGCAAGGTGCCTCATGATGAGAACGTTAGAGTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

289

Amino Acids

32.31

Weight (kDa)

4.76

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRKCSH-like PF12999 43 - 148 4.9e-21 Glucosidase II beta subunit-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AciI CCGC 1 cut(s) 828
AclI AACGTT 1 cut(s) 855
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 2 cut(s) 579, 630
AfaI GTAC 4 cut(s) 72, 130, 709, 765
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 4 cut(s) 28, 44, 125, 368
AjnI CCWGG 3 cut(s) 142, 540, 675
AluBI AGCT 7 cut(s) 190, 310, 383, 415, 512, 557, 569
AluI AGCT 7 cut(s) 190, 310, 383, 415, 512, 557, 569
Alw26I GTCTC 1 cut(s) 753
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 652
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AsuHPI GGTGA 2 cut(s) 545, 596
BanI GGYRCC 1 cut(s) 838
BbsI GAAGAC 3 cut(s) 27, 543, 618
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 402
BccI CCATC 7 cut(s) 206, 227, 245, 593, 710, 752, 818
BciT130I CCWGG 3 cut(s) 144, 542, 677
BciVI GTATCC 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 753
BfaI CTAG 2 cut(s) 300, 868
BfmI CTRYAG 1 cut(s) 621
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 1 cut(s) 416
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 3 cut(s) 144, 542, 677
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 3 cut(s) 144, 542, 677
BpiI GAAGAC 3 cut(s) 27, 543, 618
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 753
BsaJI CCNNGG 1 cut(s) 142
BseBI CCWGG 3 cut(s) 144, 542, 677
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 3 cut(s) 197, 595, 604
BseMII CTCAG 1 cut(s) 438
BseRI GAGGAG 2 cut(s) 171, 464
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 838
BsmAI GTCTC 1 cut(s) 753
Bso31I GGTCTC 1 cut(s) 753
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 1 cut(s) 828
BspCNI CTCAG 1 cut(s) 439
BspHI TCATGA 2 cut(s) 81, 844
BspLI GGNNCC 1 cut(s) 840
BspQI GCTCTTC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 753
BsrGI TGTACA 1 cut(s) 763
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 3 cut(s) 144, 542, 677
Bst4CI ACNGT 4 cut(s) 65, 75, 462, 527
Bst6I CTCTTC 3 cut(s) 474, 498, 555
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 4 cut(s) 447, 513, 570, 703
BstF5I GGATG 3 cut(s) 197, 595, 604
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 753
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 380, 421
BstNI CCWGG 3 cut(s) 144, 542, 677
BstNSI RCATGY 2 cut(s) 141, 279
BstSCI CCNGG 3 cut(s) 142, 540, 675
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 3 cut(s) 27, 543, 618
BsuI GTATCC 1 cut(s) 673
BtsCI GGATG 3 cut(s) 197, 595, 604
BtsI GCAGTG 1 cut(s) 610
BtsIMutI CAGTG 2 cut(s) 532, 610
Cac8I GCNNGC 1 cut(s) 139
CciI TCATGA 2 cut(s) 81, 844
Csp6I GTAC 4 cut(s) 71, 129, 708, 764
CviAII CATG 7 cut(s) 14, 82, 138, 276, 635, 695, 845
CviQI GTAC 4 cut(s) 71, 129, 708, 764
DdeI CTNAG 4 cut(s) 447, 513, 570, 703
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 3 cut(s) 474, 498, 555
EarI CTCTTC 3 cut(s) 474, 498, 555
EciI GGCGGA 1 cut(s) 843
Eco31I GGTCTC 1 cut(s) 753
Eco57I CTGAAG 2 cut(s) 579, 630
EcoRII CCWGG 3 cut(s) 142, 540, 675
FaeI CATG 7 cut(s) 17, 85, 141, 279, 638, 698, 848
FatI CATG 7 cut(s) 13, 81, 137, 275, 634, 694, 844
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 3 cut(s) 184, 602, 611
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 2 cut(s) 300, 868
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 170
Hin1II CATG 7 cut(s) 17, 85, 141, 279, 638, 698, 848
HincII GTYRAC 2 cut(s) 632, 865
HindII GTYRAC 2 cut(s) 632, 865
HinfI GANTC 4 cut(s) 204, 662, 794, 861
HphI GGTGA 2 cut(s) 545, 596
Hpy166II GTNNAC 4 cut(s) 61, 632, 764, 865
Hpy188I TCNGA 1 cut(s) 811
Hpy188III TCNNGA 4 cut(s) 82, 201, 734, 845
Hpy8I GTNNAC 4 cut(s) 61, 632, 764, 865
HpyAV CCTTC 2 cut(s) 119, 568
HpyCH4III ACNGT 4 cut(s) 65, 75, 462, 527
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 4 cut(s) 13, 137, 347, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 421
HpyF3I CTNAG 4 cut(s) 447, 513, 570, 703
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 7 cut(s) 17, 85, 141, 279, 638, 698, 848
Kzo9I GATC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 402
MaeI CTAG 2 cut(s) 300, 868
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 173, 221, 462
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 8 cut(s) 32, 331, 491, 515, 548, 572, 623, 799
MluCI AATT 3 cut(s) 39, 262, 652
MlyI GAGTC 3 cut(s) 213, 803, 870
MspR9I CCNGG 3 cut(s) 144, 542, 677
MvaI CCWGG 3 cut(s) 144, 542, 677
MwoI GCNNNNNNNGC 2 cut(s) 380, 421
NdeII GATC 1 cut(s) 88
NlaIII CATG 7 cut(s) 17, 85, 141, 279, 638, 698, 848
NlaIV GGNNCC 1 cut(s) 840
NmuCI GTSAC 2 cut(s) 173, 221
NspI RCATGY 2 cut(s) 141, 279
PaeI GCATGC 1 cut(s) 141
PagI TCATGA 2 cut(s) 81, 844
PciI ACATGT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 3 cut(s) 212, 802, 869
PpsI GAGTC 3 cut(s) 212, 802, 869
PscI ACATGT 1 cut(s) 275
Psp1406I AACGTT 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 142, 540, 675
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 3 cut(s) 142, 540, 675
PspN4I GGNNCC 1 cut(s) 840
RsaI GTAC 4 cut(s) 72, 130, 709, 765
RsaNI GTAC 4 cut(s) 71, 129, 708, 764
SapI GCTCTTC 1 cut(s) 474
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 3 cut(s) 213, 803, 870
ScrFI CCNGG 3 cut(s) 144, 542, 677
SfcI CTRYAG 1 cut(s) 621
SphI GCATGC 1 cut(s) 141
Sse9I AATT 3 cut(s) 39, 262, 652
SsiI CCGC 1 cut(s) 828
SspMI CTAG 2 cut(s) 300, 868
StyD4I CCNGG 3 cut(s) 142, 540, 675
TaaI ACNGT 4 cut(s) 65, 75, 462, 527
TaiI ACGT 1 cut(s) 858
TaqI TCGA 2 cut(s) 97, 163
TasI AATT 3 cut(s) 39, 262, 652
TatI WGTACW 1 cut(s) 763
TfiI GAWTC 1 cut(s) 662
TscAI CASTG 2 cut(s) 532, 610
TseFI GTSAC 2 cut(s) 173, 221
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 2 cut(s) 173, 221
TspDTI ATGAA 5 cut(s) 33, 70, 186, 258, 660
TspRI CASTG 2 cut(s) 532, 610
XapI RAATTY 1 cut(s) 652
XceI RCATGY 2 cut(s) 141, 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 2 cut(s) 300, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.