Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003532

Physical Location & Seq

Genomic Coordinates Forward (+)

4728910 .. 4731135

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGACGCCATAGATTCAGTAGTGGATCCGCTCAGAGAGTTCTCTAAGGACAGCATTCGGCTCGTCAAGCGGTGCCACAAGCCAGATCGCAAAGAGTTCACGAAGGTCGCGCTCCGTACAGCGATCGGGTTCGTAGTGATGGGATTCGTTGGGTTCTTCGTGAAGCTGATCTTCATCCCCATCAACAACATCATTGTTGGATCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

SecE

Protein Analysis

70

Amino Acids

7.8

Weight (kDa)

9.74

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24920 AT5G50460
fragaria_vesca	FvH4_5g08390 FvH4_5g21410 FvH4_5g21410
malus_domestica	MD06G1028800.v1.1 MD16G1278200.v1.1
prunus_persica	Prupe.5G043000_v2.0.a1
pyrus_communis	pycom16g24850
rosa_chinensis	RchiOBHm_Chr2g0175721 RchiOBHm_Chr7g0190061 RchiOBHm_Chr7g0208811
rosa_multiflora	Rmu_co8387321.1_g000001 Rmu_sc0000998.1_g000013 Rmu_sc0004886.1_g000007 Rmu_sc0041896.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077120 Rroxscaffold_3G00250250
rosa_rugosa	Rorug06G0502100 Rorug07G0105900
rosa_samantha	Rh2AG666100 Rh2BG677300 Rh2CG640600 Rh2DG691200 Rh7AG107600 Rh7AG241100 Rh7BG109900 Rh7BG236000 Rh7CG112200 Rh7CG255700 Rh7DG110600 Rh7DG247100
rosa_wichuraiana	Rw2G054620 Rw7G009290 Rw7G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	1 cut(s)	110
AciI	CCGC	2 cut(s)	29, 70
AclWI	GGATC	3 cut(s)	20, 33, 208
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	118
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	3 cut(s)	20, 33, 208
AspLEI	GCGC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	72
BccI	CCATC	2 cut(s)	133, 188
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BmiI	GGNNCC	2 cut(s)	27, 74
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	173
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	25, 85, 123, 168, 200
BspACI	CCGC	2 cut(s)	29, 70
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	27, 74
BspPI	GGATC	3 cut(s)	20, 33, 208
BspT107I	GGYRCC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	31
BssMI	GATC	5 cut(s)	25, 85, 123, 168, 200
BssNI	GRCGYC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	32, 45
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	28, 88, 126, 171, 203
BstMBI	GATC	5 cut(s)	25, 85, 123, 168, 200
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	25, 200
BstYI	RGATCY	2 cut(s)	25, 200
BtsCI	GGATG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	112
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	117
CviJI	RGCY	3 cut(s)	61, 82, 166
CviKI_1	RGCY	3 cut(s)	61, 82, 166
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	32, 45
DpnI	GATC	5 cut(s)	27, 87, 125, 170, 202
DpnII	GATC	5 cut(s)	25, 85, 123, 168, 200
FaiI	YATR	1 cut(s)	11
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FokI	GGATG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	14, 144
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	100, 160
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	32, 45
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	5 cut(s)	25, 85, 123, 168, 200
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	1 cut(s)	96
MalI	GATC	5 cut(s)	27, 87, 125, 170, 202
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	5 cut(s)	25, 85, 123, 168, 200
MboII	GAAGA	2 cut(s)	148, 163
MflI	RGATCY	2 cut(s)	25, 200
MmeI	TCCRAC	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	54
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	5 cut(s)	25, 85, 123, 168, 200
NlaIV	GGNNCC	2 cut(s)	27, 74
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	14, 144
Ple19I	CGATCG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	27, 74
PsuI	RGATCY	2 cut(s)	25, 200
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
Sau3AI	GATC	5 cut(s)	25, 85, 123, 168, 200
SetI	ASST	2 cut(s)	108, 168
SgeI	CNNG	8 cut(s)	74, 79, 91, 95, 112, 121, 139, 172
SsiI	CCGC	2 cut(s)	29, 70
TfiI	GAWTC	2 cut(s)	14, 144
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.