Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004886.1

Orthogroup ID

OG0003532

Physical Location & Seq

Genomic Coordinates Forward (+)

35205 .. 35556

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004886.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atggacgccattgactcagttgtggatcctctcagagagttcgctaaggacagcgctcggctcgtcaagaggtgccacaagcccgatcgcaaagaattctcaaaggtggcgttgcgtacagccatcgggtttgttgtgatgggattcgttgggtttttcgtgaagctgatcttcattcccatcaacaacatcatcgtcggatctgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

SecE

Protein Analysis

69

Amino Acids

7.72

Weight (kDa)

9.74

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24920 AT5G50460
fragaria_vesca	FvH4_5g08390 FvH4_5g21410 FvH4_5g21410
malus_domestica	MD06G1028800.v1.1 MD16G1278200.v1.1
prunus_persica	Prupe.5G043000_v2.0.a1
pyrus_communis	pycom16g24850
rosa_chinensis	RchiOBHm_Chr2g0175721 RchiOBHm_Chr7g0190061 RchiOBHm_Chr7g0208811
rosa_multiflora	Rmu_co8387321.1_g000001 Rmu_sc0000998.1_g000013 Rmu_sc0004886.1_g000007 Rmu_sc0041896.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077120 Rroxscaffold_3G00250250
rosa_rugosa	Rorug06G0502100 Rorug07G0105900
rosa_samantha	Rh2AG666100 Rh2BG677300 Rh2CG640600 Rh2DG691200 Rh7AG107600 Rh7AG241100 Rh7BG109900 Rh7BG236000 Rh7CG112200 Rh7CG255700 Rh7DG110600 Rh7DG247100
rosa_wichuraiana	Rw2G054620 Rw7G009290 Rw7G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	20, 33, 208
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	118
AfeI	AGCGCT	1 cut(s)	55
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	3 cut(s)	20, 33, 208
Aor51HI	AGCGCT	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	72
BccI	CCATC	3 cut(s)	131, 133, 188
BfoI	RGCGCY	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	27, 74
Bpu10I	CCTNAGC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	30, 46
Bsh1285I	CGRYCG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	25, 85, 168, 200
BspCNI	CTCAG	2 cut(s)	29, 45
BspLI	GGNNCC	2 cut(s)	27, 74
BspPI	GGATC	3 cut(s)	20, 33, 208
BspT107I	GGYRCC	1 cut(s)	72
BssMI	GATC	4 cut(s)	25, 85, 168, 200
BssNI	GRCGYC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	16, 32, 45
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	28, 88, 171, 203
BstMBI	GATC	4 cut(s)	25, 85, 168, 200
BstMCI	CGRYCG	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	25, 200
BstYI	RGATCY	2 cut(s)	25, 200
CfoI	GCGC	1 cut(s)	56
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	117
CviJI	RGCY	4 cut(s)	61, 82, 122, 166
CviKI_1	RGCY	4 cut(s)	61, 82, 122, 166
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	3 cut(s)	16, 32, 45
DpnI	GATC	4 cut(s)	27, 87, 170, 202
DpnII	GATC	4 cut(s)	25, 85, 168, 200
Eco47III	AGCGCT	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	95
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
GlaI	GCGC	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	57
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	14, 144
Hpy188I	TCNGA	2 cut(s)	35, 200
Hpy188III	TCNNGA	2 cut(s)	67, 160
Hpy99I	CGWCG	1 cut(s)	200
HpyF3I	CTNAG	3 cut(s)	16, 32, 45
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	25, 85, 168, 200
MalI	GATC	4 cut(s)	27, 87, 170, 202
MboI	GATC	4 cut(s)	25, 85, 168, 200
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	2 cut(s)	25, 200
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	39, 63
NdeII	GATC	4 cut(s)	25, 85, 168, 200
NlaIV	GGNNCC	2 cut(s)	27, 74
NmeAIII	GCCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	27, 74
PsuI	RGATCY	2 cut(s)	25, 200
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	25, 85, 168, 200
SchI	GAGTC	1 cut(s)	8
SetI	ASST	3 cut(s)	74, 108, 168
SgeI	CNNG	7 cut(s)	69, 74, 79, 91, 95, 139, 172
Sse9I	AATT	1 cut(s)	95
TasI	AATT	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	163
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.