Rh7CG255700

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003532
Physical Location & Seq
Reverse (-)
24766477 .. 24766982
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG255700.1

Sequence Viewer

Length: 411 bp
ATGAGCAACCGTAGCCTGGAGATATATGGGCCTAGAACAACCCAAACAATTGAGCCTCACTCCCAAATAACCTTCAAAAGAAAGAAAGAAAGAAAATCCTCCTATATTGACCAGTGTCCTAACGCGTCTAAACCACTTAGAAGAAGAAGACGTTTTCTCTTTTATACATTCTCAGATCTTCTCTCAATTCGCTCACAGAAGATGGACGCCATAGACTCAGTCGTGGATCCCCTCAGAGAGTTCTCCAAGGACTCCATCCGACTCGTCAAGCGCTGCCACAAGCCCGATCGCAAAGAATTCTCCAAGGTGGCGCTCCGGACCGCGATTGGATTCGTGGTGATGGGATTCGTTGGGTTCTTCGTCAAGCTGATCTTCATTCCCATCAACAACATCATCGTCGGATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

136

Amino Acids

15.86

Weight (kDa)

10.53

Isoelectric Point (pI)

62.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 80 - 132 2.6e-13 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 323
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 1 cut(s) 321
AclWI GGATC 3 cut(s) 221, 234, 409
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 207
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
AlwI GGATC 3 cut(s) 221, 234, 409
Aor13HI TCCGGA 1 cut(s) 315
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 2 cut(s) 273, 313
AspS9I GGNCC 2 cut(s) 29, 318
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 318
BamHI GGATCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 260
BccI CCATC 4 cut(s) 196, 263, 334, 389
BciT130I CCWGG 1 cut(s) 17
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 2 cut(s) 274, 314
BglII AGATCT 1 cut(s) 175
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 29, 318
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 17
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 246, 303
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 315
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 246, 303
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 186, 231, 247
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 125, 323
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 5 cut(s) 175, 226, 286, 369, 401
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 185, 230, 246
BspEI TCCGGA 1 cut(s) 315
BspFNI CGCG 2 cut(s) 125, 323
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 3 cut(s) 221, 234, 409
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 246, 303
BssMI GATC 5 cut(s) 175, 226, 286, 369, 401
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 246, 303
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 137, 172, 217, 233
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 125, 323
BstH2I RGCGCY 2 cut(s) 274, 314
BstHHI GCGC 2 cut(s) 273, 313
BstKTI GATC 5 cut(s) 178, 229, 289, 372, 404
BstMBI GATC 5 cut(s) 175, 226, 286, 369, 401
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 17
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 2 cut(s) 125, 323
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 3 cut(s) 175, 226, 401
BstYI RGATCY 3 cut(s) 175, 226, 401
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 119
CfoI GCGC 2 cut(s) 273, 313
Cfr13I GGNCC 2 cut(s) 29, 318
CpoI CGGWCCG 1 cut(s) 318
CseI GACGC 2 cut(s) 114, 215
CspI CGGWCCG 1 cut(s) 318
CviJI RGCY 5 cut(s) 15, 31, 55, 283, 367
CviKI_1 RGCY 5 cut(s) 15, 31, 55, 283, 367
DdeI CTNAG 4 cut(s) 137, 172, 217, 233
DpnI GATC 5 cut(s) 177, 228, 288, 371, 403
DpnII GATC 5 cut(s) 175, 226, 286, 369, 401
Eco130I CCWWGG 2 cut(s) 246, 303
Eco47I GGWCC 1 cut(s) 318
Eco47III AGCGCT 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 246, 303
ErhI CCWWGG 2 cut(s) 246, 303
FaiI YATR 5 cut(s) 25, 27, 105, 165, 212
FalI AAGNNNNNCTT 2 cut(s) 356, 388
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 272, 312
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 2 cut(s) 274, 314
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 316
HgaI GACGC 2 cut(s) 114, 215
HhaI GCGC 2 cut(s) 273, 313
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 2 cut(s) 271, 311
HinP1I GCGC 2 cut(s) 271, 311
HinfI GANTC 5 cut(s) 215, 251, 261, 330, 345
HpaII CCGG 1 cut(s) 316
HphI GGTGA 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 175, 236, 260, 401
Hpy188III TCNNGA 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 4 cut(s) 137, 172, 217, 233
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 2 cut(s) 271, 311
Kpn2I TCCGGA 1 cut(s) 315
Kzo9I GATC 5 cut(s) 175, 226, 286, 369, 401
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 2, 29, 125, 329
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 151
MalI GATC 5 cut(s) 177, 228, 288, 371, 403
MboI GATC 5 cut(s) 175, 226, 286, 369, 401
MboII GAAGA 7 cut(s) 153, 156, 159, 170, 211, 349, 364
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 3 cut(s) 175, 226, 401
MluCI AATT 3 cut(s) 48, 186, 296
MluI ACGCGT 1 cut(s) 123
MlyI GAGTC 3 cut(s) 209, 245, 255
MmeI TCCRAC 2 cut(s) 283, 379
MnlI CCTC 3 cut(s) 66, 109, 242
MroI TCCGGA 1 cut(s) 315
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 17
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 2 cut(s) 125, 323
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 5 cut(s) 175, 226, 286, 369, 401
NlaIV GGNNCC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 330, 345
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 275
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 3 cut(s) 209, 245, 255
PpsI GAGTC 3 cut(s) 209, 245, 255
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 29, 318
PsuI RGATCY 3 cut(s) 175, 226, 401
PsyI GACNNNGTC 1 cut(s) 218
PvuI CGATCG 1 cut(s) 289
Rsr2I CGGWCCG 1 cut(s) 318
RsrII CGGWCCG 1 cut(s) 318
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 5 cut(s) 175, 226, 286, 369, 401
Sau96I GGNCC 2 cut(s) 29, 318
SchI GAGTC 3 cut(s) 209, 245, 255
ScrFI CCNGG 1 cut(s) 17
SetI ASST 4 cut(s) 74, 154, 309, 369
SinI GGWCC 1 cut(s) 318
Sse9I AATT 3 cut(s) 48, 186, 296
SsiI CCGC 1 cut(s) 321
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 246, 303
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 154
TasI AATT 3 cut(s) 48, 186, 296
TfiI GAWTC 2 cut(s) 330, 345
TscAI CASTG 1 cut(s) 119
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 119
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 296
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.