Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011487

Physical Location & Seq

Genomic Coordinates Forward (+)

13196976 .. 13197812

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGGTCGCAAAAGAAAAGCTTAGCAATCTGGCCAGCTCGGCCAAGGAGCACATCAACATCTACAAAGCCAAAGTAGTAGAGAAGTTGGAGAGAGCCAGAGCAAGAACTAAGGAAGAAAAGAAGATGGCGAAAGAGCGTCGGAAAGTGAAGGAGGCAAGTGAAAAAATGGAGCTACATAAAGCGAAAGCCAGGCACGCAGAGAAGAAATTGGGTGCTAAACTAACTCATGGGCATGGGATATTCAACTATCACCACCCACCACCAGCACCACTTCATCATCATCAACATCAACATGGGCAACAACATCTGGGAACCACTAACATGATCCCGGCTTCAAATCCACATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

118

Amino Acids

13.37

Weight (kDa)

10.17

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 70	2.5e-20	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35300
fragaria_vesca	FvH4_5g21820 FvH4_5g21830
malus_domestica	MD06G1032700.v1.1
prunus_persica	Prupe.5G039300_v2.0.a1 Prupe.5G039400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209341
rosa_laevigata	RLG00000003143
rosa_multiflora	Rmu_sc0001701.1_g000025 Rmu_sc0001701.1_g000026
rosa_roxburghii	Rroxscaffold_3G00249510
rosa_rugosa	Rorug07G0111700 Rorug07G0111800
rosa_samantha	Rh7AG245600 Rh7BG240700 Rh7CG260900 Rh7CG261200 Rh7DG252200 Rh7DG252300
rosa_wichuraiana	Rw7G020800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	2 cut(s)	33, 42
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	247, 339
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	22, 39, 175
AluI	AGCT	3 cut(s)	22, 39, 175
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	33, 42
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	41
BlpI	GCTNAGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	193, 332
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	193, 332
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	35, 44
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	332
BsnI	GGCC	2 cut(s)	35, 44
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	35, 44
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	37, 198
BstDEI	CTNAG	2 cut(s)	23, 111
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 197
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	191, 330
BsuRI	GGCC	2 cut(s)	35, 44
Cac8I	GCNNGC	2 cut(s)	37, 198
CseI	GACGC	1 cut(s)	128
CviAII	CATG	5 cut(s)	230, 236, 296, 325, 347
CviJI	RGCY	9 cut(s)	22, 35, 39, 44, 71, 98, 175, 191, 335
CviKI_1	RGCY	9 cut(s)	22, 35, 39, 44, 71, 98, 175, 191, 335
DdeI	CTNAG	2 cut(s)	23, 111
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	2 cut(s)	33, 42
Eco130I	CCWWGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	233, 239, 299, 328, 350
FaiI	YATR	6 cut(s)	180, 231, 237, 297, 326, 348
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	5 cut(s)	229, 235, 295, 324, 346
FspBI	CTAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	35, 44
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	233, 239, 299, 328, 350
HindIII	AAGCTT	1 cut(s)	20
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 197
HpyF3I	CTNAG	2 cut(s)	23, 111
Hsp92II	CATG	5 cut(s)	233, 239, 299, 328, 350
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	49, 172
LpnPI	CCDG	8 cut(s)	17, 49, 112, 178, 205, 279, 296, 345
MaeI	CTAG	1 cut(s)	352
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	3 cut(s)	128, 136, 217
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	69, 122
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MslI	CAYNNNNRTG	3 cut(s)	234, 294, 323
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	193, 332
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	41, 197
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	5 cut(s)	233, 239, 299, 328, 350
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	1 cut(s)	350
PciI	ACATGT	1 cut(s)	346
PscI	ACATGT	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	316
RseI	CAYNNNNRTG	3 cut(s)	234, 294, 323
Sau3AI	GATC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	193, 332
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	9, 24, 41, 177
SfiI	GGCCNNNNNGGCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	3 cut(s)	234, 294, 323
Sse9I	AATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	191, 330
StyI	CCWWGG	1 cut(s)	45
TasI	AATT	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	266
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.