RchiOBHm_Chr7g0209341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011487
Physical Location & Seq
Forward (+)
26699898 .. 26700292
395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18736

Sequence Viewer

Length: 312 bp
ATGCAGTCTGCAAAGGAGAAGATCAGTAACTTGGCCAGTGCTGCCAAGGAGAAAGTAGAGACTCACAAAGCCAAAACGGAAGAGAAGGTTGAGAAGATGACTGCGAGGACAGAGGAAGAGAAGAGAATAGCGGAGGAGAAGAGAAGAGCTAAAGAGGCAGAAGCGAAGATGAAGCTGCATGAGTCCAAAGCCAAGCATGAAGCCGATAAACTGACTACTGGTGCTCCTGCAACTGATGGCGGTGCTCCGATGGGCAGGACCGCAGTTCCATCGTATCCCCCGGGAGGTTACAGCACCCGAAAACTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

9.55

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 70 3.6e-23 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 131, 240, 261
AcoI YGGCCR 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 149, 175
AluI AGCT 2 cut(s) 149, 175
Alw21I GWGCWC 2 cut(s) 226, 247
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 41, 175
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 2 cut(s) 281, 282
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 258
BalI TGGCCA 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 226, 247
BbvI GCAGC 2 cut(s) 28, 162
BccI CCATC 3 cut(s) 230, 244, 277
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciVI GTATCC 1 cut(s) 285
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 310
BfuI GTATCC 1 cut(s) 285
BisI GCNGC 2 cut(s) 42, 176
BlsI GCNGC 2 cut(s) 43, 177
Bme1390I CCNGG 2 cut(s) 281, 282
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 281, 282
BpuMI CCSGG 2 cut(s) 281, 282
BsaJI CCNNGG 3 cut(s) 45, 279, 280
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 36, 223
BseDI CCNNGG 3 cut(s) 45, 279, 280
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 36, 223
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 28, 162
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 226, 247
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 226, 247
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 3 cut(s) 131, 240, 261
BspANI GGCC 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 139
BsrI ACTGG 2 cut(s) 36, 223
BssECI CCNNGG 3 cut(s) 45, 279, 280
BssMI GATC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 5 cut(s) 75, 111, 116, 134, 139
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 41, 155
BstSCI CCNGG 2 cut(s) 279, 280
BstV1I GCAGC 2 cut(s) 28, 162
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 258
Cfr9I CCCGGG 1 cut(s) 280
CviAII CATG 2 cut(s) 179, 197
CviJI RGCY 6 cut(s) 35, 71, 149, 175, 191, 203
CviKI_1 RGCY 6 cut(s) 35, 71, 149, 175, 191, 203
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 5 cut(s) 75, 111, 116, 134, 139
EarI CTCTTC 5 cut(s) 75, 111, 116, 134, 139
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 182, 200
FaiI YATR 2 cut(s) 180, 198
FatI CATG 2 cut(s) 178, 196
Fnu4HI GCNGC 2 cut(s) 42, 176
Fsp4HI GCNGC 2 cut(s) 42, 176
FspBI CTAG 1 cut(s) 310
GluI GCNGC 2 cut(s) 42, 176
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 281
Hin1II CATG 2 cut(s) 182, 200
HinfI GANTC 2 cut(s) 61, 182
HpaII CCGG 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 4, 11, 178, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 155
Hsp92II CATG 2 cut(s) 182, 200
Kzo9I GATC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 229, 250
LpnPI CCDG 5 cut(s) 49, 204, 240, 241, 294
Lsp1109I GCAGC 2 cut(s) 28, 162
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 26, 287
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 8 cut(s) 31, 92, 106, 128, 133, 151, 156, 178
MhlI GDGCHC 2 cut(s) 226, 247
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 2 cut(s) 55, 191
MnlI CCTC 5 cut(s) 99, 106, 127, 148, 278
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 281, 282
MwoI GCNNNNNNNGC 2 cut(s) 41, 155
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 182, 200
PciSI GCTCTTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 43, 177
PleI GAGTC 2 cut(s) 55, 190
PpsI GAGTC 2 cut(s) 55, 190
PspPI GGNCC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 139
SatI GCNGC 2 cut(s) 42, 176
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 2 cut(s) 55, 191
ScrFI CCNGG 2 cut(s) 281, 282
SduI GDGCHC 2 cut(s) 226, 247
SetI ASST 4 cut(s) 90, 151, 177, 289
SinI GGWCC 1 cut(s) 258
SmaI CCCGGG 1 cut(s) 282
SsiI CCGC 3 cut(s) 131, 240, 261
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 279, 280
StyI CCWWGG 1 cut(s) 45
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 41, 175
TspDTI ATGAA 2 cut(s) 185, 213
TspGWI ACGGA 1 cut(s) 92
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 258
XmaI CCCGGG 1 cut(s) 280
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.